FFCP PHASE1:Hg19::chr6:6004249..6004271,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:6004249..6004271,- to FFCP PHASE1:Hg19::chr6:6004249..6004271,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51299 | |EntrezGene=51299 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=17972 | |HGNC=17972 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=5bp_to_uc003mwt.2_5end | |||
|cluster_id=chr6:6004249..6004271,- | |||
|description=CAGE_peak_3_at_NRN1_5end | |||
|id=chr6:6004249..6004271,- | |||
|ontology_enrichment_celltype=CL:0000115!1.12e-15!35;CL:0002139!2.34e-15!24;CL:0000071!8.21e-11!18;CL:0002546!8.21e-11!18;CL:0002078!1.46e-10!44 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.24e-21;24!CL:0000115;9.07e-18;36!CL:0000071;1.66e-14;18!CL:0002078;2.51e-09;45!CL:0002138;1.67e-08;6!CL:0002543;2.13e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.94e-21,24;CL:0000115,8.00e-21,36;CL:0002078,1.58e-14,45;CL:0000071,2.38e-14,18;CL:0002546,2.38e-14,18;CL:0000213,4.05e-09,58;CL:0000215,4.05e-09,58;CL:0005020,1.75e-08,6;CL:0002138,1.75e-08,6;CL:0005022,1.75e-08,6;CL:0002543,2.11e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;1.66e-14;18!CL:0005022;1.67e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.81e-18!115;UBERON:0001986!8.21e-11!18;UBERON:0004638!8.21e-11!18;UBERON:0004852!8.21e-11!18;UBERON:0000955!4.54e-08!69;UBERON:0006238!4.54e-08!69;UBERON:0001049!1.56e-07!57;UBERON:0005068!1.56e-07!57;UBERON:0006241!1.56e-07!57;UBERON:0007135!1.56e-07!57;UBERON:0000487!2.07e-07!22;UBERON:0000073!3.43e-07!94;UBERON:0001016!3.43e-07!94;UBERON:0002346!5.00e-07!90;UBERON:0001017!8.59e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;1.66e-14;18!UBERON:0001986;1.66e-14;18!UBERON:0004852;1.66e-14;18!UBERON:0000487;7.73e-11;22!UBERON:0006914;6.77e-09;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.38e-14,18;UBERON:0001986,2.38e-14,18;UBERON:0004852,2.38e-14,18;UBERON:0000487,1.02e-10,22;UBERON:0006914,8.49e-09,25;UBERON:0007023,1.01e-08,114 | |||
|phase1_expression=1.99846217197612,1.71280419112787,0,3.00219895059391,0,0,2.53299878168311,1.89515962028049,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.286235987131057,0.684372125364421,0,1.45185470921107,2.46301768349837,2.20390187678302,0,0,0,0.919421224478927,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0.32389366601898,0,0.290796477559129,0,0,0.697287110717054,0,0,0.863077176966451,0.512321413058201,0.47296445977717,0.344745680736619,0,0,0.564727018627814,0,0,0.306083892370903,0,0.639337125799041,1.64925650093358,0.398927315243264,0.426224750532694,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0,0,0,0,0.112328631146495,0.150176892841506,0.48217676009124,0,0,0,0,0.546138611262131,0,0.426730222566507,0,0,0.661044872784862,0,0,0,0,0,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0.384273959177026,0.260118695119756,0.657751618414705,0.276350017785848,0.579606171470105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69870898099936,2.00535164254356,1.88300474649071,0.795285947051099,1.94653948121054,0.378139268656271,0.221729397462564,0.263504357079378,0.916853528483988,0.728590576585084,0.741568885568859,0.324547393654683,0,0.531831842075461,0,0,0,1.19257444420023,0.860234595106124,3.12426451446835,0,2.09749718104953,12.9305479711832,2.71693456497854,8.78616981175718,7.47109151642091,7.02913286805807,14.9046847330384,9.12326526862215,20.9893369491426,12.5005447317595,9.72170337458112,8.03697554556718,8.53211615979445,4.39184773884957,3.06633274931766,3.79706263827252,3.66403487860815,0,0,0,1.49091585508596,0,0,0,0,0,0,0,0,0,0,0,0,0,0.936480230490962,1.71141546463335,2.39117888882882,1.40921398372518,1.94247533241758,1.82586048712923,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0.150238058906597,0,1.61450672119976,0.213557388818567,0.635795703478686,0.600182192168805,1.23663035086127,1.54584324027377,1.30281799432113,2.19409231913646,2.04617710838517,0.757301322732344,0.276