FFCP PHASE1:Hg19::chr8:95653327..95653364,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:95653327..95653364,+ to FFCP PHASE1:Hg19::chr8:95653327..95653364,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54845 | |EntrezGene=54845 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25966 | |HGNC=25966 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NXG1,E9PB47 | |UniProt=Q6NXG1,E9PB47 | ||
|association_with_transcript=0bp_to_ENST00000433389,NM_001034915,NM_001122825,NM_001122826,NM_001122827,NM_017697,uc003ygq.3,uc003ygr.3,uc003ygs.3,uc003ygt.3,uc003ygu.3_5end | |||
|cluster_id=chr8:95653327..95653364,+ | |||
|coexpression_cluster_id=C2933 | |||
|description=CAGE_peak_3_at_ESRP1_5end | |||
|id=chr8:95653327..95653364,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.29e-30!254;CL:0002076!2.68e-22!43;CL:0000223!1.82e-16!59;CL:0002251!6.09e-11!21;CL:0002368!9.40e-11!13;CL:0002159!1.39e-09!13;CL:0000082!3.33e-09!19;CL:0000039!1.47e-08!7;CL:0000586!1.47e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.25e-18;42!CL:0002251;5.40e-11;20!CL:0002368;9.91e-11;13!CL:0002159;6.82e-10;14!CL:0000039;1.11e-09;7!CL:0000586;1.11e-09;7!CL:0000240;5.66e-07;6!CL:0000311;5.66e-07;6!CL:0000079;5.66e-07;6!CL:0000237;5.66e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.72e-30,253;CL:0002076,4.60e-23,42;CL:0000223,1.39e-17,58;CL:0002251,5.17e-11,20;CL:0002368,1.07e-10,13;CL:0002159,5.99e-10,14;CL:0000039,1.09e-09,7;CL:0000586,1.09e-09,7;CL:0000240,5.79e-07,6;CL:0000311,5.79e-07,6;CL:0000079,5.79e-07,6;CL:0000237,5.79e-07,6;CL:0000036,5.79e-07,6;CL:0000357,5.79e-07,6;CL:0000114,5.79e-07,6;CL:0002077,6.76e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000223;3.71e-09;58!CL:0000357;5.66e-07;6!CL:0000114;5.66e-07;6 | |||
|ontology_enrichment_disease=DOID:305!6.31e-25!106;DOID:0050687!1.24e-17!143;DOID:1749!9.95e-15!14;DOID:299!9.09e-08!25;DOID:0050615!1.51e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.92e-17;14!DOID:299;2.63e-09;25!DOID:305;1.14e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.31e-23,106;DOID:1749,7.54e-17,14;DOID:0050687,6.01e-16,143;DOID:299,2.80e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.07e-26!169;UBERON:0000925!8.07e-26!169;UBERON:0006595!8.07e-26!169;UBERON:0001007!6.21e-19!155;UBERON:0001555!6.21e-19!155;UBERON:0007026!6.21e-19!155;UBERON:0001004!2.65e-18!72;UBERON:0004921!3.02e-16!129;UBERON:0004185!3.02e-16!129;UBERON:0000464!5.34e-16!104;UBERON:0000077!3.65e-15!130;UBERON:0005153!1.23e-14!37;UBERON:0000466!3.06e-13!126;UBERON:0005911!3.07e-13!82;UBERON:0005181!1.17e-12!35;UBERON:0005178!3.18e-12!34;UBERON:0002224!3.18e-12!34;UBERON:0000065!6.70e-12!53;UBERON:0000161!1.18e-11!35;UBERON:0005157!1.83e-11!51;UBERON:0002048!5.75e-11!22;UBERON:0000117!5.75e-11!22;UBERON:0000171!5.75e-11!22;UBERON:0000170!5.75e-11!22;UBERON:0005597!5.75e-11!22;UBERON:0000118!5.75e-11!22;UBERON:0000915!3.09e-10!52;UBERON:0004807!6.96e-10!28;UBERON:0001041!1.39e-09!98;UBERON:0005156!2.65e-09!59;UBERON:0000990!2.65e-09!59