FFCP PHASE1:Hg19::chr9:116226039..116226056,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:116226039..116226056,+ to FFCP PHASE1:Hg19::chr9:116226039..116226056,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5998 | |EntrezGene=5998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9999 | |HGNC=9999 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_ENST00000317613_5end | |||
|cluster_id=chr9:116226039..116226056,+ | |||
|coexpression_cluster_id=C4792 | |||
|description=CAGE_peak_11_at_RGS3_5end | |||
|id=chr9:116226039..116226056,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.01e-20!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.90e-16,253 | |||
|ontology_enrichment_development_v019=UBERON:0001041;2.41e-11;30!UBERON:0008947;1.67e-08;29 | |||
|ontology_enrichment_disease=DOID:305!1.04e-33!106;DOID:0050687!2.91e-30!143;DOID:162!3.59e-17!235;DOID:14566!4.25e-16!239;DOID:299!1.35e-12!25;DOID:0050615!1.28e-07!16;DOID:1324!5.13e-07!15;DOID:1325!5.77e-07!7;DOID:3904!5.77e-07!7;DOID:3119!6.11e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:305;1.12e-10;106!DOID:1325;1.51e-10;7!DOID:3904;1.51e-10;7!DOID:3119;3.31e-10;14!DOID:5093;8.60e-10;4!DOID:1612;8.60e-10;4!DOID:0050615;7.13e-09;16!DOID:299;8.72e-09;25!DOID:1324;9.43e-08;15 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.69e-26,106;DOID:0050687,3.13e-22,143;DOID:162,1.31e-15,235;DOID:14566,6.00e-15,239;DOID:1325,1.45e-10,7;DOID:3904,1.45e-10,7;DOID:3119,2.72e-10,14;DOID:5093,8.87e-10,4;DOID:1612,8.87e-10,4;DOID:299,5.85e-09,25;DOID:0050615,7.83e-09,16;DOID:1324,9.05e-08,15;DOID:7,3.99e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001007!3.28e-16!155;UBERON:0001555!3.28e-16!155;UBERON:0007026!3.28e-16!155;UBERON:0004119!1.75e-14!169;UBERON:0000925!1.75e-14!169;UBERON:0006595!1.75e-14!169;UBERON:0004921!2.67e-14!129;UBERON:0004185!2.67e-14!129;UBERON:0000077!2.82e-12!130;UBERON:0000481!5.39e-11!347;UBERON:0005911!9.18e-11!82;UBERON:0005177!3.90e-10!107;UBERON:0001048!1.64e-09!168;UBERON:0001041!2.98e-09!98;UBERON:0000466!3.43e-09!126;UBERON:0008947!1.73e-08!38;UBERON:0003258!1.73e-08!38;UBERON:0009569!1.21e-07!113;UBERON:0000058!2.18e-07!26;UBERON:0005153!2.43e-07!37;UBERON:0000062!3.23e-07!511;UBERON:0003929!4.13e-07!54;UBERON:0000464!5.85e-07!104;UBERON:0003064!7.60e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0002048;3.10e-07;22!UBERON:0000117;3.10e-07;22!UBERON:0000171;3.10e-07;22!UBERON:0000170;3.10e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,4.13e-11,82;UBERON:0001007,9.07e-11,145;UBERON:0001555,9.07e-11,145;UBERON:0007026,9.07e-11,145;UBERON:0004921,4.72e-10,118;UBERON:0004119,1.60e-09,160;UBERON:0000925,1.60e-09,160;UBERON:0006595,1.60e-09,160;UBERON:0005157,4.51e-08,47;UBERON:0005177,2.16e-07,101;UBERON:0005153,2.30e-07,37;UBERON:0002048,2.82e-07,22;UBERON:0000117,2.82e-07,22;UBERON:0000171,2.82e-07,22;UBERON:0000170,2.82e-07,22;UBERON:0005597,2.82e-07,22;UBERON:0000118,2.82e-07,22;UBERON:0009569,6.05e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.410623275218653,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.283604451492204,0.443458794925128,0.351339142772504,0.589405839739707,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07159673940896,1.57170560838319,0.563057402416611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0.70296429550139,0,0,0,0,0,0,0,0.491337269247072,0,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0.500474079487857,0,0,0,0.300476117813194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487894824518382,0.530119073285941,0.464775771478074,0.518305275076852,1.00928340350251,0,0,0,0,0,0,0.946454400318751,1.51726221070292,0.964044119533928,0.661763836394364,0,0.71181185733329,0.808987848960987,0.784885860501384,1.15424147083917,0,1.40241773803446,0,0,0,0.982827216677626,0,0,1.47586126251736,0,0,0,0,0,0,1.03993478527958,0,0.231860809950154,0,0.144366447761074,0,0,10.2726571734706,9.4433477830436,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,2.05461064305758,0,0,0.803701137152247,0.546273504020151,0,0.451199612907412,0.308061348417659,0.784349769176855,1.46139224653261,0.105551628892876,0,0,0.431831832204279,0,1.35473218771926,1.50506932156456,1.01950509218015,0,0.895499018888713,0,0,1.02580050046556,1.31205858279882,0,0.103041011647722,0,0.082509499920588,0,0,1.6068392984416,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767693373934002,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0.272999822815972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