FFCP PHASE1:Hg19::chr4:55096636..55096672,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:55096636..55096672,+ to FFCP PHASE1:Hg19::chr4:55096636..55096672,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5156 | |EntrezGene=5156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |HGNC=8803 | ||
|TSSclassifier=strong | |||
|UniProt=D6RG11 | |UniProt=D6RG11 | ||
|association_with_transcript=147bp_to_ENST00000504461_5end | |||
|cluster_id=chr4:55096636..55096672,+ | |||
|description=CAGE_peak_11_at_PDGFRA_5end | |||
|id=chr4:55096636..55096672,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.31e-28!180;CL:0000057!9.89e-22!75;CL:0002620!6.94e-12!23;CL:0000048!3.60e-10!430;CL:0000723!1.56e-09!436;CL:0002334!2.81e-09!12;CL:0000034!5.01e-09!444;CL:0000187!3.33e-08!54;CL:0000393!4.85e-08!60;CL:0000211!4.85e-08!60;CL:0000680!5.57e-08!57;CL:0000056!5.57e-08!57;CL:0000355!5.57e-08!57;CL:0000183!8.34e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.57e-19;23!CL:0000136;4.70e-13;13!CL:0002615;7.18e-12;3!CL:0002579;1.17e-11;3!CL:0002334;3.71e-10;12!CL:1000306;2.09e-08;4!CL:0002547;2.09e-08;4!CL:0002617;2.92e-08;2!CL:0000057;8.91e-08;73!CL:0002195;1.14e-07;2!CL:0002571;1.14e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.72e-20,76;CL:0002620,2.34e-19,23;CL:0000136,2.40e-14,15;CL:0000048,5.07e-12,427;CL:0002579,6.48e-12,3;CL:0002615,7.23e-12,3;CL:0000723,1.07e-11,433;CL:0000034,2.83e-11,441;CL:0000134,1.14e-10,354;CL:0002334,2.88e-10,12;CL:0002320,2.91e-10,361;CL:0000219,1.65e-09,386;CL:1000306,2.58e-08,4;CL:0002547,2.58e-08,4;CL:0002617,4.75e-08,2;CL:0002195,1.22e-07,2;CL:0002571,1.22e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.00e-17;5!DOID:450;2.00e-17;5!DOID:66;2.00e-17;5!DOID:423;2.00e-17;5!DOID:0080000;2.00e-17;5!DOID:11722;2.00e-17;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.01e-17,5;DOID:450,1.01e-17,5;DOID:66,1.01e-17,5;DOID:423,1.01e-17,5;DOID:0080000,1.01e-17,5;DOID:11722,1.01e-17,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.54e-09!83;UBERON:0002329!5.54e-09!83;UBERON:0003077!5.54e-09!83;UBERON:0003059!5.54e-09!83;UBERON:0007282!5.54e-09!83;UBERON:0009618!5.54e-09!83;UBERON:0007285!5.54e-09!83;UBERON:0003102!7.49e-09!95;UBERON:0000475!1.83e-08!365;UBERON:0003688!5.00e-08!6;UBERON:0002358!5.00e-08!6;UBERON:0003684!5.00e-08!6;UBERON:0001178!5.00e-08!6;UBERON:0002199!1.40e-07!45;UBERON:0002416!1.40e-07!45;UBERON:0001134!2.05e-07!61;UBERON:0002036!2.05e-07!61;UBERON:0003082!2.05e-07!61;UBERON:0002385!2.10e-07!63;UBERON:0001015!2.10e-07!63;UBERON:0000383!2.10e-07!63;UBERON:0004290!5.86e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;8.68e-22;6!UBERON:0002358;8.68e-22;6!UBERON:0003684;8.68e-22;6!UBERON:0001178;8.68e-22;6!UBERON:0004457;2.72e-14;9!UBERON:0000042;2.72e-14;9!UBERON:0002199;1.83e-10;46!UBERON:0002416;1.83e-10;46!UBERON:0002097;2.31e-09;41!UBERON:0004797;2.09e-08;4!UBERON:0000415;2.09e-08;4!UBERON:0007240;2.09e-08;4!UBERON:0005742;2.09e-08;4!UBERON:0005734;2.09e-08;4!UBERON:0004664;2.09e-08;4!UBERON:0004663;2.09e-08;4!UBERON:0005406;4.57e-08;2!UBERON:0003102;3.86e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,4.86e-22,6;UBERON:0002358,4.86e-22,6;UBERON:0003684,4.86e-22,6;UBERON:0001178,4.86e-22,6;UBERON:0002199,1.27e-13,46;UBERON:0002416,1.27e-13,46;UBERON:0002097,1.61e-11,41;UBERON:0004457,1.17e-10,12;UBERON:0000042,1.17e-10,12;UBERON:0002384,1.04e-09,371;UBERON:0000415,2.58e-08,4;UBERON:0007240,2.58e-08,4;UBERON:0005742,2.58e-08,4;UBERON:0005734,2.58e-08,4;UBERON:0004664,2.58e-08,4;UBERON:0004663,2.58e-08,4;UBERON:0005406,3.10e-08,2;UBERON:0003102,3.99e-07,99 | |||
