FFCP PHASE1:Hg19::chr8:38261849..38261864,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr8:38261849..38261864,+ to FFCP PHASE1:Hg19::chr8:38261849..38261864,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=137994 | |EntrezGene=137994 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14648 | |HGNC=14648 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000530448_5end | |||
|cluster_id=chr8:38261849..38261864,+ | |||
|coexpression_cluster_id=C2011 | |||
|description=CAGE_peak_2_at_LETM2_5end | |||
|id=chr8:38261849..38261864,+ | |||
|ontology_enrichment_celltype=CL:0000220!4.94e-27!246;CL:0000066!2.23e-26!254;CL:0002321!2.86e-26!248;CL:0000548!8.22e-23!679;CL:0000004!8.22e-23!679;CL:0000255!8.22e-23!679;CL:0000012!4.37e-22!682;CL:0000222!6.19e-21!119;CL:0000076!6.03e-17!62;CL:0000003!1.93e-16!722;CL:0000144!5.13e-14!625;CL:0000055!2.44e-12!180;CL:0000213!3.19e-12!57;CL:0000215!3.19e-12!57;CL:0000063!5.18e-11!578;CL:0002371!3.48e-10!591;CL:0000077!4.13e-10!19;CL:0000680!7.54e-09!57;CL:0000056!7.54e-09!57;CL:0000355!7.54e-09!57;CL:0000183!1.70e-08!59;CL:0000187!1.74e-08!54;CL:0002076!2.92e-08!43;CL:0000192!8.85e-08!42;CL:0000514!8.85e-08!42;CL:0000359!2.88e-07!32;CL:0000393!4.90e-07!60;CL:0000211!4.90e-07!60;CL:0002078!7.75e-07!44;CL:0002139!9.25e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000077;7.03e-13;19!CL:0000076;1.42e-09;63!CL:0000213;1.42e-08;58!CL:0000215;1.42e-08;58!CL:0002368;9.57e-08;13!CL:0000349;1.36e-07;19!CL:0002076;3.01e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.54e-26,253;CL:0002321,4.63e-23,250;CL:0000076,1.18e-18,63;CL:0000222,4.81e-18,121;CL:0000213,1.95e-14,58;CL:0000215,1.95e-14,58;CL:0000077,7.14e-13,19;CL:0002076,3.75e-09,42;CL:0002368,1.34e-07,13;CL:0000349,2.27e-07,19;CL:0002078,3.53e-07,45 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:193!2.52e-07!29;DOID:120!3.07e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:120;3.84e-07;27!DOID:2394;5.69e-07;14!DOID:193;7.26e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:120,3.35e-07,27;DOID:2394,4.59e-07,14;DOID:193,6.50e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0002049!2.39e-13!79;UBERON:0007798!2.39e-13!79;UBERON:0003914!1.68e-12!118;UBERON:0004872!2.25e-12!84;UBERON:0000055!2.86e-12!69;UBERON:0000490!1.23e-11!138;UBERON:0001981!1.58e-11!60;UBERON:0007500!1.58e-11!60;UBERON:0004537!1.58e-11!60;UBERON:0006965!1.58e-11!60;UBERON:0005256!2.25e-10!143;UBERON:0001637!3.29e-10!42;UBERON:0003509!3.29e-10!42;UBERON:0004572!3.29e-10!42;UBERON:0000914!2.60e-09!83;UBERON:0002329!2.60e-09!83;UBERON:0003077!2.60e-09!83;UBERON:0003059!2.60e-09!83;UBERON:0007282!2.60e-09!83;UBERON:0009618!2.60e-09!83;UBERON:0007285!2.60e-09!83;UBERON:0004535!2.63e-09!110;UBERON:0000486!4.25e-09!82;UBERON:0001009!1.98e-08!113;UBERON:0000119!2.16e-08!312;UBERON:0000483!3.96e-08!309;UBERON:0004290!7.24e-08!70;UBERON:0003104!1.06e-07!238;UBERON:0009142!1.06e-07!238;UBERON:0004573!1.43e-07!33;UBERON:0004571!1.43e-07!33;UBERON:0001134!2.93e-07!61;UBERON:0002036!2.93e-07!61;UBERON:0003082!2.93e-07!61;UBERON:0003100!5.69e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0007500;2.03e-07;56!UBERON:0001981;2.03e-07;56!UBERON:0004537;2.03e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,1.10e-10,78;UBERON:0007798,1.10e-10,78;UBERON:0000055,2.25e-10,68;UBERON:0004872,5.43e-10,83;UBERON:0007500,1.40e-09,59;UBERON:0001981,1.40e-09,59;UBERON:0004537,1.40e-09,59;UBERON:0006965,1.40e-09,59;UBERON:0003914,1.10e-08,117;UBERON:0000490,1.49e-08,148;UBERON:0001637,3.25e-08,42;UBERON:0003509,3.25e-08,42;UBERON:0004572,3.25e-08,42;UBERON:0003100,1.05e-07,41;UBERON:0005631,1.41e-07,14;UBERON:0000158,1.41e-07,14;UBERON:0004535,1.81e-07,109;UBERON:0001009,7.01e-07,112 