FFCP PHASE1:Hg19::chr3:194406603..194406619,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:194406603..194406619,+ to FFCP PHASE1:Hg19::chr3:194406603..194406619,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=131583 | |EntrezGene=131583 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26888 | |HGNC=26888 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N2R8 | |UniProt=Q8N2R8 | ||
|association_with_transcript=-2bp_to_ENST00000329759,NM_153690,uc003fuj.2_5end | |||
|cluster_id=chr3:194406603..194406619,+ | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_1_at_FAM43A_5end | |||
|id=chr3:194406603..194406619,+ | |||
|ontology_enrichment_celltype=CL:0002139!4.47e-17!24;CL:0000115!2.46e-15!35;CL:0000071!4.59e-13!18;CL:0002546!4.59e-13!18;CL:0002078!3.57e-10!44;CL:1000413!2.25e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.26e-17;24!CL:0000115;1.42e-13;36!CL:0000071;4.42e-13;18!CL:1000413;2.20e-07;9!CL:0002078;3.24e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.38e-17,24;CL:0000115,6.09e-16,36;CL:0000071,4.53e-13,18;CL:0002546,4.53e-13,18;CL:0002078,9.51e-11,45;CL:1000413,2.24e-07,9;CL:0000213,7.27e-07,58;CL:0000215,7.27e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002546;4.42e-13;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!4.92e-23!113;UBERON:0004535!8.90e-23!110;UBERON:0000055!5.75e-20!69;UBERON:0002049!3.24e-19!79;UBERON:0007798!3.24e-19!79;UBERON:0004872!1.08e-17!84;UBERON:0001981!2.03e-16!60;UBERON:0007500!2.03e-16!60;UBERON:0004537!2.03e-16!60;UBERON:0006965!2.03e-16!60;UBERON:0001986!4.59e-13!18;UBERON:0004638!4.59e-13!18;UBERON:0004852!4.59e-13!18;UBERON:0000487!4.35e-11!22;UBERON:0006914!2.97e-10!25;UBERON:0001637!3.37e-09!42;UBERON:0003509!3.37e-09!42;UBERON:0004572!3.37e-09!42;UBERON:0003914!8.18e-09!118;UBERON:0003915!2.25e-07!9;UBERON:0004700!2.25e-07!9;UBERON:0001917!2.25e-07!9;UBERON:0003081!6.01e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.42e-13;18!UBERON:0001986;4.42e-13;18!UBERON:0004852;4.42e-13;18!UBERON:0000487;4.55e-11;22!UBERON:0006914;2.79e-10;25!UBERON:0000055;3.32e-10;65!UBERON:0007500;3.58e-09;56!UBERON:0001981;3.58e-09;56!UBERON:0004537;3.58e-09;56!UBERON:0002049;6.04e-08;75!UBERON:0007798;6.04e-08;75!UBERON:0001009;1.08e-07;112!UBERON:0004535;1.13e-07;109!UBERON:0003915;2.20e-07;9!UBERON:0004700;2.20e-07;9!UBERON:0001917;2.20e-07;9!UBERON:0001637;2.65e-07;42!UBERON:0003509;2.65e-07;42!UBERON:0004572;2.65e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001009,1.44e-22,112;UBERON:0004535,2.61e-22,109;UBERON:0000055,1.76e-19,68;UBERON:0002049,9.58e-19,78;UBERON:0007798,9.58e-19,78;UBERON:0004872,3.06e-17,83;UBERON:0007500,6.02e-16,59;UBERON:0001981,6.02e-16,59;UBERON:0004537,6.02e-16,59;UBERON:0006965,6.02e-16,59;UBERON:0004638,4.53e-13,18;UBERON:0001986,4.53e-13,18;UBERON:0004852,4.53e-13,18;UBERON:0000487,4.30e-11,22;UBERON:0006914,2.93e-10,25;UBERON:0003081,1.16e-09,203;UBERON:0001637,3.34e-09,42;UBERON:0003509,3.34e-09,42;UBERON:0004572,3.34e-09,42;UBERON:0003914,6.22e-09,117;UBERON:0003915,2.24e-07,9;UBERON:0004700,2.24e-07,9;UBERON:0001917,2.24e-07,9;UBERON:0000926,6.09e-07,315;UBERON:0004120,6.09e-07,315;UBERON:0006603,6.09e-07,315;UBERON:0004111,9.55e-07,240 | |||
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| ||
|short_description=p1@FAM43A | |||
}} | }} |
Latest revision as of 13:28, 17 September 2015
Short description: | p1@FAM43A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FAM43A_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | -2bp_to_ENST00000329759, NM_153690, uc003fuj.2_5end |
EntrezGene: | FAM43A |
HGNC: | 26888 |
UniProt: | Q8N2R8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.38e-17 | 24 |
endothelial cell | 6.09e-16 | 36 |
blood vessel endothelial cell | 4.53e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.53e-13 | 18 |
meso-epithelial cell | 9.51e-11 | 45 |
endothelial cell of artery | 2.24e-07 | 9 |
lining cell | 7.27e-07 | 58 |
barrier cell | 7.27e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
circulatory system | 1.44e-22 | 112 |
cardiovascular system | 2.61e-22 | 109 |
vessel | 1.76e-19 | 68 |
vasculature | 9.58e-19 | 78 |
vascular system | 9.58e-19 | 78 |
splanchnic layer of lateral plate mesoderm | 3.06e-17 | 83 |
epithelial tube open at both ends | 6.02e-16 | 59 |
blood vessel | 6.02e-16 | 59 |
blood vasculature | 6.02e-16 | 59 |
vascular cord | 6.02e-16 | 59 |
blood vessel endothelium | 4.53e-13 | 18 |
endothelium | 4.53e-13 | 18 |
cardiovascular system endothelium | 4.53e-13 | 18 |
simple squamous epithelium | 4.30e-11 | 22 |
squamous epithelium | 2.93e-10 | 25 |
lateral plate mesoderm | 1.16e-09 | 203 |
artery | 3.34e-09 | 42 |
arterial blood vessel | 3.34e-09 | 42 |
arterial system | 3.34e-09 | 42 |
epithelial tube | 6.22e-09 | 117 |
endothelial tube | 2.24e-07 | 9 |
arterial system endothelium | 2.24e-07 | 9 |
endothelium of artery | 2.24e-07 | 9 |
mesoderm | 6.09e-07 | 315 |
mesoderm-derived structure | 6.09e-07 | 315 |
presumptive mesoderm | 6.09e-07 | 315 |
anatomical conduit | 9.55e-07 | 240 |