FFCP PHASE1:Hg19::chr7:45026200..45026270,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:45026200..45026270,- to FFCP PHASE1:Hg19::chr7:45026200..45026270,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=285958 | |EntrezGene=285958 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=27797 | |HGNC=27797 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_NR_003697,uc003tmk.3,uc003tml.3_5end | |||
|cluster_id=chr7:45026200..45026270,- | |||
|coexpression_cluster_id=C19 | |||
|description=CAGE_peak_1_at_SNHG15_5end | |||
|id=chr7:45026200..45026270,- | |||
|ontology_enrichment_celltype=CL:0000037!5.83e-33!172;CL:0000566!5.83e-33!172;CL:0000988!1.47e-32!182;CL:0002032!8.57e-30!165;CL:0000837!8.57e-30!165;CL:0000738!4.91e-24!140;CL:0002087!1.44e-22!119;CL:0002031!3.12e-19!124;CL:0000542!4.31e-17!53;CL:0000051!4.31e-17!53;CL:0000860!1.10e-16!45;CL:0000838!1.23e-16!52;CL:0002057!2.57e-16!42;CL:0000063!3.08e-14!578;CL:0000763!1.71e-13!112;CL:0000049!1.71e-13!112;CL:0000003!6.91e-11!722;CL:0000012!1.65e-10!682;CL:0000548!1.20e-09!679;CL:0000004!1.20e-09!679;CL:0000255!1.20e-09!679;CL:0000084!1.95e-09!25;CL:0000827!1.95e-09!25;CL:0000945!1.97e-07!24;CL:0000826!1.97e-07!24;CL:0002009!2.70e-07!65;CL:0000557!9.01e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.57e-10;33!CL:0002057;1.57e-10;33!CL:0000542;2.49e-10;53!CL:0000084;1.94e-09;25!CL:0002087;5.61e-09;104!CL:0000576;7.63e-08;48!CL:0000945;2.05e-07;24!CL:0000988;9.33e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,6.11e-33,168;CL:0000988,1.73e-32,177;CL:0002032,9.12e-30,161;CL:0000837,9.12e-30,161;CL:0000738,5.00e-24,136;CL:0002087,1.29e-22,115;CL:0002031,3.24e-19,120;CL:0000542,4.31e-17,53;CL:0000051,4.31e-17,53;CL:0000838,1.23e-16,52;CL:0000860,2.57e-16,42;CL:0002057,2.57e-16,42;CL:0000763,1.97e-13,108;CL:0000049,1.97e-13,108;CL:0000473,6.01e-11,48;CL:0000234,6.01e-11,48;CL:0000084,1.95e-09,25;CL:0000827,1.95e-09,25;CL:0000945,1.97e-07,24;CL:0000826,1.97e-07,24;CL:0002009,3.05e-07,61 | |||
|ontology_enrichment_development_v019=CL:0002057;6.61e-12;42!CL:0000051;2.49e-10;53 | |||
|ontology_enrichment_disease=DOID:162!1.79e-17!235;DOID:14566!4.75e-17!239;DOID:2531!4.85e-15!51;DOID:0060083!4.85e-15!51;DOID:1240!2.93e-12!39;DOID:0050686!2.21e-11!137;DOID:8692!4.27e-09!31;DOID:0050687!1.48e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.02e-09;39!DOID:2531;1.17e-09;51!DOID:0060083;1.17e-09;51!DOID:8692;6.21e-09;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.79e-17,235;DOID:14566,4.75e-17,239;DOID:2531,4.85e-15,51;DOID:0060083,4.85e-15,51;DOID:1240,2.93e-12,39;DOID:0050686,2.21e-11,137;DOID:8692,4.27e-09,31;DOID:0050687,1.48e-07,143 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@SNHG15 | |||
}} | }} |
Latest revision as of 18:32, 18 September 2015
Short description: | p1@SNHG15 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNHG15_5end |
Coexpression cluster: | C19_embryonic_testis_cord_chronic_CD14_NK_mesothelioma |
Association with transcript: | 0bp_to_NR_003697, uc003tmk.3, uc003tml.3_5end |
EntrezGene: | SNHG15 |
HGNC: | 27797 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 6.11e-33 | 168 |
hematopoietic cell | 1.73e-32 | 177 |
hematopoietic oligopotent progenitor cell | 9.12e-30 | 161 |
hematopoietic multipotent progenitor cell | 9.12e-30 | 161 |
leukocyte | 5.00e-24 | 136 |
nongranular leukocyte | 1.29e-22 | 115 |
hematopoietic lineage restricted progenitor cell | 3.24e-19 | 120 |
lymphocyte | 4.31e-17 | 53 |
common lymphoid progenitor | 4.31e-17 | 53 |
lymphoid lineage restricted progenitor cell | 1.23e-16 | 52 |
classical monocyte | 2.57e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.57e-16 | 42 |
myeloid cell | 1.97e-13 | 108 |
common myeloid progenitor | 1.97e-13 | 108 |
defensive cell | 6.01e-11 | 48 |
phagocyte | 6.01e-11 | 48 |
T cell | 1.95e-09 | 25 |
pro-T cell | 1.95e-09 | 25 |
lymphocyte of B lineage | 1.97e-07 | 24 |
pro-B cell | 1.97e-07 | 24 |
macrophage dendritic cell progenitor | 3.05e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.79e-17 | 235 |
disease of cellular proliferation | 4.75e-17 | 239 |
hematologic cancer | 4.85e-15 | 51 |
immune system cancer | 4.85e-15 | 51 |
leukemia | 2.93e-12 | 39 |
organ system cancer | 2.21e-11 | 137 |
myeloid leukemia | 4.27e-09 | 31 |
cell type cancer | 1.48e-07 | 143 |