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0.872338524100369,0,1.26343974685366,0,2.21160542851358,0.697801167972428,2.18441372130172,2.37390280405608,0.247532705920093,0.662794751455832,4.70627602516243,3.01347264011988,3.65155045193687,2.43966399395253,0.123121058076788,0.816002764977012,0,0.572471974262113,1.09499540058307,0.753255837568817,0,0,0,0,0,0,10.1136334692682,9.93979531968225,5.17655614233503,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0.242584061187816,0,0,0,0.575384784644301,0.256160706529101,0,0,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0,0,0,0.290209238628584,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,1.44833593950726,0,0.443067789167242,0,2.68991771423918,3.38154303655683,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,2.01210257911091,0.383587685530591,1.80719576192283,0.50133791063589,1.73815822752988,0,0.973269740605272,0.850813354476611,1.55210578223795,1.66886092816939,0,4.00724817121796,2.59549109949101,0,0,0,0,0,0,3.7764857399674,1.72046919021225,3.12426451446835,3.39184765154406,5.45349267072878,3.85165258716094,3.76190939766259,1.03366703667732,2.49036383880697,0,6.0424397566372,15.2054421143703,0.732186172644509,6.25027236587977,0.81014194788176,2.23249320710199,2.69435247151404,4.16662477788292,0,8.54339093611316,0.916008719652036,0,0,7.41359888642308,0,0.886413581652058,1.45650098894541,0,2.83734705758686,5.60677600142307,3.20246987189115,3.7000132262574,0.622422070799533,2.69421344139376,4.25000948094993,0.151357427644931,0,4.68642863667593,0.936480230490962,3.4228309292667,0.747243402759005,2.81842796745036,1.29498355494505,2.10676210053373,0.816616685019573,3.0708579327942,0.309977343527296,0,0,10.9219363432563,1.43723628363248,0.336672227908132,2.25213335769535,3.3247693858102,0.438977620880838,0.30648779579902,0.150238058906597,4.53728732640084,2.51145489964407,0.640672166455702,0,2.10063767259082,1.8549455262919,0.515281080091258,0,0.506328996723799,0.584622030967192,1.00973509697646,0.552299391853796,0.161646056818812,0.710019185033229,1.41052937518696,2.03472710772585,17.7799984910233,19.6377206825401,9.17774705244812,0,0,0,0,0,0,0,0,2.76269842704961,0,0,0.473227200159376,0.674338760312407,0.964044119533928,1.43382164552112,1.96091499683166,2.13543557199987,0.943819157121151,0.784885860501384,2.30848294167834,1.4763109092493,7.01208869017229,0.8231480226628,0,0,0,0,0,1.10689594688802,5.83330555014987,11.9627811095402,11.240175325762,0.301586917234893,10.0921405222797,2.6064664424826,17.6788913497528,0,0.231860809950154,2.23076519048061,2.88732895522148,2.77791307545966,0.951270761172991,0,0,0,0,0,39.3682102744463,16.4622485634882,18.5725377387526,12.0008420421817,6.39394664730716,6.51750554580859,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,3.25180144601546,0,4.76698857836175,1.03417372606222,0,8.45302752556,1.06375246633948,1.04007436911366,5.40135485950498,4.25547396069835,10.1240428026118,0,0.542621605391443,2.46972101034231,9.44634934451832,0.710783897485092,5.543663110534,6.02878754119172,13.9445353376047,9.69738014465953,0,0,0,3.11512312139057,0,5.70547620162874,2.31650090668127,1.02738161275192,0.537182889719687,0,0.197030760201927,0,0,0,0,0,0.335032530668698,1