FFCP PHASE1:Hg19::chr3:107809701..107809705,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:107809701..107809705,+ to FFCP PHASE1:Hg19::chr3:107809701..107809705,+: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:107809701..107809705,+ | |||
|description=CAGE_peak_at_chr3:107809701..107809705,+ | |||
|id=chr3:107809701..107809705,+ | |||
|ontology_enrichment_celltype=CL:0002087!1.63e-16!119;CL:0000037!4.94e-15!172;CL:0000566!4.94e-15!172;CL:0000738!1.18e-14!140;CL:0002031!2.33e-14!124;CL:0000988!3.72e-14!182;CL:0002032!5.53e-13!165;CL:0000837!5.53e-13!165;CL:0002057!1.60e-10!42;CL:0000860!1.73e-09!45;CL:0000839!4.12e-08!70;CL:0002194!6.44e-08!63;CL:0000576!6.44e-08!63;CL:0000040!6.44e-08!63;CL:0000559!6.44e-08!63;CL:0000557!6.47e-08!71;CL:0000624!1.53e-07!6;CL:0002009!1.64e-07!65;CL:0000838!1.81e-07!52;CL:0000542!3.05e-07!53;CL:0000051!3.05e-07!53;CL:0000766!5.07e-07!76;CL:0000763!8.77e-07!112;CL:0000049!8.77e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0002591;1.81e-40;1!CL:0002149;5.54e-08;6!CL:0002255;5.54e-08;6!CL:0000235;6.55e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,3.30e-40,1;CL:0002149,5.54e-08,6;CL:0002255,5.54e-08,6;CL:0000235,6.78e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3001;5.54e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,5.54e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001893!9.93e-15!34;UBERON:0001869!2.10e-14!32;UBERON:0002791!1.16e-13!33;UBERON:0002020!3.26e-13!34;UBERON:0003528!3.26e-13!34;UBERON:0002780!7.08e-13!41;UBERON:0001890!7.08e-13!41;UBERON:0006240!7.08e-13!41;UBERON:0001950!1.40e-12!20;UBERON:0003080!1.92e-12!42;UBERON:0001049!1.13e-11!57;UBERON:0005068!1.13e-11!57;UBERON:0006241!1.13e-11!57;UBERON:0007135!1.13e-11!57;UBERON:0002619!3.52e-11!22;UBERON:0002616!4.62e-11!59;UBERON:0000955!4.14e-10!69;UBERON:0006238!4.14e-10!69;UBERON:0000956!1.71e-09!25;UBERON:0000203!1.71e-09!25;UBERON:0002390!2.29e-09!102;UBERON:0003061!2.29e-09!102;UBERON:0000369!9.64e-09!4;UBERON:0002435!9.64e-09!4;UBERON:0000204!9.64e-09!4;UBERON:0010082!9.64e-09!4;UBERON:0003056!1.08e-08!61;UBERON:0003075!1.20e-08!86;UBERON:0007284!1.20e-08!86;UBERON:0002193!1.93e-08!112;UBERON:0005743!2.10e-08!86;UBERON:0001017!2.59e-08!82;UBERON:0002346!5.89e-08!90;UBERON:0002420!8.08e-08!9;UBERON:0007245!8.08e-08!9;UBERON:0010009!8.08e-08!9;UBERON:0010011!8.08e-08!9;UBERON:0000454!8.08e-08!9;UBERON:0000153!1.02e-07!129;UBERON:0007811!1.02e-07!129;UBERON:0000073!1.08e-07!94;UBERON:0001016!1.08e-07!94;UBERON:0000033!3.41e-07!123;UBERON:0007023!3.45e-07!115;UBERON:0002371!3.82e-07!80;UBERON:0005383!5.21e-07!3;UBERON:0005382!5.21e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000078;5.15e-21;2!UBERON:0002012;5.15e-21;2!UBERON:0008886;5.15e-21;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,6.96e-21,2;UBERON:0007497,6.96e-21,2;UBERON:0003643,6.96e-21,2;UBERON:0003504,6.96e-21,2;UBERON:0003469,6.96e-21,2;UBERON:0003496,6.96e-21,2;UBERON:0002012,6.96e-21,2;UBERON:0008886,6.96e-21,2;UBERON:0007303,6.96e-21,2;UBERON:0002061,6.96e-21,2;UBERON:0005432,6.96e-21,2;UBERON:0004363,6.96e-21,2;UBERON:0004145,2.09e-14,3;UBERON:0003498,3.49e-09,5;UBERON:0005985,3.49e-09,5;UBERON:0010188,7.25e-08,6;UBERON:0002539,7.25e-08,6;UBERON:0003351,7.25e-08,6;UBERON:0008816,7.25e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0.0774672005803016,0,0.293600439334847,0.553995408531877,0,0.434021741431704,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0.863077176966451,1.2808035326455,0.47296445977717,0,0,0,0,0.272906150057846,0.224723484445085,0.306083892370903,0.320929027076094,0.639337125799041,0,0.598390972864896,0,0,0,0,0.251248665256743,0.521482918420201,0.65156653411535,0,0.736555271975129,0.949387162322653,0,0.637812899895131,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0,0,0.954053754535364,0,0,0.382273228125229,0,0,0,0.196709770113833,0.393010762749165,0.205601498999509,0,0.32592226663359,0.473447805734733,0,0.111410456885174,0,0,0.270803863765016,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0.649094787309367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0.197030760201927,0.431255149719035,0.256686072559497,