FFCP PHASE1:Mm9::chr2:26171003..26171022,+: Difference between revisions
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m (moved FFCP PHASE1 mm9::chr2:26171003..26171022,+ to FFCP PHASE1:Mm9::chr2:26171003..26171022,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=67839 | |EntrezGene=67839 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q6IR34 | |UniProt=Q6IR34 | ||
|association_with_transcript=-12bp_to_ENSMUST00000066936_5end | |||
|cluster_id=chr2:26171003..26171022,+ | |||
|description=CAGE_peak_3_at_Gpsm1_5end | |||
|id=chr2:26171003..26171022,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.04e-08!23;CL:0000337!1.04e-08!23;CL:0000540!4.60e-08!33;CL:0000047!4.60e-08!33;CL:0000031!4.60e-08!33;CL:0000404!4.60e-08!33;CL:0000221!5.54e-07!44;CL:0000133!5.54e-07!44;CL:0002319!9.61e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.43e-18,23;CL:0000337,1.43e-18,23;CL:0000540,2.42e-14,33;CL:0000047,2.42e-14,33;CL:0000031,2.42e-14,33;CL:0000404,2.42e-14,33;CL:0002319,4.79e-12,43;CL:0000221,1.24e-11,44;CL:0000133,1.24e-11,44;CL:0000393,2.97e-11,39;CL:0000211,2.97e-11,39;CL:0002609,1.11e-10,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.51e-10!73;UBERON:0005743!2.51e-10!73;UBERON:0000073!8.25e-10!75;UBERON:0001016!8.25e-10!75;UBERON:0000153!2.69e-09!94;UBERON:0001049!7.14e-09!52;UBERON:0005068!7.14e-09!52;UBERON:0006241!7.14e-09!52;UBERON:0007135!7.14e-09!52;UBERON:0002346!9.80e-09!71;UBERON:0003075!9.80e-09!71;UBERON:0007284!9.80e-09!71;UBERON:0004121!1.43e-08!102;UBERON:0000924!1.43e-08!102;UBERON:0006601!1.43e-08!102;UBERON:0003056!1.02e-07!49;UBERON:0007811!1.52e-07!86;UBERON:0002020!1.77e-07!34;UBERON:0000033!2.42e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.31e-11,34;UBERON:0002346,2.58e-10,64;UBERON:0003075,2.58e-10,64;UBERON:0007284,2.58e-10,64;UBERON:0001017,2.90e-10,73;UBERON:0001016,8.79e-10,75;UBERON:0004121,4.11e-09,95;UBERON:0000924,4.11e-09,95;UBERON:0006601,4.11e-09,95;UBERON:0001049,1.29e-08,52;UBERON:0005068,1.29e-08,52;UBERON:0006241,1.29e-08,52;UBERON:0007135,1.29e-08,52;UBERON:0001948,1.41e-08,5;UBERON:0002315,1.41e-08,5;UBERON:0010371,3.61e-08,73;UBERON:0000073,4.39e-08,54;UBERON:0003056,4.56e-08,49;UBERON:0002240,4.94e-07,6;UBERON:0005174,4.94e-07,6;UBERON:0001137,4.94e-07,6;UBERON:0002780,7.19e-07,39;UBERON:0001890,7.19e-07,39;UBERON:0006240,7.19e-07,39;UBERON:0003528,8.55e-07,29;UBERON:0002791,8.55e-07,29;UBERON:0001893,8.55e-07,29 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0.233612640595526,0.258246646883153,0.703943610758334,0.234064526321993,0,0.398860794976682,0.171200729931206,0.34968160967599,0.333109761815663,0,0,0,0.137114433605739,0.42438965179803,0.595303031057488,0.297872853602656,0.261199789138935,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.367093504323363,0,0.218025156380447,0.659058548203415,0.58328969722285,0.279972843250725,0,0.671130424230945,0.725362142011344,0,0.257259436035947,0.286533439938757,0,5.26022798234954,4.7609188134483,8.23980824558033,0,0,0,0,0.7104801149461,1.19840044207362,1.53687322128622,4.56234294157302,4.72520784160917,4.41682418837902,2.57085885963423,2.20868540951614,4.5321595709533,6.61333750025831,3.67687514644008,0,0.127687338085188,0.614426133024974,4.08847491963601,6.12967212136145,2.08365348222704,0.279182999001381,0,0.45839474333043,2.94628585473668,2.70506193518296,4.28718725398191,0.075726193333184,0.226714680320357,0.289864488701678,0,0.679971333707751,0,0,0,0.421333260395256,0,0.259786004602869,0,0.845060518660083,1.28326477414318,