FFCP PHASE1:Hg19::chrX:152773994..152774035,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:152773994..152774035,+ to FFCP PHASE1:Hg19::chrX:152773994..152774035,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=633 | |EntrezGene=633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1044 | |HGNC=1044 | ||
|TSSclassifier=strong | |||
|UniProt=P21810 | |UniProt=P21810 | ||
|association_with_transcript=118bp_to_U11686_5end | |||
|cluster_id=chrX:152773994..152774035,+ | |||
|coexpression_cluster_id=C288 | |||
|description=CAGE_peak_7_at_BGN_5end | |||
|id=chrX:152773994..152774035,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.29e-24!180;CL:0000057!4.24e-14!75;CL:0000183!1.19e-11!59;CL:0000680!3.40e-11!57;CL:0000056!3.40e-11!57;CL:0000355!3.40e-11!57;CL:0000187!3.71e-11!54;CL:0000222!5.17e-11!119;CL:0000359!5.72e-11!32;CL:0000393!3.70e-10!60;CL:0000211!3.70e-10!60;CL:0000192!1.95e-08!42;CL:0000514!1.95e-08!42;CL:0002494!2.62e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.17e-11;32!CL:0000327;4.86e-08;15!CL:0002620;7.22e-08;23!CL:0002494;3.92e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.48e-18,76;CL:0000359,3.90e-11,32;CL:0000327,4.87e-08,15;CL:0000048,5.53e-08,427;CL:0002620,6.84e-08,23;CL:0000723,1.83e-07,433;CL:0002494,2.81e-07,16;CL:0000034,8.32e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!3.59e-23!84;UBERON:0002049!5.85e-20!79;UBERON:0007798!5.85e-20!79;UBERON:0001009!4.30e-19!113;UBERON:0000055!8.65e-19!69;UBERON:0004535!2.68e-18!110;UBERON:0001981!1.09e-17!60;UBERON:0007500!1.09e-17!60;UBERON:0004537!1.09e-17!60;UBERON:0006965!1.09e-17!60;UBERON:0001637!1.16e-15!42;UBERON:0003509!1.16e-15!42;UBERON:0004572!1.16e-15!42;UBERON:0003914!6.59e-14!118;UBERON:0000477!3.68e-13!286;UBERON:0004573!3.40e-12!33;UBERON:0004571!3.40e-12!33;UBERON:0004111!4.04e-12!241;UBERON:0007100!3.64e-11!27;UBERON:0002385!7.74e-11!63;UBERON:0001015!7.74e-11!63;UBERON:0000383!7.74e-11!63;UBERON:0001134!8.28e-11!61;UBERON:0002036!8.28e-11!61;UBERON:0003082!8.28e-11!61;UBERON:0000025!1.04e-10!194;UBERON:0000914!1.24e-10!83;UBERON:0002329!1.24e-10!83;UBERON:0003077!1.24e-10!83;UBERON:0003059!1.24e-10!83;UBERON:0007282!1.24e-10!83;UBERON:0009618!1.24e-10!83;UBERON:0007285!1.24e-10!83;UBERON:0000948!1.81e-10!24;UBERON:0005498!1.81e-10!24;UBERON:0004140!1.81e-10!24;UBERON:0009881!1.81e-10!24;UBERON:0004141!1.81e-10!24;UBERON:0003084!1.81e-10!24;UBERON:0007005!1.81e-10!24;UBERON:0004139!1.81e-10!24;UBERON:0004291!1.81e-10!24;UBERON:0004290!7.21e-10!70;UBERON:0000475!4.40e-09!365;UBERON:0000947!4.30e-08!21;UBERON:0010191!4.30e-08!21;UBERON:0000119!7.89e-08!312;UBERON:0005256!1.33e-07!143;UBERON:0000486!2.96e-07!82;UBERON:0000483!4.82e-07!309;UBERON:0000490!6.15e-07!138;UBERON:0000468!9.95e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;6.95e-11;42!UBERON:0003509;6.95e-11;42!UBERON:0004572;6.95e-11;42!UBERON:0004573;1.94e-10;33!UBERON:0004571;1.94e-10;33!UBERON:0007100;2.62e-10;25!UBERON