FFCP PHASE1:Hg19::chr3:171528307..171528316,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:171528307..171528316,- to FFCP PHASE1:Hg19::chr3:171528307..171528316,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5337 | |EntrezGene=5337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9067 | |HGNC=9067 | ||
|TSSclassifier=strong | |||
|UniProt=Q13393,Q59EA4 | |UniProt=Q13393,Q59EA4 | ||
|association_with_transcript=-23bp_to_ENST00000351298,NM_001130081,NM_002662_5end | |||
|cluster_id=chr3:171528307..171528316,- | |||
|description=CAGE_peak_3_at_PLD1_5end | |||
|id=chr3:171528307..171528316,- | |||
|ontology_enrichment_celltype=CL:0000839!3.19e-09!70;CL:0000557!2.24e-08!71;CL:0002139!7.35e-08!24;CL:0000115!1.34e-07!35;CL:0000766!2.38e-07!76;CL:0002194!2.76e-07!63;CL:0000576!2.76e-07!63;CL:0000040!2.76e-07!63;CL:0000559!2.76e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.21e-18;24!CL:0002618;2.74e-16;3!CL:0000115;1.14e-14;36!CL:0002138;3.66e-13;6!CL:0000473;1.53e-10;39!CL:0000234;1.53e-10;39!CL:0000860;2.80e-10;33!CL:0002057;2.80e-10;33!CL:0000071;2.04e-09;18!CL:0000097;3.80e-09;5!CL:0002078;1.81e-08;45!CL:0002543;2.28e-08;6!CL:0002544;1.07e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.18e-18,24;CL:0000115,3.07e-17,36;CL:0002618,2.55e-16,3;CL:0000839,1.70e-13,66;CL:0005020,2.46e-13,6;CL:0002138,2.46e-13,6;CL:0005022,2.46e-13,6;CL:0002078,2.66e-13,45;CL:0000557,2.99e-13,67;CL:0000766,4.05e-12,72;CL:0002031,6.88e-12,120;CL:0000473,1.18e-10,48;CL:0000234,1.18e-10,48;CL:0000738,5.50e-10,136;CL:0002032,6.52e-10,161;CL:0000837,6.52e-10,161;CL:0000213,8.79e-10,58;CL:0000215,8.79e-10,58;CL:0002194,1.13e-09,59;CL:0000576,1.13e-09,59;CL:0000040,1.13e-09,59;CL:0000559,1.13e-09,59;CL:0000763,1.73e-09,108;CL:0000049,1.73e-09,108;CL:0000071,2.42e-09,18;CL:0002546,2.42e-09,18;CL:0000037,2.65e-09,168;CL:0000097,2.74e-09,5;CL:0002028,2.74e-09,5;CL:0002009,2.78e-09,61;CL:0002087,1.16e-08,115;CL:0000988,1.36e-08,177;CL:0002543,2.20e-08,6;CL:0000860,2.50e-08,42;CL:0002057,2.50e-08,42;CL:0002544,1.44e-07,6 | |||
|ontology_enrichment_development_v019=CL:0005022;3.66e-13;6!CL:0002546;2.04e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!2.34e-08!115;UBERON:0000467!4.29e-08!625;UBERON:0000480!5.85e-08!626;UBERON:0000468!5.32e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002066;5.84e-10;5!UBERON:0001473;6.67e-10;8!UBERON:0004536;6.67e-10;8!UBERON:0006558;6.67e-10;8!UBERON:0004638;2.04e-09;18!UBERON:0001986;2.04e-09;18!UBERON:0004852;2.04e-09;18!UBERON:0002465;6.13e-08;10!UBERON:0000487;1.36e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,8.63e-15,93;UBERON:0002193,3.60e-12,108;UBERON:0002371,2.54e-11,76;UBERON:0001474,2.86e-10,82;UBERON:0001473,4.97e-10,8;UBERON:0004536,4.97e-10,8;UBERON:0006558,4.97e-10,8;UBERON:0002066,5.59e-10,5;UBERON:0004638,2.42e-09,18;UBERON:0001986,2.42e-09,18;UBERON:0004852,2.42e-09,18;UBERON:0004765,4.34e-09,90;UBERON:0003081,1.11e-08,203;UBERON:0002390,4.21e-08,98;UBERON:0003061,4.21e-08,98;UBERON:0002465,4.86e-08,10;UBERON:0001434,7.02e-08,100;UBERON:0000487,1.56e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0.37129905888014,0,0,0.602694528023977,0,0,0,0,0,0,0.136874425072884,0,2.21598876669059,1.64201178899891,1.65292640758726,0,0.383829398097213,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0,0.895661896959697,0.32389366601898,0.257575567634187,0.436194716338694,0,0,0.232429036905685,0.411167888021826,0.619412741790207,0.863077176966451,0.512321413058201,0,4.48169384957604,1.29096936716765,0,0.376484679085209,1.09162460023138,0,2.75475503133812,3.20929027076094,0.639337125799041,0.329851300186716,0.398927315243264,0,3.19230162491442,5.6738522469114,0.622822248995575,0.251248665256743,0.521482918420201,0,2.42159801053347,4.41933163185078,0.949387162322653,0,0.212604299965044,0.209658645508376,0.561643155732475,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0,0,0.144846518960824,0,0,0.472674085820339,0,0,0.130979075497713,0.364295288292542,0.370784442784429,1.29818957461873,0.174129737299267,0.398873881556595,0,0,0,1.19257444420023,0,1.04142150482278,0,0.838998872419812,0.825354125820202,0.417989933073621,0.516833518338658,1.77883131343355,2.00832367658802,0.805658634218294,0,0.976248230192678,1.47065232138347,0,5.00078478390847,2.69435247151404,2.25222960966644,0,0,0.732806975721629,0,0,0.436094052142534,0.496971951695