;UBERON:0004802!3.33e-09!19;UBERON:0000115!3.33e-09!19;UBERON:0000166!4.90e-09!21;UBERON:0008947!4.87e-08!38;UBERON:0003258!4.87e-08!38;UBERON:0003133!8.82e-08!48;UBERON:0000072!1.12e-07!46;UBERON:0000344!1.21e-07!12;UBERON:0003101!2.05e-07!22;UBERON:0000079!2.05e-07!22;UBERON:0005631!2.18e-07!14;UBERON:0000158!2.18e-07!14;UBERON:0004175!4.06e-07!25;UBERON:0005177!8.08e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;2.65e-10;33!UBERON:0005178;2.43e-09;34!UBERON:0002224;2.43e-09;34!UBERON:0005911;4.17e-09;36!UBERON:0004807;4.77e-09;22!UBERON:0005181;1.20e-08;35!UBERON:0001555;1.94e-08;54!UBERON:0002048;2.70e-08;22!UBERON:0000117;2.70e-08;22!UBERON:0000171;2.70e-08;22!UBERON:0000170;2.70e-08;22!UBERON:0000344;5.59e-08;20!UBERON:0005409;1.97e-07;22!UBERON:0000161;4.11e-07;19!UBERON:0000166;4.11e-07;19!UBERON:0000974;4.51e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.33e-23,160;UBERON:0000925,1.33e-23,160;UBERON:0006595,1.33e-23,160;UBERON:0001007,9.18e-18,145;UBERON:0001555,9.18e-18,145;UBERON:0007026,9.18e-18,145;UBERON:0004921,1.63e-14,118;UBERON:0001004,9.98e-14,74;UBERON:0005153,5.03e-12,37;UBERON:0005911,4.83e-11,82;UBERON:0005178,1.70e-10,34;UBERON:0002224,1.70e-10,34;UBERON:0005181,5.05e-10,35;UBERON:0005157,7.52e-10,47;UBERON:0000161,1.83e-09,36;UBERON:0000065,2.02e-09,54;UBERON:0000915,7.88e-09,52;UBERON:0002048,2.71e-08,22;UBERON:0000117,2.71e-08,22;UBERON:0000171,2.71e-08,22;UBERON:0000170,2.71e-08,22;UBERON:0005597,2.71e-08,22;UBERON:0000118,2.71e-08,22;UBERON:0001041,3.64e-08,87;UBERON:0000344,5.26e-08,20;UBERON:0000166,8.16e-08,22;UBERON:0005631,2.68e-07,14;UBERON:0000158,2.68e-07,14;UBERON:0005156,5.45e-07,59;UBERON:0000990,5.45e-07,59;UBERON:0008947,8.53e-07,38;UBERON:0003258,8.53e-07,38 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.982935746006035,6.97801167972428,4.58726881473362,4.22027165165526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,10.1136334692682,5.4217065380085,8.50434223383612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11332214173056,3.64295288292542,8.52804218404188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.66922267785295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.7552163087776,8.72787585890671,10.6117700293931,11.0996072577932,8.34937540425357,7.08783051504062,3.83545903556871,5.80337957013945,12.0442528495024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.44367627920718,0,12.9505336782178,5.62008766288098,5.12697759299317,9.35143296101149,0,0,0,0,0,0,0,0,8.69224837755203,5.15091697256924,0,0,0,5.62403003920662,8.06314215354526,11.9091081683605,7.9707085205535,4.94077695473735,4.98397482914775,0,0,0,0,0,0,0,0,5.13217338068116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,3.32870879020994,1.5119514666484,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,3.2632051389738,11.6293752775905,20.5340605327049,0,0,0,2.70719767744447,1.84836809050595,0,0,0.527758144464379,0,0,0,0,0,0,1.78413391131527,2.49322802678617,0.671624264166535,0,0,0,0,0,3.60643540767