:0000948;5.07e-10;22!UBERON:0000055;1.71e-07;65!UBERON:0007500;3.37e-07;56!UBERON:0001981;3.37e-07;56!UBERON:0004537;3.37e-07;56!UBERON:0000947;4.82e-07;21!UBERON:0010191;4.82e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,1.08e-21,83;UBERON:0001009,1.60e-16,112;UBERON:0004535,6.21e-16,109;UBERON:0002049,1.40e-15,78;UBERON:0007798,1.40e-15,78;UBERON:0000055,2.00e-15,68;UBERON:0007500,2.70e-15,59;UBERON:0001981,2.70e-15,59;UBERON:0004537,2.70e-15,59;UBERON:0006965,2.70e-15,59;UBERON:0001637,6.84e-15,42;UBERON:0003509,6.84e-15,42;UBERON:0004572,6.84e-15,42;UBERON:0003914,1.42e-13,117;UBERON:0004573,1.53e-11,33;UBERON:0004571,1.53e-11,33;UBERON:0007100,1.60e-10,27;UBERON:0000948,4.40e-10,24;UBERON:0005498,4.40e-10,24;UBERON:0004140,4.40e-10,24;UBERON:0009881,4.40e-10,24;UBERON:0004141,4.40e-10,24;UBERON:0003084,4.40e-10,24;UBERON:0007005,4.40e-10,24;UBERON:0004139,4.40e-10,24;UBERON:0004291,4.40e-10,24;UBERON:0002199,4.45e-08,46;UBERON:0002416,4.45e-08,46;UBERON:0000947,4.43e-07,21;UBERON:0010191,4.43e-07,21;UBERON:0002097,4.99e-07,41 | |||
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| ||
|short_description=p7@BGN | |||
}} | }} |
Latest revision as of 00:07, 20 September 2015
Short description: | p7@BGN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_BGN_5end |
Coexpression cluster: | C288_Chondrocyte_Renal_Pericytes_Fibroblast_aorta_Smooth_Meningeal |
Association with transcript: | 118bp_to_U11686_5end |
EntrezGene: | BGN |
HGNC: | 1044 |
UniProt: | P21810 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.48e-18 | 76 |
vascular associated smooth muscle cell | 3.90e-11 | 32 |
extracellular matrix secreting cell | 4.87e-08 | 15 |
multi fate stem cell | 5.53e-08 | 427 |
skin fibroblast | 6.84e-08 | 23 |
somatic stem cell | 1.83e-07 | 433 |
cardiocyte | 2.81e-07 | 16 |
stem cell | 8.32e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 1.08e-21 | 83 |
circulatory system | 1.60e-16 | 112 |
cardiovascular system | 6.21e-16 | 109 |
vasculature | 1.40e-15 | 78 |
vascular system | 1.40e-15 | 78 |
vessel | 2.00e-15 | 68 |
epithelial tube open at both ends | 2.70e-15 | 59 |
blood vessel | 2.70e-15 | 59 |
blood vasculature | 2.70e-15 | 59 |
vascular cord | 2.70e-15 | 59 |
artery | 6.84e-15 | 42 |
arterial blood vessel | 6.84e-15 | 42 |
arterial system | 6.84e-15 | 42 |
epithelial tube | 1.42e-13 | 117 |
systemic artery | 1.53e-11 | 33 |
systemic arterial system | 1.53e-11 | 33 |
primary circulatory organ | 1.60e-10 | 27 |
heart | 4.40e-10 | 24 |
primitive heart tube | 4.40e-10 | 24 |
primary heart field | 4.40e-10 | 24 |
anterior lateral plate mesoderm | 4.40e-10 | 24 |
heart tube | 4.40e-10 | 24 |
heart primordium | 4.40e-10 | 24 |
cardiac mesoderm | 4.40e-10 | 24 |
cardiogenic plate | 4.40e-10 | 24 |
heart rudiment | 4.40e-10 | 24 |
integument | 4.45e-08 | 46 |
integumental system | 4.45e-08 | 46 |
aorta | 4.43e-07 | 21 |
aortic system | 4.43e-07 | 21 |
skin of body | 4.99e-07 | 41 |