FFCP PHASE1:Hg19::chr6:160101477..160101493,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:160101477..160101493,- to FFCP PHASE1:Hg19::chr6:160101477..160101493,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6648 | |EntrezGene=6648 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |HGNC=11180 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-74bp_to_uc003qsf.3_5end | |||
|cluster_id=chr6:160101477..160101493,- | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_19_at_SOD2_5end | |||
|id=chr6:160101477..160101493,- | |||
|ontology_enrichment_celltype=CL:0002057!1.91e-25!42;CL:0000860!2.24e-23!45;CL:0002194!4.78e-21!63;CL:0000576!4.78e-21!63;CL:0000040!4.78e-21!63;CL:0000559!4.78e-21!63;CL:0000766!2.11e-20!76;CL:0002009!9.28e-20!65;CL:0000839!2.14e-18!70;CL:0000557!5.51e-17!71;CL:0000763!1.45e-10!112;CL:0000049!1.45e-10!112;CL:0002087!1.15e-07!119;CL:0000738!4.79e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.70e-47;33!CL:0002057;9.70e-47;33!CL:0000473;5.01e-34;39!CL:0000234;5.01e-34;39!CL:0000576;6.57e-23;48!CL:0000766;4.05e-19;69!CL:0000775;1.25e-09;3!CL:0000094;3.33e-09;8!CL:0002623;1.37e-08;3!CL:0000763;1.91e-08;100!CL:0000154;3.23e-07;6!CL:0000771;4.85e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.20e-45,42;CL:0002057,8.20e-45,42;CL:0000473,2.89e-41,48;CL:0000234,2.89e-41,48;CL:0000766,1.29e-35,72;CL:0002194,2.26e-31,59;CL:0000576,2.26e-31,59;CL:0000040,2.26e-31,59;CL:0000559,2.26e-31,59;CL:0002009,4.24e-30,61;CL:0000839,2.99e-27,66;CL:0000557,9.89e-27,67;CL:0000763,9.04e-21,108;CL:0000049,9.04e-21,108;CL:0000738,1.07e-14,136;CL:0002087,1.74e-12,115;CL:0002031,1.14e-11,120;CL:0002032,4.18e-11,161;CL:0000837,4.18e-11,161;CL:0000037,2.67e-10,168;CL:0000775,1.51e-09,3;CL:0000988,2.30e-09,177;CL:0000094,3.52e-09,8;CL:0002623,2.08e-08,3;CL:0000154,3.52e-07,6;CL:0000771,4.39e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;1.46e-33;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.24e-14!80;UBERON:0002405!9.90e-14!115;UBERON:0002193!1.51e-12!112;UBERON:0002390!3.15e-12!102;UBERON:0003061!3.15e-12!102;UBERON:0001474!4.84e-12!86;UBERON:0004765!3.60e-10!101;UBERON:0001434!3.60e-10!101;UBERON:0002204!6.85e-10!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.13e-22,76;UBERON:0002405,7.99e-22,93;UBERON:0002193,1.75e-20,108;UBERON:0001474,1.82e-20,82;UBERON:0002390,1.01e-18,98;UBERON:0003061,1.01e-18,98;UBERON:0001434,3.91e-18,100;UBERON:0004765,5.53e-18,90;UBERON:0002204,9.17e-16,167;UBERON:0003081,3.23e-11,203;UBERON:0000926,2.05e-07,315;UBERON:0004120,2.05e-07,315;UBERON:0006603,2.05e-07,315 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0.872338524100369,0,0,0,0,0,0,0,0.247532705920093,0,0.672325146451775,1.20538905604795,1.46062018077475,2.43966399395253,0,0,0,0,0.136874425072884,0.251085279189606,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0.553995408531877,3.81034450193269,1.73608696572681,0,0.32389366601898,0,0.290796477559129,0.755751887377619,0.242584061187816,3.95129362739664,5.75635043230556,4.95530193432166,7.48000220037591,5.12321413058201,4.7296445977717,8.27389633767885,3.22742341791913,5.41705946377367,3.57660445130949,0.818718450173537,1.57306439111559,8.57034898638527,1.28371610830437,10.2293940127847,0.329851300186716,2.99195486432448,2.13112375266347,25.828622237944,6.80862269629368,11.2108004819203,6.78371396193207,4.69334626578181,2.17188844705117,16.345786571101,4.41933163185078,7.91155968602211,0.211255286311942,0.212604299965044,0,0.112328631146495,0.150176892841506,0.32145117339416,0.285012743741249,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.205601498999509,0,0,0,0,0.111410456885174,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0.50133791063589,0.434539556882471,0,3.89307896242109,0.189069634328136,0,0,0.130979075497713,0,0,0,0.174129737299267,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,2.63560834872127,19.3890132074163,0,0,0,0.132409180813219,0,0,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0.298897361103602,0.117434498643765,0,0,0,0.122834317311768,0,1.18800285728205,1.48360157567134,0,0,0,0,0,0,0,0.751190294532984,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0.193260853163297,1.09098448236334,0,0,0,0,0.10366105501537,0,0.36497735907583,1.56449532329816,0.643240938192885,0,2.3218396401599,0.721879481669586,0.118306800039844,0,0,0,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,2.53510069643662,2.94848165003288,0.590789906681404,0,0,0,0,0,0,0.0925884451585296,0,0,0,0.115930404975077,0,1.29929802984966,3.70388410061289,4.56609965363036,0,0,0.984868024349589,0.468008530278475,0.743155811443641,0,0,0,0.179117045405697,0,0.383382679165211