.27587750330633,0,0,0,0.24538298343828,0,0.813795071099207,0.415941723061614,1.24900292158013,1.26161932027148,1.05427273493442,0.300946099727719,0,1.03473071292505,2.65690239414175,1.29058417979192,0.781952530212746,0,0,0,0,0,3.63753085735511,4.99306318531491,2.41912234663744,0.248107807818777,0.306923946576125,0,0.128139149255701,0,0.482561763430822,0,3.85524234506639,2.66342587969691,4.02423064467665,10.3850885836724,3.60252173225874,0,11.0278558666807,2.76242966807689,3.21480454860899,4.00600569614778,0.262248829918848,1.80479845162965,0.616122696835318,0.784349769176855,2.92278449306521,0.949964660035881,0,5.61309227412502,3.88648648983851,1.54227252690289,2.16757150035082,2.50844886927427,2.80363900349542,4.98645605357235,2.46262230194396,0,0,0,0.984043937099117,0.325378394664303,0.309123034943167,0.27470839445503,0.082509499920588,11.4853107599234,10.4009639365843,0,1.06337790121334,3.08097234229289,1.68854042198743,2.61889487720608,0.322260734604821,0.725083469571143,1.19317278382541,0,7.76839102196597,7.87979276196935,8.16721359965339,2.023155617111,1.39453664789186,0.31481234683064,1.3940745403212,1.23213432070436,9.04920251538937,6.08953094452551,0.55597265731176,0.429374660225974,0,1.2655176988749,0.953150969619124,1.27948895655667,0,0.636406495851874,1.56989728039846,0.719489830333259,0,0.589062011728432,13.3440437838389,1.58510321173008,3.79132610615083,2.92580243453754,2.43713489631284,2.11300293513511,0.545999645631943,0.565621727814851,1.13008116620243,2.2054613741845,0.66343897524122,0.438450885253763,1.73632660280006,0.655894752046633,1.62328301570163,2.16876448669825,3.09865162785466,5.73645408816206,1.67023369722306,1.78335525740625,2.83808851256478,0,0,3.03578539012572,1.74967360122491,5.3884383126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| ||
|short_description=p2@LETM2 | |||
}} | }} |
Latest revision as of 03:35, 18 September 2015
Short description: | p2@LETM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LETM2_5end |
Coexpression cluster: | C2011_mucinous_mesothelioma_squamous_glioblastoma_anaplastic_Mallassezderived_amniotic |
Association with transcript: | 0bp_to_ENST00000530448_5end |
EntrezGene: | LETM2 |
HGNC: | 14648 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.54e-26 | 253 |
embryonic cell | 4.63e-23 | 250 |
squamous epithelial cell | 1.18e-18 | 63 |
mesodermal cell | 4.81e-18 | 121 |
lining cell | 1.95e-14 | 58 |
barrier cell | 1.95e-14 | 58 |
mesothelial cell | 7.14e-13 | 19 |
endo-epithelial cell | 3.75e-09 | 42 |
respiratory epithelial cell | 1.34e-07 | 13 |
extraembryonic cell | 2.27e-07 | 19 |
meso-epithelial cell | 3.53e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.10e-10 | 78 |
vascular system | 1.10e-10 | 78 |
vessel | 2.25e-10 | 68 |
splanchnic layer of lateral plate mesoderm | 5.43e-10 | 83 |
epithelial tube open at both ends | 1.40e-09 | 59 |
blood vessel | 1.40e-09 | 59 |
blood vasculature | 1.40e-09 | 59 |
vascular cord | 1.40e-09 | 59 |
epithelial tube | 1.10e-08 | 117 |
unilaminar epithelium | 1.49e-08 | 148 |
artery | 3.25e-08 | 42 |
arterial blood vessel | 3.25e-08 | 42 |
arterial system | 3.25e-08 | 42 |
female organism | 1.05e-07 | 41 |
extraembryonic membrane | 1.41e-07 | 14 |
membranous layer | 1.41e-07 | 14 |
cardiovascular system | 1.81e-07 | 109 |
circulatory system | 7.01e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 3.35e-07 | 27 |
ovarian cancer | 4.59e-07 | 14 |
reproductive organ cancer | 6.50e-07 | 29 |