|phase1_expression=3.08853244759946,1.07050261945492,2.81908808191942,2.00146596706261,2.23480547213644,2.61701557230111,2.53299878168311,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.547497700291537,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895037932904712,0.361439152384566,0,0.289693037921647,0.795285947051099,0,0.567208902984407,0.221729397462564,0.614843499851882,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.633152558322899,1.98613771219828,2.0078563452417,1.06400514659507,2.24271040056923,0,0,0.622422070799533,0,0.326923806226917,0.151357427644931,0,0,0,0,0.448346041655403,0,0.161872944368132,0.280901613404497,0.204154171254893,0.245668634623536,0.206651562351531,0,0.494533858557114,0,0,0.505008341862199,0.250237039743928,0.277064115484183,0.877955241761676,1.83892677479412,0.300476117813194,0.340296549480063,1.97328599257748,2.34913127700424,2.11931901159562,1.50045548042201,1.54578793857658,1.28820270022815,1.11670113798954,2.19409231913646,1.46155507741798,2.01947019395292,2.30124746605748,0.484938170456436,1.77504796258307,0.806016785821122,0.847802961552438,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.51336800074665,0.646358578788889,0,0,2.12750493267896,1.04007436911366,0.257207374262142,0,0,1.85871391755592,0.542621605391443,0,0,1.06617584622764,0,0,0,0,0,0,0,0.718874566474748,1.14861935834114,0,0.289562613335158,0,0,0,0,0,0,3.81141936333695,0,0.773288812777695,0,0,0,0,0,0.736148950314839,0,0.271265023699736,0.623912584592421,2.14114786556594,0.946214490203608,0.585707074963566,2.40756879782175,0,2.0694614258501,0,1.29058417979192,0.173767228936166,0,0,0,0,0,0,0,0,0.744323423456331,2.14846762603287,0.841980283299221,2.30650468660262,3.58195074346692,1.93024705372329,1.48418066444991,0.308419387605311,1.42049380250502,0.164254312027618,0,0.232420756919918,0.120859449591622,0,0,0.459257792658427,0.364182336013434,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,0.096670718292122,0.462145851343933,0.15350367472613,0.551346289938122,0.107420244868274,0,0.426133137080504,1.78064071293475,0,0,0,0,0,3.1481234683064,0,1.23213432070436,0,0.869932992075073,0,0.429374660225974,0.372158369359667,0.949138274156178,0.762520775695299,0,0.42793898803392,1.59101623962968,0.78494864019923,0.179872457583315,0,0.117812402345686,0.808729926293264,0,0,0.48763373908959,0.731140468893853,0,0.272999822815972,0.141405431953713,1.13008116620243,1.10273068709225,0,0.876901770507525,0,0,0,0.30982349809975,0,0.143411352204052,0.392996164052485,0,0.354761064070598,0,0.658589785919804,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.597743964753209,0,0,0,0,1.86623752597084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0.341826167541004,0,0,0,0,0.824378340616761,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0.176915129006678,0,0,0,0,0.202203398942031,0,0.468528891450678,