,0,0.088048434013226,0,0,0,0.126995788584338,0,0,0,0,0,0,0,0,0,0.646358578788889,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.699810938274399,0,0.502257091432126,2.10833939483032,0,0,0,0.434343920002738,1.2328579353023,0.537182889719687,0,0,0,0.128343036279748,0,0,0.773288812777695,0,1.27587750330633,9.73709131131337,29.9161459204025,1.24324654030811,0.613457458595699,0.500170521059677,0,0.623912584592421,0.356857977594324,0.157702415033935,0.234282829985426,0,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0.862856803274467,0.426910231213777,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0.164254312027618,0,0.116210378459959,0,0.200506470303285,0.0920809889358963,0.114814448164607,0,1.04899531967539,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0.254876273045038,0,0,0,0.261435451024901,0,0,0,0.412164046590889,0,0,0,0,1.6068392984416,0.193341436584244,0,0,0.137836572484531,0.429680979473094,0.290033387828457,0.0852266274161009,0.178064071293475,0,0.192190067365106,0.127612712494584,0.2023155617111,0,0,1.3940745403212,0,0,0,0,0,0,0,0.571890581771475,0,0,0,0,0.179872457583315,0,0.235624804691373,0,0,0.842516912477962,0.48763373908959,1.94970791705028,0,0,0.565621727814851,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,2.11107635297664,1.31717957183961,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.476463550915578,0.411362273086194,0,0,1.58625035258854,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0.156679895773023,0,0,0,0.201799707191048,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0.667852230137435,0.16480387422676,0.211125408127993,0.19924798825107,0,0,0.102268682502155,0.123084805461069,0,0,0.179021174675609,0,0.197286811273867,2.3948309234694,0,0,0.0927680981618513,0,0,0,0.724999575434793,0.227586896570999,0,0,0,0,0,1.77148277162768,0.120596438625408,0,0,0.295547618953547,0,0,0,0.307801034015188,1.59518878185802,0,0,0.108647371922008,0.31900115973192,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0.182454789215666,0,0,0,0,0,1.20054501294127,0,0,0,0,0,0,0,0.138674673013139,0,0,0.0870592065804026,0.17472666824203,0,0,0,0.0821154570532092,0,0,0.451961481561065,0,0.596143835108969,0.126621591911757,0,0.0801588202515337,0,0,0,0,0,0.14405479798815,0,0.235694034616795,0.135904206073614,0,0.101998217636322,0,0,0.136905378891993,0,0,0,1.11712960508902,0.458320848023367,1.43574604915363,0,1.71690419254628,0,0.0671834724867263,0,0,0,0.164831716762333,0.0674035438541849,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.0607495566580247,0,1.41850273138557,0.0524545881349981,0,0.35857467866569,0,0.714695326373367,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0,0.439656701034247,1.32506888912221,0,0,0,0,0.427149650270779,0,0.414239055347196,0,0,0,0,0,0.2506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| ||
|short_description=p19@SOD2 | |||
}} | }} |
Latest revision as of 14:08, 16 September 2015
Short description: | p19@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_SOD2_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | -74bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.20e-45 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.20e-45 | 42 |
defensive cell | 2.89e-41 | 48 |
phagocyte | 2.89e-41 | 48 |
myeloid leukocyte | 1.29e-35 | 72 |
monopoietic cell | 2.26e-31 | 59 |
monocyte | 2.26e-31 | 59 |
monoblast | 2.26e-31 | 59 |
promonocyte | 2.26e-31 | 59 |
macrophage dendritic cell progenitor | 4.24e-30 | 61 |
myeloid lineage restricted progenitor cell | 2.99e-27 | 66 |
granulocyte monocyte progenitor cell | 9.89e-27 | 67 |
myeloid cell | 9.04e-21 | 108 |
common myeloid progenitor | 9.04e-21 | 108 |
leukocyte | 1.07e-14 | 136 |
nongranular leukocyte | 1.74e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.14e-11 | 120 |
hematopoietic oligopotent progenitor cell | 4.18e-11 | 161 |
hematopoietic multipotent progenitor cell | 4.18e-11 | 161 |
hematopoietic stem cell | 2.67e-10 | 168 |
neutrophil | 1.51e-09 | 3 |
hematopoietic cell | 2.30e-09 | 177 |
granulocyte | 3.52e-09 | 8 |
acinar cell of salivary gland | 2.08e-08 | 3 |
protein secreting cell | 3.52e-07 | 6 |
eosinophil | 4.39e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.13e-22 | 76 |
immune system | 7.99e-22 | 93 |
hemolymphoid system | 1.75e-20 | 108 |
bone element | 1.82e-20 | 82 |
hematopoietic system | 1.01e-18 | 98 |
blood island | 1.01e-18 | 98 |
skeletal system | 3.91e-18 | 100 |
skeletal element | 5.53e-18 | 90 |
musculoskeletal system | 9.17e-16 | 167 |
lateral plate mesoderm | 3.23e-11 | 203 |
mesoderm | 2.05e-07 | 315 |
mesoderm-derived structure | 2.05e-07 | 315 |
presumptive mesoderm | 2.05e-07 | 315 |