149695926898,0,0,0.604512589365842,0,0,0,0,0,0.132529768321485,0.116193942869518,0,0,0,0,0.643240938192885,5.52539685409922,3.25057549622385,2.16563844500876,0,0,0,0,0,0,0,0,0,13.2867981832437,2.80483547606892,0,0,0,0,0.590789906681404,3.09024169590255,0,0,0.219500570817251,0,0.201057944823262,0,0.651616610620649,2.07986957055916,0,0.115930404975077,0.117408694235822,13.2817131940188,15.2785219150282,14.8398238742987,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0,0,3.381211010224,0,0,0.771622122786426,1.41849132023278,1.8649552531127,0,0,0,0.977208552881205,0,0,0,0,0,0,0,0,1.4377491329495,2.29723871668228,0,0.144781306667579,0.205476322550383,0.537182889719687,0,0.197030760201927,0,0,0,0,0,0.502548796003046,0,2.24702107184155,0,0.828831026872071,0,0,0,0,0,0,0,0.601892199455438,0,0,0.664225598535437,0.921845842708516,0.173767228936166,0.391602314925481,0,0.206768026122887,0,0,0,0,0,1.73675465473144,0.61384789315225,1.68396056659844,0,1.02341449813341,0,0,1.69630663182921,0.710246901252508,0.98552587216571,0,1.62694529843943,0,0,0,0,0,0,0,0.231046011313244,0,0,0,14.7853399292166,14.1177775379508,2.59099099322567,7.71136263451447,0,1.00337954770971,0.254876273045038,0,0,0,0,0,0,0,2.26690225624989,2.28923662045859,1.89771849817352,0,0,0,0.193341436584244,0.924291702687866,0.460511024178389,0.137836572484531,1.18162269355101,1.0151168573996,0.93749290157711,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.949138274156178,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0.75894634753143,0.699869440489966,0,0,0,1.31801321087491,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,3.43056302373444,0,10.9644601862098,0,5.89877209096643,0.399158742865633,0.766021480529467,0,7.14168268604022,0,0,8.7740741632893,7.51903431270201,0,13.9711625340219,0,0,0,3.07240764308458,4.2498460499559,3.67068111766199,0,0,0,0,0,0,0,5.71381899160387,0,0.891547074219827,0,0,0,0,0.994147647766298,1.26602474769461,0,0,0,0.398495976502139,0,0,3.37486652257111,5.16956182936492,0,0,0,0,1.57829449019094,4.7896618469388,0,0.969332746095218,1.20598527610407,0,0,0,6.52499617891314,0,0,0.472775363535873,0.344743373241465,1.45802306691627,1.21537496453305,0.885741385813839,0.60298219312704,0,2.10100593869327,2.65992857058193,0.219385397153973,0,0,2.07765697960252,0,5.30296980092538,8.16794564128926,5.3237212241784,0.31900115973192,0.457987967009312,4.26427820814908,11.241262801531,0,1.32969345520125,0,0,0,0,0,0,0,0,1.29833183845255,0,1.50377859655677,1.83309043480088,2.07564790076435,3.33622635155558,1.77517314159274,0.67401132980677,2.40773294189637,0.702793337176017,0,0,0,0.394584402849391,0,0.30607276163049,1.39010475182674,4.0587323241913,3.5253985075064,0,0,0,0,0.284609546029793,0,1.21491816834592,0,0,1.92199335066233,0.171986032471617,0,0,0,1.84279131327997,0,0.451961481561065,0,3.37814839895082,0.759729551470544,4.49768180290047,0,0.85381197895741,0,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| ||
|short_description=p3@NRN1 | |||
}} | }} |
Latest revision as of 11:22, 19 September 2015
Short description: | p3@NRN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NRN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_uc003mwt.2_5end |
EntrezGene: | NRN1 |
HGNC: | 17972 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.94e-21 | 24 |
endothelial cell | 8.00e-21 | 36 |
meso-epithelial cell | 1.58e-14 | 45 |
blood vessel endothelial cell | 2.38e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.38e-14 | 18 |
lining cell | 4.05e-09 | 58 |
barrier cell | 4.05e-09 | 58 |
lymphangioblast | 1.75e-08 | 6 |
endothelial cell of lymphatic vessel | 1.75e-08 | 6 |
vascular lymphangioblast | 1.75e-08 | 6 |
vein endothelial cell | 2.11e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.38e-14 | 18 |
endothelium | 2.38e-14 | 18 |
cardiovascular system endothelium | 2.38e-14 | 18 |
simple squamous epithelium | 1.02e-10 | 22 |
squamous epithelium | 8.49e-09 | 25 |
adult organism | 1.01e-08 | 114 |