FFCP PHASE1:Hg19::chr3:98672197..98672201,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:98672197..98672201,+ | |||
|coexpression_cluster_id=C53 | |||
|description=CAGE_peak_at_chr3:98672197..98672201,+ | |||
|id=chr3:98672197..98672201,+ | |||
|ontology_enrichment_celltype=CL:0002586!2.68e-26!3;CL:0000064!5.75e-26!3;CL:0005012!5.75e-26!3;CL:0000067!5.75e-26!3;CL:0002304!5.75e-26!3;CL:0000149!6.89e-20!4;CL:0000147!4.66e-15!14;CL:0000243!2.41e-12!15;CL:0000125!2.41e-12!15;CL:0000030!2.41e-12!15;CL:0000339!2.41e-12!15;CL:0000133!3.68e-12!59;CL:0000095!4.98e-11!17;CL:0000123!4.98e-11!17;CL:0000342!4.09e-10!1;CL:0002565!4.09e-10!1;CL:0000221!6.64e-10!71;CL:0000333!8.99e-09!41;CL:0002319!1.05e-07!25;CL:0000075!1.53e-07!27;CL:0000325!2.63e-07!39;CL:0000710!7.05e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0002586;1.91e-44;3!CL:0000342;2.58e-34;1!CL:0002565;2.58e-34;1!CL:0000149;1.17e-33;4!CL:0000147;6.67e-22;14!CL:0000243;8.39e-09;15!CL:0000125;8.39e-09;15!CL:0000095;5.63e-08;17!CL:0002149;8.72e-07;6!CL:0002255;8.72e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,2.38e-44,3;CL:0000342,2.58e-34,1;CL:0002565,2.58e-34,1;CL:0000149,1.38e-33,4;CL:0000147,7.17e-22,14;CL:0000243,8.55e-09,15;CL:0000125,8.55e-09,15;CL:0000030,8.55e-09,15;CL:0000339,8.55e-09,15;CL:0000095,5.73e-08,17;CL:0000123,5.73e-08,17;CL:0002149,8.02e-07,6;CL:0002255,8.02e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0006238;4.66e-13;10!UBERON:0003056;2.74e-12;3!CL:0000339;8.39e-09;15 | |||
|ontology_enrichment_disease=DOID:3093!1.53e-17!11 | |||
|ontology_enrichment_disease_v019=DOID:3093;4.67e-12;11!DOID:3001;8.72e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,4.80e-12,11;DOID:3001,8.02e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0007625!4.44e-48!11;UBERON:0000019!8.94e-35!19;UBERON:0000047!8.94e-35!19;UBERON:0004088!8.94e-35!19;UBERON:0003072!8.94e-35!19;UBERON:0003071!8.94e-35!19;UBERON:0004128!8.94e-35!19;UBERON:0000488!2.72e-34!4;UBERON:0000970!5.63e-33!20;UBERON:0002104!2.39e-31!21;UBERON:0001456!2.39e-31!21;UBERON:0000020!1.63e-28!23;UBERON:0000966!1.11e-27!5;UBERON:0005388!1.11e-27!5;UBERON:0001802!1.11e-27!5;UBERON:0001032!2.83e-27!24;UBERON:0004456!2.83e-27!24;UBERON:0001781!2.68e-26!3;UBERON:0001782!2.68e-26!3;UBERON:0005424!2.68e-26!3;UBERON:0001778!5.75e-26!3;UBERON:0001775!5.75e-26!3;UBERON:0002203!5.69e-23!6;UBERON:0001768!5.69e-23!6;UBERON:0005085!2.35e-22!29;UBERON:0001801!6.25e-15!14;UBERON:0001444!5.42e-13!48;UBERON:0002200!1.23e-12!11;UBERON:0006876!1.23e-12!11;UBERON:0002506!4.09e-10!1;UBERON:0001769!4.09e-10!1;UBERON:0004913!6.31e-10!1;UBERON:0003703!6.31e-10!1;UBERON:0001174!6.31e-10!1;UBERON:0004914!6.31e-10!1;UBERON:0003056!9.27e-10!61;UBERON:0000033!3.65e-09!123;UBERON:0000153!1.22e-08!129;UBERON:0007811!1.22e-08!129;UBERON:0003075!3.84e-08!86;UBERON:0007284!3.84e-08!86;UBERON:0002346!1.03e-07!90;UBERON:0004121!3.79e-07!169;UBERON:0000924!6.27e-07!173;UBERON:0006601!6.27e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.72e-59;5!UBERON:0005388;2.72e-59;5!UBERON:0001802;2.72e-59;5!UBERON:0001781;1.91e-44;3!UBERON:0001782;1.91e-44;3!UBERON:0002506;2.58e-34;1!UBERON:0001769;2.58e-34;1!UBERON:0000019;3.41e-28;19!UBERON:0000047;3.41e-28;19!UBERON:0004088;3.41e-28;19!UBERON:0010230;3.41e-28;19!UBERON:0007625;1.28e-27;11!UBERON:0000970;8.01e-27;20!UBERON:0002104;1.39e-25;21!UBERON:0001456;1.39e-25;21!UBERON:0000020;2.01e-23;23!UBERON:0001032;1.77e-22;24!UBERON:0004456;1.77e-22;24!UBERON:0001444;4.33e-11;48!UBERON:0000488;1.22e-09;4!UBERON:0010371;1.34e-09;31!UBERON:0000033;1.70e-09;50!UBERON:0007811;1.07e-07;52!UBERON:0002203;7.58e-07;6!UBERON:0001768;7.58e-07;6!UBERON:0002200;7.58e-07;6!UBERON:0000153;7.67e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.73e-49,6;UBERON:0005388,1.73e-49,6;UBERON:0001802,1.73e-49,6;UBERON:0001782,2.38e-44,3;UBERON:0005424,2.38e-44,3;UBERON:0002506,2.58e-34,1;UBERON:0001769,2.58e-34,1;UBERON:0001781,1.38e-33,4;UBERON:0007625,1.40e-27,11;UBERON:0000019,8.86e-27,20;UBERON:0000047,8.86e-27,20;UBERON:0010312,8.86e-27,20;UBERON:0004088,8.86e-27,20;UBERON:0010230,8.86e-27,20;UBERON:0003072,8.86e-27,20;UBERON:0004128,8.86e-27,20;UBERON:0003071,8.86e-27,20;UBERON:0000970,1.53e-25,21;UBERON:0002104,1.53e-25,21;UBERON:0001456,2.05e-24,22;UBERON:0000020,1.93e-22,24;UBERON:0001032,1.93e-22,24;UBERON:0004456,1.93e-22,24;UBERON:0005085,1.56e-17,31;UBERON:0001444,2.54e-11,49;UBERON:0000033,5.63e-10,56;UBERON:0000488,1.22e-09,4;UBERON:0000153,4.62e-09,62;UBERON:0007811,4.62e-09,62;UBERON:0003056,4.62e-09,61;UBERON:0003075,6.85e-07,82;UBERON:0007284,6.85e-07,82;UBERON:0002203,7.58e-07,6;UBERON:0001768,7.58e-07,6;UBERON:0002200,7.58e-07,6 | |||
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|short_description=p@chr3:98672197..98672201,+ | |||
}} | }} |
Latest revision as of 00:09, 30 July 2015
Short description: | p@chr3:98672197..98672201, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:98672197..98672201, + |
Coexpression cluster: | C53_medulloblastoma_pineal_retinoblastoma_small_retina_eye_pituitary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 2.38e-44 | 3 |
pigment cell (sensu Vertebrata) | 2.58e-34 | 1 |
iris pigment epithelial cell | 2.58e-34 | 1 |
visual pigment cell | 1.38e-33 | 4 |
pigment cell | 7.17e-22 | 14 |
glial cell (sensu Vertebrata) | 8.55e-09 | 15 |
glial cell | 8.55e-09 | 15 |
glioblast | 8.55e-09 | 15 |
glioblast (sensu Vertebrata) | 8.55e-09 | 15 |
neuron associated cell | 5.73e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.73e-08 | 17 |
epithelial cell of uterus | 8.02e-07 | 6 |
stromal cell of endometrium | 8.02e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
retina | 1.73e-49 | 6 |
photoreceptor array | 1.73e-49 | 6 |
posterior segment of eyeball | 1.73e-49 | 6 |
pigmented layer of retina | 2.38e-44 | 3 |
presumptive retinal pigmented epithelium | 2.38e-44 | 3 |
iris epithelium | 2.58e-34 | 1 |
iris | 2.58e-34 | 1 |
layer of retina | 1.38e-33 | 4 |
pigment epithelium of eye | 1.40e-27 | 11 |
camera-type eye | 8.86e-27 | 20 |
simple eye | 8.86e-27 | 20 |
immature eye | 8.86e-27 | 20 |
ocular region | 8.86e-27 | 20 |
eyeball of camera-type eye | 8.86e-27 | 20 |
optic cup | 8.86e-27 | 20 |
optic vesicle | 8.86e-27 | 20 |
eye primordium | 8.86e-27 | 20 |
eye | 1.53e-25 | 21 |
visual system | 1.53e-25 | 21 |
face | 2.05e-24 | 22 |
sense organ | 1.93e-22 | 24 |
sensory system | 1.93e-22 | 24 |
entire sense organ system | 1.93e-22 | 24 |
ectodermal placode | 1.56e-17 | 31 |
subdivision of head | 2.54e-11 | 49 |
head | 5.63e-10 | 56 |
atypical epithelium | 1.22e-09 | 4 |
anterior region of body | 4.62e-09 | 62 |
craniocervical region | 4.62e-09 | 62 |
pre-chordal neural plate | 4.62e-09 | 61 |
neural plate | 6.85e-07 | 82 |
presumptive neural plate | 6.85e-07 | 82 |
vasculature of eye | 7.58e-07 | 6 |
uvea | 7.58e-07 | 6 |
vasculature of head | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 4.80e-12 | 11 |
female reproductive endometrioid cancer | 8.02e-07 | 6 |