FFCP PHASE1:Hg19::chr4:77069533..77069563,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:77069533..77069563,- to FFCP PHASE1:Hg19::chr4:77069533..77069563,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=53371 | |EntrezGene=53371 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17359 | |HGNC=17359 | ||
|TSSclassifier=strong | |||
|UniProt=E7EUM5,D6RFI8,D6RBF7,D6RB65,D6RAH0,B4DT35 | |UniProt=E7EUM5,D6RFI8,D6RBF7,D6RB65,D6RAH0,B4DT35 | ||
|association_with_transcript=0bp_to_ENST00000342467,ENST00000458189,ENST00000502850,ENST00000512151,ENST00000513352,ENST00000514901,ENST00000514987_5end | |||
|cluster_id=chr4:77069533..77069563,- | |||
|description=CAGE_peak_1_at_NUP54_5end | |||
|id=chr4:77069533..77069563,- | |||
|ontology_enrichment_celltype=CL:0000037!4.05e-19!172;CL:0000566!4.05e-19!172;CL:0002032!6.99e-17!165;CL:0000837!6.99e-17!165;CL:0000988!1.07e-16!182;CL:0000542!8.55e-15!53;CL:0000051!8.55e-15!53;CL:0000838!1.05e-14!52;CL:0002031!5.27e-12!124;CL:0002087!9.87e-11!119;CL:0000738!1.56e-10!140;CL:0000084!3.17e-09!25;CL:0000827!3.17e-09!25;CL:0000134!1.82e-08!358;CL:0002320!2.88e-08!365;CL:0000219!1.29e-07!390;CL:0000791!1.39e-07!18;CL:0000789!1.39e-07!18;CL:0002420!1.39e-07!18;CL:0002419!1.39e-07!18;CL:0000790!1.39e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.94e-09;25!CL:0000542;5.76e-09;53!CL:0000791;1.32e-07;18!CL:0000789;1.32e-07;18!CL:0002419;1.32e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.15e-19,168;CL:0000988,1.03e-17,177;CL:0002032,2.15e-17,161;CL:0000837,2.15e-17,161;CL:0000542,8.55e-15,53;CL:0000051,8.55e-15,53;CL:0000838,1.05e-14,52;CL:0002031,1.69e-12,120;CL:0002087,3.39e-11,115;CL:0000738,6.31e-11,136;CL:0000084,3.17e-09,25;CL:0000827,3.17e-09,25;CL:0000134,9.70e-09,354;CL:0002320,1.56e-08,361;CL:0000219,7.37e-08,386;CL:0000791,1.39e-07,18;CL:0000789,1.39e-07,18;CL:0002420,1.39e-07,18;CL:0002419,1.39e-07,18;CL:0000790,1.39e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;5.76e-09;53!CL:0000790;1.32e-07;18 | |||
|ontology_enrichment_disease=DOID:2531!2.92e-13!51;DOID:0060083!2.92e-13!51;DOID:1240!3.94e-12!39;DOID:8692!3.30e-10!31;DOID:162!1.15e-09!235;DOID:14566!1.67e-08!239;DOID:0050686!1.06e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:8692;8.10e-10;31!DOID:1240;1.22e-09;39!DOID:2531;2.28e-08;51!DOID:0060083;2.28e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.92e-13,51;DOID:0060083,2.92e-13,51;DOID:1240,3.94e-12,39;DOID:8692,3.30e-10,31;DOID:162,1.15e-09,235;DOID:14566,1.67e-08,239;DOID:0050686,1.06e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0002384!6.33e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.37e-09,371 | |||
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| ||
|short_description=p1@NUP54 | |||
}} | }} |
Latest revision as of 17:27, 18 September 2015
Short description: | p1@NUP54 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NUP54_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000342467, ENST00000458189, ENST00000502850, ENST00000512151, ENST00000513352, ENST00000514901, ENST00000514987_5end |
EntrezGene: | NUP54 |
HGNC: | 17359 |
UniProt: | E7EUM5D6RFI8D6RBF7D6RB65D6RAH0B4DT35 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.15e-19 | 168 |
hematopoietic cell | 1.03e-17 | 177 |
hematopoietic oligopotent progenitor cell | 2.15e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.15e-17 | 161 |
lymphocyte | 8.55e-15 | 53 |
common lymphoid progenitor | 8.55e-15 | 53 |
lymphoid lineage restricted progenitor cell | 1.05e-14 | 52 |
hematopoietic lineage restricted progenitor cell | 1.69e-12 | 120 |
nongranular leukocyte | 3.39e-11 | 115 |
leukocyte | 6.31e-11 | 136 |
T cell | 3.17e-09 | 25 |
pro-T cell | 3.17e-09 | 25 |
mesenchymal cell | 9.70e-09 | 354 |
connective tissue cell | 1.56e-08 | 361 |
motile cell | 7.37e-08 | 386 |
mature alpha-beta T cell | 1.39e-07 | 18 |
alpha-beta T cell | 1.39e-07 | 18 |
immature T cell | 1.39e-07 | 18 |
mature T cell | 1.39e-07 | 18 |
immature alpha-beta T cell | 1.39e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.37e-09 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.92e-13 | 51 |
immune system cancer | 2.92e-13 | 51 |
leukemia | 3.94e-12 | 39 |
myeloid leukemia | 3.30e-10 | 31 |
cancer | 1.15e-09 | 235 |
disease of cellular proliferation | 1.67e-08 | 239 |
organ system cancer | 1.06e-07 | 137 |