.43056302373444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.8071081061233,0,0,0.111443384277478,6.81926752335391,0,2.07875276582847,0,0,0,0.111308705022906,0,1.90012867315194,9.76315142430242,0.276283915531148,6.2983186963569,0.20453736500431,0,0,1.61763032065188,0.537063524026827,0,1.97286811273867,0,0,0,0.0927680981618513,0,6.77112178821606,7.08425999969185,0,0.227586896570999,5.33932665614809,5.43691668066254,5.17115059862197,5.24888304089858,0.868124974666461,0,0.723578631752448,0,0,0,0,0,1.11538995422883,0.230850775511391,0,0,0,1.84700532267414,0,0,0,0,0,0,0,0,0,0,0,0.843992258112108,1.14262965711403,4.66465135732005,0,2.98578579323551,0.707660516026713,1.83309043480088,0,0,0,0.337005664903385,0,0,0,0.19566461893209,2.91336455440911,0,1.20990716048664,0.61214552326098,0.126373159256976,0,0,0,0,0.313932918407225,2.38944859545918,0.284609546029793,0,0.347119476670262,0.587954384486266,0,0.873633341210151,0.687944129886466,3.09620260125072,3.36210858596454,3.61308011034121,2.03676934625681,0,0.451961481561065,0,0,0.0633107959558787,2.93327074102205,0.160317640503067,2.56143593687223,0.799238438328521,0.144090417154106,0,6.34901492089269,0,0.621262677827163,0.235694034616795,0.135904206073614,0.209205692624666,0,0,0,0,0,1.28929632425987,0,8.93703684071214,4.12488763221031,0,3.99358000997982,9.87219910714113,3.12440040418622,6.51679683121245,0,2.32991899054908,3.54524320382506,2.55489160981616,2.76354529802158,0.78741985211799,0,0,0.136203406111576,0.321506296930038,0.412618309791701,0,0,0.77380195455795,0.0607495566580247,0,1.02447419488958,0.891727998294968,0,0,0.191915197319445,16.4379925065874,3.31045985182716,0,0,0,0,1.19730191562487,0,0,0,0.293104467356165,0,0.258565912723101,0.26446520348538,0,5.63852017853338,0.747511887973863,1.57204305099666,1.24271716604159,0,0,0,0,0,0,0,0,1.09937867375164,0,0,0.1251909307065,0,0.776503360757966,0.124192805882767,1.10678907948985,0.249960815924213,0,0,0,3.27834434064817,1.44921028610825,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,2.14441591374926,0,0.226705925512272,0,0.244736704506468,3.40268798054826,4.94082315457555,1.31570429747224,0.530067437837643,0.964570191354574,2.19625172848994,1.02496607435179,3.45430341731199,0.607719912354764,0,0,0,0,0,0.245772908753719,0.845248493434508,0,0,0,0,0.184105950251841,0,0,0.639471856518258,0,0.157265941855896,1.96577348745625,0.848662649770126,0,0.123935764259002,0,0,0,2.40171224485641,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526472298444801,0,0,0,1.96526301012116,1.77427303460454,0.135075169236789,0,0,0.126831620387814,1.09394961803644,0,0.496211178389294,0.175871244359621,0.383287282918786,0,0.672567444437648,0,0,0.0887023701626388,0,0.514464028312255,0,0.0657727735628491,3.66400906740301,1.22354542081276,0.863424021355654,0,1.4013608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| ||
|short_description=p11@RGS3 | |||
}} | }} |
Latest revision as of 07:04, 20 September 2015
Short description: | p11@RGS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_RGS3_5end |
Coexpression cluster: | C4792_small_left_aorta_carcinoid_MCF7_adenocarcinoma_Renal |
Association with transcript: | 27bp_to_ENST00000317613_5end |
EntrezGene: | RGS3 |
HGNC: | 9999 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.90e-16 | 253 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 4.13e-11 | 82 |
digestive system | 9.07e-11 | 145 |
digestive tract | 9.07e-11 | 145 |
primitive gut | 9.07e-11 | 145 |
subdivision of digestive tract | 4.72e-10 | 118 |
endoderm-derived structure | 1.60e-09 | 160 |
endoderm | 1.60e-09 | 160 |
presumptive endoderm | 1.60e-09 | 160 |
epithelial fold | 4.51e-08 | 47 |
trunk region element | 2.16e-07 | 101 |
epithelial bud | 2.30e-07 | 37 |
lung | 2.82e-07 | 22 |
respiratory tube | 2.82e-07 | 22 |
respiration organ | 2.82e-07 | 22 |
pair of lungs | 2.82e-07 | 22 |
lung primordium | 2.82e-07 | 22 |
lung bud | 2.82e-07 | 22 |
subdivision of trunk | 6.05e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.69e-26 | 106 |
cell type cancer | 3.13e-22 | 143 |
cancer | 1.31e-15 | 235 |
disease of cellular proliferation | 6.00e-15 | 239 |
bronchus cancer | 1.45e-10 | 7 |
bronchogenic carcinoma | 1.45e-10 | 7 |
gastrointestinal system cancer | 2.72e-10 | 14 |
thoracic cancer | 8.87e-10 | 4 |
breast cancer | 8.87e-10 | 4 |
adenocarcinoma | 5.85e-09 | 25 |
respiratory system cancer | 7.83e-09 | 16 |
lung cancer | 9.05e-08 | 15 |
disease of anatomical entity | 3.99e-07 | 39 |