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,9.09038104922453,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0.429765441419957,0,0.837847203816763,0.229160424011684,0,0.199679000498991,0,0,0.335917362433631,0.360299883542404,0,0,0,0,0,0,0,0.136203406111576,0,0,0.83088067605837,0,0,0.182248669974074,0,0,0.472091293214983,0,0,0,0,0,15.0018437216302,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0.320362237703084,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248385611765534,0,0,0,0,0.470531639396343,0,0,0.447764408660622,0.701139929541673,0.554805861502613,0.378806010550178,2.51567901752575,0.889811221596536,0.457680136793847,1.81477108515887,0.466311601748341,0.591420599958536,0.63718706865481,0,0,0,0.265841714557995,0,0.300515217994437,0.761610424337591,0,0.909243296012797,0.214821114084977,0,1.59238355479446,0,0.686791410365586,1.34699795506368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,1.27201740261367,0,0,2.1160556621441,0.6124909547064,0.128458450192919,0,0,0.205116364240755,0,0.276629009856872,0.161475645631851,0,0,0,0,0,0,0,2.3869946653953,0.451261970095544,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0.51215543128185,0.691259661814092,0,0,0.170426809518315,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,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| ||
|short_description=p11@PDGFRA | |||
}} | }} |
Latest revision as of 00:50, 18 September 2015
Short description: | p11@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_PDGFRA_5end |
Coexpression cluster: | NA |
Association with transcript: | 147bp_to_ENST00000504461_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | D6RG11 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.72e-20 | 76 |
skin fibroblast | 2.34e-19 | 23 |
fat cell | 2.40e-14 | 15 |
multi fate stem cell | 5.07e-12 | 427 |
omentum preadipocyte | 6.48e-12 | 3 |
adipocyte of omentum tissue | 7.23e-12 | 3 |
somatic stem cell | 1.07e-11 | 433 |
stem cell | 2.83e-11 | 441 |
mesenchymal cell | 1.14e-10 | 354 |
preadipocyte | 2.88e-10 | 12 |
connective tissue cell | 2.91e-10 | 361 |
motile cell | 1.65e-09 | 386 |
fibroblast of tunica adventitia of artery | 2.58e-08 | 4 |
fibroblast of the aortic adventitia | 2.58e-08 | 4 |
adipocyte of breast | 4.75e-08 | 2 |
hepatic stem cell | 1.22e-07 | 2 |
hepatic mesenchymal stem cell | 1.22e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
omentum | 4.86e-22 | 6 |
peritoneum | 4.86e-22 | 6 |
abdominal cavity | 4.86e-22 | 6 |
visceral peritoneum | 4.86e-22 | 6 |
integument | 1.27e-13 | 46 |
integumental system | 1.27e-13 | 46 |
skin of body | 1.61e-11 | 41 |
cavity lining | 1.17e-10 | 12 |
serous membrane | 1.17e-10 | 12 |
connective tissue | 1.04e-09 | 371 |
artery wall | 2.58e-08 | 4 |
tunica adventitia of artery | 2.58e-08 | 4 |
adventitia | 2.58e-08 | 4 |
tunica adventitia of blood vessel | 2.58e-08 | 4 |
aorta tunica adventitia | 2.58e-08 | 4 |
aorta wall | 2.58e-08 | 4 |
perirenal fat | 3.10e-08 | 2 |
surface structure | 3.99e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.01e-17 | 5 |
myotonic disease | 1.01e-17 | 5 |
muscle tissue disease | 1.01e-17 | 5 |
myopathy | 1.01e-17 | 5 |
muscular disease | 1.01e-17 | 5 |
myotonic dystrophy | 1.01e-17 | 5 |