0,0,0,0,0,0.11418387971906,0.258937883647172,0.445326417194474,0.173485326766136,0.304465478312141,0.691846491768175,0.150722640552623,0.352766121407114,0,0.494389935468748,0,0,0.323533699894818,0.220841518460394,0.484875253135222,0,0.878342391034642,0.83778682725382,0,0.599075622529601,0,0.127070227073065,0.748953197024114,0.457500602818626,8.79580464790051,0.173824320192276,0.767146371990992,0.62336413367868,0.648965052271031,1.2220723662038,0,0,0,1.43132487258974,0.689706313300419,0.540186389416048,0.90422890701429,1.42876648217788,1.92170580427275,1.78033276663485,0,1.5089759505299,2.64748512234947,1.23165786914764,1.53437012699302,1.66828349535359,0.348252166522167,0.411564272815887,1.19420560091096,0,0.257347907114715,0.284163499395593,1.03562886267751,0.469052119962192,0.540186184383045,0.710234206755631,0.393528463494808,0.308534225774757,0.697601834251224,0.804820204198858,0.350296027101508,0.16455984991348,0.164167464079095,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.841159794256509,3.08713837137853,0,0,0.853153002140936,0.232236671860439,0.515469845288373,0.201683524623343,0.22237804384487,0.190225626112559,0.474529061544512,0.494096864172033,0.502670417600539,0.198956472041151,0,0,0,0,0.379335801906163,0.913988100877831,0,0,1.35766741017338,0.771494018793504,0.442655759869801,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0.757965647081939,0.651859905768103,1.18821560042632,0.938760993154008,0.670025029767263,0,0.390267295715598,0.315270288212382,0.221464689648775,1.11618338060241,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,0.481651769963376,0.586058432961016,0.163934945376675,0,0.315508219416257,0,1.29254038639679,0.238968797952552,0.445597348164788,0.849229592366497,0,1.75353514746787,0.790575555893047,0.963963949265421,0.567760340833074,1.24645922567079,1.95464351224291,0,1.32745138339963,0.971122544619926,0.302323556964751,0.188605079755898,0,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,0,0.540183282093931,1.29358683782755,0.643011105094777,0.886701168211368,1.78368817602071,0.493647061806363,2.13125464380219,0.23467170806371,0.847328283455281,0,0.16488625294148,0,0.422190474497091,0.119372344003136,0.492422699235184,0.582961673259701,0.556275906031529,0,0.206386867963223,0.555583582109135,0,0,0,0.849892149969277,0.69975726161829,0.829199842826543,0,1.26534397432454,0.406638934253697,0.432021363287205,0.627264888043406,0,0.269728692769641,0.247960367176008,0,0.129614973291793,0.621339313086926,0,0.897099276263873,0.330916980914195,0.972255941720238,1.42075805825504,0.675824501963113,1.17357238645754,0.651021924219751,1.04859344425711,0,1.15212002503146,0.316011120628178,0.608175645870493,0.410843828659309,0.25984164595559,1.07416017400489,0.596044064343795,0.721172697119813,0.590758108698309,0.605798699688886,0.457240839929999,0.705783295957884,0.487289403698762,0.962118416403295,0.584384510907845,0,0.221985953374065,0.269141569828427,1.34307693091263,0,0,0,0.643105137237198,0,1.12950368523413,0,0,0.343706364687375,0.685082519770642,0,0.675022500231806,0.45032120322422,0.453142408984205,1.03552062350364,1.45302286617847,0.399024873401031,1.53660245178721,0.486213434136588,1.04806581313991,0.919217542250071,0.888986911206461,0.412070114477788,1.28367683836726,0,0.760437899670719,0.565879024158229,1.12369808963859,0.89635213366817,0.746661096422973,1.90517476513229,1.39061191133827,0.964546102318525,0.412085900803307,0.147198920134397,0.685738504770831,1.24233064311536,0.238436189947321,0.436039249896986,0.941093804153306,0.761531471025089,0.548783918618318,0.263069711437843,0.543216455383447,0.561142271657738,0.830445126869219,0.394017929502254,1.22769312950907,0.77468420592983,0.385813221962283,1.99848462350357,0.935726433781634,0.859484216193193,0.382576664137687,0.220591419119515,0.231867835620421 | |phase1_expression=0.80074423552397,0,0,0,0,0,0.233612640595526,0.258246646883153,0.703943610758334,0.234064526321993,0,0.398860794976682,0.171200729931206,0.34968160967599,0.333109761815663,0,0,0,0.137114433605739,0.42438965179803,0.595303031057488,0.297872853602656,0.261199789138935,0,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.367093504323363,0,0.218025156380447,0.659058548203415,0.58328969722285,0.279972843250725,0,0.671130424230945,0.725362142011344,0,0.257259436035947,0.286533439938757,0,5.26022798234954,4.7609188134483,8.23980824558033,0,0,0,0,0.7104801149461,1.19840044207362,1.53687322128622,4.56234294157302,4.72520784160917,4.41682418837902,2.57085885963423,2.20868540951614,4.5321595709533,6.61333750025831,3.67687514644008,0,0.127687338085188,0.614426133024974,4.08847491963601,6.12967212136145,2.08365348222704,0.279182999001381,0,0.45839474333043,2.94628585473668,2.70506193518296,4.28718725398191,0.075726193333184,0.226714680320357,0.289864488701678,0,0.679971333707751,0,0,0,0.421333260395256,0,0.259786004602869,0,0.845060518660083,1.28326477414318,0,0,0,0,0,0.11418387971906,0.258937883647172,0.445326417194474,0.173485326766136,0.304465478312141,0.691846491768175,0.150722640552623,0.352766121407114,0,0.494389935468748,0,0,0.323533699894818,0.220841518460394,0.484875253135222,0,0.878342391034642,0.83778682725382,0,0.599075622529601,0,0.127070227073065,0.748953197024114,0.457500602818626,8.79580464790051,0.173824320192276,0.767146371990992,0.62336413367868,0.648965052271031,1.2220723662038,0,0,0,1.43132487258974,0.689706313300419,0.540186389416048,0.90422890701429,1.42876648217788,1.92170580427275,1.78033276663485,0,1.5089759505299,2.64748512234947,1.23165786914764,1.53437012699302,1.66828349535359,0.348252166522167,0.411564272815887,1.19420560091096,0,0.257347907114715,0.284163499395593,1.03562886267751,0.469052119962192,0.540186184383045,0.710234206755631,0.393528463494808,0.308534225774757,0.697601834251224,0.804820204198858,0.350296027101508,0.16455984991348,0.164167464079095,0.0810688095458557,0.146199987425332,0,0.134206418760372,0.841159794256509,3.08713837137853,0,0,0.853153002140936,0.232236671860439,0.515469845288373,0.201683524623343,0.22237804384487,0.190225626112559,0.474529061544512,0.494096864172033,0.502670417600539,0.198956472041151,0,0,0,0,0.379335801906163,0.913988100877831,0,0,1.35766741017338,0.771494018793504,0.442655759869801,0,0,0,0,0,0,0,0,0,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0.757965647081939,0.651859905768103,1.18821560042632,0.938760993154008,0.670025029767263,0,0.390267295715598,0.315270288212382,0.221464689648775,1.11618338060241,0.327726629431476,0.172684981865896,0.144649058581512,0,0,0,0,0.481651769963376,0.586058432961016,0.163934945376675,0,0.315508219416257,0,1.29254038639679,0.238968797952552,0.445597348164788,0.849229592366497,0,1.75353514746787,0.790575555893047,0.963963949265421,0.567760340833074,1.24645922567079,1.95464351224291,0,1.32745138339963,0.971122544619926,0.302323556964751,0.188605079755898,0,0,0.258428293168221,0.363533729477506,0,0.316036757935816,0,0,0,0.540183282093931,1.29358683782755,0.643011105094777,0.886701168211368,1.78368817602071,0.493647061806363,2.13125464380219,0.