FFCP PHASE1:Hg19::chrX:150565696..150565714,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chrX:150565696..150565714,+ to FFCP PHASE1:Hg19::chrX:150565696..150565714,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=203547 | |EntrezGene=203547 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22082 | |HGNC=22082 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc004feu.2_5end | |||
|cluster_id=chrX:150565696..150565714,+ | |||
|description=CAGE_peak_2_at_VMA21_5end | |||
|id=chrX:150565696..150565714,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.42e-14!112;CL:0000049!1.42e-14!112;CL:0000037!3.81e-13!172;CL:0000566!3.81e-13!172;CL:0000988!4.95e-13!182;CL:0002032!7.78e-13!165;CL:0000837!7.78e-13!165;CL:0000839!3.20e-10!70;CL:0002194!7.31e-10!63;CL:0000576!7.31e-10!63;CL:0000040!7.31e-10!63;CL:0000559!7.31e-10!63;CL:0000557!8.71e-10!71;CL:0002009!9.26e-10!65;CL:0000063!5.33e-09!578;CL:0000860!3.46e-08!45;CL:0002031!3.95e-08!124;CL:0000012!5.96e-08!682;CL:0002087!1.01e-07!119;CL:0000548!1.27e-07!679;CL:0000004!1.27e-07!679;CL:0000255!1.27e-07!679;CL:0002057!3.59e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.57e-07;33!CL:0002057;1.57e-07;33!CL:0000473;2.61e-07;39!CL:0000234;2.61e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.48e-13,108;CL:0000049,1.48e-13,108;CL:0000037,3.10e-12,168;CL:0002032,6.29e-12,161;CL:0000837,6.29e-12,161;CL:0000988,7.66e-12,177;CL:0000839,3.02e-09,66;CL:0002194,7.01e-09,59;CL:0000576,7.01e-09,59;CL:0000040,7.01e-09,59;CL:0000559,7.01e-09,59;CL:0000557,7.92e-09,67;CL:0002009,8.71e-09,61;CL:0000473,3.67e-08,48;CL:0000234,3.67e-08,48;CL:0002031,2.39e-07,120;CL:0000860,3.59e-07,42;CL:0002057,3.59e-07,42;CL:0002087,5.98e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!6.23e-21!235;DOID:14566!7.37e-20!239;DOID:2531!8.26e-18!51;DOID:0060083!8.26e-18!51;DOID:1240!2.17e-15!39;DOID:8692!4.07e-13!31;DOID:0050686!3.83e-09!137;DOID:0050687!3.34e-08!143;DOID:305!1.10e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:8692;8.18e-13;31!DOID:1240;2.67e-12;39!DOID:2531;3.80e-11;51!DOID:0060083;3.80e-11;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,6.23e-21,235;DOID:14566,7.37e-20,239;DOID:2531,8.26e-18,51;DOID:0060083,8.26e-18,51;DOID:1240,2.17e-15,39;DOID:8692,4.07e-13,31;DOID:0050686,3.83e-09,137;DOID:0050687,3.34e-08,143;DOID:305,1.10e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0002371!2.03e-09!80;UBERON:0001474!2.86e-07!86 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.70e-08,76 | |||
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| ||
|short_description=p2@VMA21 | |||
}} | }} |
Latest revision as of 22:31, 19 September 2015
Short description: | p2@VMA21 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VMA21_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc004feu.2_5end |
EntrezGene: | VMA21 |
HGNC: | 22082 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.48e-13 | 108 |
common myeloid progenitor | 1.48e-13 | 108 |
hematopoietic stem cell | 3.10e-12 | 168 |
hematopoietic oligopotent progenitor cell | 6.29e-12 | 161 |
hematopoietic multipotent progenitor cell | 6.29e-12 | 161 |
hematopoietic cell | 7.66e-12 | 177 |
myeloid lineage restricted progenitor cell | 3.02e-09 | 66 |
monopoietic cell | 7.01e-09 | 59 |
monocyte | 7.01e-09 | 59 |
monoblast | 7.01e-09 | 59 |
promonocyte | 7.01e-09 | 59 |
granulocyte monocyte progenitor cell | 7.92e-09 | 67 |
macrophage dendritic cell progenitor | 8.71e-09 | 61 |
defensive cell | 3.67e-08 | 48 |
phagocyte | 3.67e-08 | 48 |
hematopoietic lineage restricted progenitor cell | 2.39e-07 | 120 |
classical monocyte | 3.59e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.59e-07 | 42 |
nongranular leukocyte | 5.98e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.70e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
cancer | 6.23e-21 | 235 |
disease of cellular proliferation | 7.37e-20 | 239 |
hematologic cancer | 8.26e-18 | 51 |
immune system cancer | 8.26e-18 | 51 |
leukemia | 2.17e-15 | 39 |
myeloid leukemia | 4.07e-13 | 31 |
organ system cancer | 3.83e-09 | 137 |
cell type cancer | 3.34e-08 | 143 |
carcinoma | 1.10e-07 | 106 |