028,0,0,5.74265537996172,7.80072295243825,0,0,0,0,0,0,0,0,0,18.1813406897076,14.414255052383,10.9746932745342,22.5581851307876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0862073306696,3.35151137767894,6.53345909167936,3.38917682796405,6.88808596273968,5.05414427002877,6.20802214951346,14.7022976132454,0,0,0,0,0,0,0,0,0,0,8.57640755933611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,11.4155729649014,0,0,0,0,12.6534576910976,5.04839957415486,6.14321404198464,0,0,0,0,3.3780065300479,0.398495976502139,2.48655523978033,5.2905877049398,0.102268682502155,0,0,9.88551862620595,27.927303249395,0,1.57829449019094,0,0,0,0,0,10.6775382044946,23.5267399989766,2.17499872630438,15.020735173686,18.0520091707864,9.21911958894952,0,0,0.173624994933292,0,0,0,0,0,0,0,11.1538995422883,2.38545801361771,0,16.6006011159403,11.8480090620899,15.6452215567692,8.61303131276183,2.74792780205587,9.06159119231679,0,0,0,0,0,0,0,0,0,8.48810602427568,4.66465135732005,0,4.97630965539252,4.33442066066362,12.2206028986725,0,0,0,0,0.802577647298789,0,0,24.066748128647,0,11.4429476826323,2.41981432097328,0,0,0,0,0,0,0,0,10.8151627491321,0,7.63662848674576,14.012912830256,8.88003907120106,6.63961339319714,0,0,0,0,10.7657808302146,0,0.451961481561065,0,0,0,10.1686719022098,3.20635281006135,3.84215390530835,0,9.50996753217099,0,0,0,0.248505071130865,19.3269108385772,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,11.5813820289415,0,0,0.0671834724867263,0,9.31967596219631,0,0,0,0,0,0,0,13.0210050256666,10.7280760545842,12.0477698028464,0,3.86900977278975,0,5.36695500158826,2.52178263357434,2.8325477592899,0.105600336519406,0,10.36342065525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342173675768659,17.6203755579168,3.63077202730162,3.61569901729232,5.79934677486074,0.496166021811951,0,0,28.7253565996582,0,0,0,0,28.5838455175426,0,0,0,0,0,0.124192805882767,0,0,0,0,0,5.62001886968258,6.66636731609796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.7085880891455,0,0,0,0,0,24.1991548354639,10.5753134205605,0,0,0.314531883711793,0,0,0,0,0,0,0,6.40456598628376,0,0,0,0,0,0,0,0,0,0,10.5999535981108,8.13991091099409,7.70400113791052,11.3215152827331,0,0,0,0.300841313397029,0,9.37816813479711,7.59529413996125,0,7.24494822463522,0,0,0,0,0,8.22386650285773,0.992422356778588,0.351742488719241,15.459253744391,0,0,7.28358725083958,2.95960848756687,3.99160665731875,0,0,0,0,0.945550727071746,17.9082557046231,3.21821680687107,0,44.2830018035787,1.82631744101899,0,0,0,0,0,0,0,0.62164849248911,0.3414369541879,4.14755797088455,8.60454717640555,0,0,5.92741870267301,5.0403511079691,0,0,5.36906072629403,14.9188355095169,6.82740379900709,0,0,0,2.91426595835484,10.7612153192569,5.17272015419557,0,22.702162489831,0.219881033490858,7.85006786546702,3.39566295674957,1.96703604453562,7.52507674178437,0.490296643507811,11.0767977137764,0,0,0,0,0,0,0,27.4973065452713,9.88105640803937,21.9861344728321,7.30336388246517,6.88093925106811,0,0,0,0,2.645134202577,0,0,0,0,0.109265571963696,0,19.8878217996864,5.61156551057677,14.0599196288313,10.5297166502798,0.454672189309436,0,0,0,4.26467963801962,4.04709533488359,0.452122368852043,0.682821857254437,0,5.72824424503484,7.88257036937055,5.660635445321,2.73786640868225,5.85962861226911,3.65783247502649,2.32862249582209,8.46593993554135,0.106727345877715,0,0,4.69281884806909,0.488965776731466,5.