318,0.12663051166458,0.132409180813219,0,0,0,0,0.49333509683432,0.622422070799533,0.808264032418128,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0.161872944368132,0,0,0.245668634623536,0.309977343527296,0,0.741800787835671,0,0,0,0,0,0,0,0.600952235626387,0.340296549480063,0.179389635688862,0.213557388818567,0,0,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.0974370051611986,0.504867548488229,0.368199594569197,0,0,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,1.4763109092493,0,0,0,0,0,0.590789906681404,0,0,0.343135620597051,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,1.29929802984966,1.85194205030644,0.761016608938393,0,0,2.95460407304877,0.468008530278475,0.743155811443641,0,0.16798212819886,0,0.179117045405697,0,0.383382679165211,1.97065295158377,0.704387472105808,1.4512968087854,1.29707958075265,0.6312121671319,0.380987365753014,0,0,0,0.411309970813294,0.600686115687835,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0.256686072559497,0,0,0,0.167516265334349,0,0,0,0,0.613457458595699,0,0,0,0,0,0,0,0,0,0,0,0.260650843404249,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0.164254312027618,0,0.116210378459959,0.120859449591622,0,0.184161977871793,0.114814448164607,0,0.262248829918848,0,0.0770153371044148,0,0,0.211103257785751,2.27466768141793,0.510281115829547,0.647747748306418,0,0,0,0,0,0,0.219259876645935,0,0,0,0.325378394664303,0.309123034943167,0.183138929636687,0.330037999682352,0,0,0,0.193341436584244,0.154048617114644,0.15350367472613,0.137836572484531,0.214840489736547,0.145016693914229,0,0.0890320356467374,0,0.192190067365106,0.510450849978337,0.2023155617111,0,0,0.6970372701606,0,0.532306030317022,0.869932992075073,0.37064843820784,0.858749320451947,0,0,0,0,0,0.318203247925937,0,0.179872457583315,0.54907405947211,0.471249609382746,0.202182481573316,0,0.421258456238981,0,0.487426979262569,0,0.136499911407986,0.424216295861138,0,0,0,0,0,0,0.405820753925408,0.6196469961995,0,0.143411352204052,0.491245205065606,0.7133421029625,0.709522128141196,0.422215270595328,0.658589785919804,0,0,0.192444225451024,0,0,0.282431402330337,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0.383010740264733,0,2.27235358192189,0.561594356226918,0,0.156679895773023,2.50634477090067,0,0.1605880751037,0.201799707191048,0.425846237690326,0.343505344755765,0,0,0.166849141711909,0,0,0,0,0,0,0,0.293016358543788,0.121360521749513,0,0,0,0.296964680832639,0.921482106297696,0,0,0.445234820091624,0.659215496907038,0,0.398495976502139,0.276283915531148,0,0,2.21552649829925,0.311039587661807,0,0.537063524026827,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0.724999575434793,0,0,0.472775363535873,0,0,0,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0,0.10893846351899,1.11538995422883,0.0769502585037971,0.455768223388005,2.07507513949254,0.448788222048861,0.651884231532048,0.957003479195758,0.0915975934018623,0.533034776018635,0,0.31396051279005,0.166211681900156,0.902382642468723,0.588187602953219,0.671286347903371,0.189753732724185,0.476809736941136,1.05499032264014,0.163232808159148,0.141353071433941,0.216388639742091,0,0.265372693510018,0,0.296521128680622,0.123563938946503,0.313265848516366,0.808813595768125,0,0.468528891450678,0,0.19566461893209,0,0.394584402849391,0,0.30607276163049,0.063186579628488,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| ||
|short_description=p3@PLD1 | |||
}} | }} |
Latest revision as of 17:36, 16 September 2015
Short description: | p3@PLD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -23bp_to_ENST00000351298, NM_001130081, NM_002662_5end |
EntrezGene: | PLD1 |
HGNC: | 9067 |
UniProt: | Q13393Q59EA4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immune system | 8.63e-15 | 93 |
hemolymphoid system | 3.60e-12 | 108 |
bone marrow | 2.54e-11 | 76 |
bone element | 2.86e-10 | 82 |
lymphatic vessel | 4.97e-10 | 8 |
lymph vasculature | 4.97e-10 | 8 |
lymphatic part of lymphoid system | 4.97e-10 | 8 |
umbilical vein | 5.59e-10 | 5 |
blood vessel endothelium | 2.42e-09 | 18 |
endothelium | 2.42e-09 | 18 |
cardiovascular system endothelium | 2.42e-09 | 18 |
skeletal element | 4.34e-09 | 90 |
lateral plate mesoderm | 1.11e-08 | 203 |
hematopoietic system | 4.21e-08 | 98 |
blood island | 4.21e-08 | 98 |
lymphoid system | 4.86e-08 | 10 |
skeletal system | 7.02e-08 | 100 |
simple squamous epithelium | 1.56e-07 | 22 |