23467170806371,0.847328283455281,0,0.16488625294148,0,0.422190474497091,0.119372344003136,0.492422699235184,0.582961673259701,0.556275906031529,0,0.206386867963223,0.555583582109135,0,0,0,0.849892149969277,0.69975726161829,0.829199842826543,0,1.26534397432454,0.406638934253697,0.432021363287205,0.627264888043406,0,0.269728692769641,0.247960367176008,0,0.129614973291793,0.621339313086926,0,0.897099276263873,0.330916980914195,0.972255941720238,1.42075805825504,0.675824501963113,1.17357238645754,0.651021924219751,1.04859344425711,0,1.15212002503146,0.316011120628178,0.608175645870493,0.410843828659309,0.25984164595559,1.07416017400489,0.596044064343795,0.721172697119813,0.590758108698309,0.605798699688886,0.457240839929999,0.705783295957884,0.487289403698762,0.962118416403295,0.584384510907845,0,0.221985953374065,0.269141569828427,1.34307693091263,0,0,0,0.643105137237198,0,1.12950368523413,0,0,0.343706364687375,0.685082519770642,0,0.675022500231806,0.45032120322422,0.453142408984205,1.03552062350364,1.45302286617847,0.399024873401031,1.53660245178721,0.486213434136588,1.04806581313991,0.919217542250071,0.888986911206461,0.412070114477788,1.28367683836726,0,0.760437899670719,0.565879024158229,1.12369808963859,0.89635213366817,0.746661096422973,1.90517476513229,1.39061191133827,0.964546102318525,0.412085900803307,0.147198920134397,0.685738504770831,1.24233064311536,0.238436189947321,0.436039249896986,0.941093804153306,0.761531471025089,0.548783918618318,0.263069711437843,0.543216455383447,0.561142271657738,0.830445126869219,0.394017929502254,1.22769312950907,0.77468420592983,0.385813221962283,1.99848462350357,0.935726433781634,0.859484216193193,0.382576664137687,0.220591419119515,0.231867835620421 | ||
|short_description=p3@Gpsm1 | |||
}} | }} |
Latest revision as of 10:55, 26 September 2015
Short description: | p3@Gpsm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gpsm1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -12bp_to_ENSMUST00000066936_5end |
EntrezGene: | Gpsm1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.43e-18 | 23 |
neuroblast (sensu Vertebrata) | 1.43e-18 | 23 |
neuron | 2.42e-14 | 33 |
neuronal stem cell | 2.42e-14 | 33 |
neuroblast | 2.42e-14 | 33 |
electrically signaling cell | 2.42e-14 | 33 |
neural cell | 4.79e-12 | 43 |
ectodermal cell | 1.24e-11 | 44 |
neurectodermal cell | 1.24e-11 | 44 |
electrically responsive cell | 2.97e-11 | 39 |
electrically active cell | 2.97e-11 | 39 |
neuron of cerebral cortex | 1.11e-10 | 6 |
Ontology term | p-value | n |
---|---|---|
gray matter | 1.31e-11 | 34 |
neurectoderm | 2.58e-10 | 64 |
neural plate | 2.58e-10 | 64 |
presumptive neural plate | 2.58e-10 | 64 |
central nervous system | 2.90e-10 | 73 |
nervous system | 8.79e-10 | 75 |
ectoderm-derived structure | 4.11e-09 | 95 |
ectoderm | 4.11e-09 | 95 |
presumptive ectoderm | 4.11e-09 | 95 |
neural tube | 1.29e-08 | 52 |
neural rod | 1.29e-08 | 52 |
future spinal cord | 1.29e-08 | 52 |
neural keel | 1.29e-08 | 52 |
regional part of spinal cord | 1.41e-08 | 5 |
gray matter of spinal cord | 1.41e-08 | 5 |
ecto-epithelium | 3.61e-08 | 73 |
regional part of nervous system | 4.39e-08 | 54 |
pre-chordal neural plate | 4.56e-08 | 49 |
spinal cord | 4.94e-07 | 6 |
dorsal region element | 4.94e-07 | 6 |
dorsum | 4.94e-07 | 6 |
regional part of forebrain | 7.19e-07 | 39 |
forebrain | 7.19e-07 | 39 |
future forebrain | 7.19e-07 | 39 |
brain grey matter | 8.55e-07 | 29 |
regional part of telencephalon | 8.55e-07 | 29 |
telencephalon | 8.55e-07 | 29 |