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2896503181046,0.665756774185513,0.201273793591026,0 | ||
|short_description=p3@ESRP1 | |||
}} | }} |
Latest revision as of 13:06, 19 September 2015
Short description: | p3@ESRP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ESRP1_5end |
Coexpression cluster: | C2933_testicular_rectal_squamous_malignant_nasal_small_large |
Association with transcript: | 0bp_to_ENST00000433389, NM_001034915, NM_001122825, NM_001122826, NM_001122827, NM_017697, uc003ygq.3, uc003ygr.3, uc003ygs.3, uc003ygt.3, uc003ygu.3_5end |
EntrezGene: | ESRP1 |
HGNC: | 25966 |
UniProt: | Q6NXG1E9PB47 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.72e-30 | 253 |
endo-epithelial cell | 4.60e-23 | 42 |
endodermal cell | 1.39e-17 | 58 |
epithelial cell of alimentary canal | 5.17e-11 | 20 |
respiratory epithelial cell | 1.07e-10 | 13 |
general ecto-epithelial cell | 5.99e-10 | 14 |
germ line cell | 1.09e-09 | 7 |
germ cell | 1.09e-09 | 7 |
stratified squamous epithelial cell | 5.79e-07 | 6 |
keratin accumulating cell | 5.79e-07 | 6 |
stratified epithelial cell | 5.79e-07 | 6 |
keratinizing barrier epithelial cell | 5.79e-07 | 6 |
epithelial fate stem cell | 5.79e-07 | 6 |
stratified epithelial stem cell | 5.79e-07 | 6 |
surface ectodermal cell | 5.79e-07 | 6 |
ecto-epithelial cell | 6.76e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.33e-23 | 160 |
endoderm | 1.33e-23 | 160 |
presumptive endoderm | 1.33e-23 | 160 |
digestive system | 9.18e-18 | 145 |
digestive tract | 9.18e-18 | 145 |
primitive gut | 9.18e-18 | 145 |
subdivision of digestive tract | 1.63e-14 | 118 |
respiratory system | 9.98e-14 | 74 |
epithelial bud | 5.03e-12 | 37 |
endo-epithelium | 4.83e-11 | 82 |
thoracic cavity element | 1.70e-10 | 34 |
thoracic cavity | 1.70e-10 | 34 |
thoracic segment organ | 5.05e-10 | 35 |
epithelial fold | 7.52e-10 | 47 |
orifice | 1.83e-09 | 36 |
respiratory tract | 2.02e-09 | 54 |
thoracic segment of trunk | 7.88e-09 | 52 |
lung | 2.71e-08 | 22 |
respiratory tube | 2.71e-08 | 22 |
respiration organ | 2.71e-08 | 22 |
pair of lungs | 2.71e-08 | 22 |
lung primordium | 2.71e-08 | 22 |
lung bud | 2.71e-08 | 22 |
foregut | 3.64e-08 | 87 |
mucosa | 5.26e-08 | 20 |
oral opening | 8.16e-08 | 22 |
extraembryonic membrane | 2.68e-07 | 14 |
membranous layer | 2.68e-07 | 14 |
reproductive structure | 5.45e-07 | 59 |
reproductive system | 5.45e-07 | 59 |
respiratory primordium | 8.53e-07 | 38 |
endoderm of foregut | 8.53e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.31e-23 | 106 |
squamous cell carcinoma | 7.54e-17 | 14 |
cell type cancer | 6.01e-16 | 143 |
adenocarcinoma | 2.80e-09 | 25 |