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0.211673582723883,0,0,0,0.313359791546046,0,0,0,0,0,0,0,0,0,0,0.278406173895242,1.23087398947712,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0.211125408127993,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.185536196323703,0,0.520855522170466,0,0,0,0,0,0,0,0,0.885741385813839,0.482385754501632,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0.17472666824203,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0.372757606696298,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500763722825999,0,0,0.124192805882767,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0.132864840313363,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0.513833800771676,0,0.478901577171454,0.615349092722265,0,0.345786262321089,0.322951291263702,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.19024743058172,0,0,0,0,0.127762427639595,0,0,0,0,0,0.345701962667338,0,0.0679697329768317,0.197318320688547,0,0,0,0.628462359664008,0,0,0,0,0.214429632529969,0,0.116241425368125,0,0,0,0,0,0,0,0,0,2.97838929107265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0.0999411559249289,0,0,0,0,0.458729283404541,0,0,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517164979309476,0,0,0,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0,0.0774672005803016,0,0.293600439334847,0.553995408531877,0,0.434021741431704,0,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0.863077176966451,1.2808035326455,0.47296445977717,0,0,0,0,0.272906150057846,0.224723484445085,0.306083892370903,0.320929027076094,0.639337125799041,0,0.598390972864896,0,0,0,0,0.251248665256743,0.521482918420201,0.65156653411535,0,0.736555271975129,0.949387162322653,0,0.637812899895131,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0,0,0.954053754535364,0,0,0.382273228125229,0,0,0,0.196709770113833,0.393010762749165,0.205601498999509,0,0.32592226663359,0.473447805734733,0,0.111410456885174,0,0,0.270803863765016,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0.649094787309367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0.197030760201927,0.431255149719035,0.256686072559497,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510450849978337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0.211673582723883,0,0,0,0.313359791546046,0,0,0,0,0,0,0,0,0,0,0.278406173895242,1.23087398947712,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0.211125408127993,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.185536196323703,0,0.520855522170466,0,0,0,0,0,0,0,0,0.885741385813839,0.482385754501632,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0.17472666824203,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0,0,0,0,0.372757606696298,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164185041498678,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500763722825999,0,0,0.124192805882767,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553033744606923,0,0.132864840313363,0,0,0,0,0.39997479170986,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0.513833800771676,0,0.478901577171454,0.615349092722265,0,0.345786262321089,0.322951291263702,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.202612753855184,0,0.206686796501184,0.19024743058172,0,0,0,0,0.127762427639595,0,0,0,0,0,0.345701962667338,0,0.0679697329768317,0.197318320688547,0,0,0,0.628462359664008,0,0,0,0,0.214429632529969,0,0.116241425368125,0,0,0,0,0,0,0,0,0,2.97838929107265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0.0999411559249289,0,0,0,0,0.458729283404541,0,0,0.339957450954573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517164979309476,0,0,0,0.124149428591716,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:107809701..107809705,+ | |||
}} | }} |
Latest revision as of 14:03, 29 July 2015
Short description: | p@chr3:107809701..107809705, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:107809701..107809705, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 3.30e-40 | 1 |
epithelial cell of uterus | 5.54e-08 | 6 |
stromal cell of endometrium | 5.54e-08 | 6 |
macrophage | 6.78e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 6.96e-21 | 2 |
developing epithelial placode | 6.96e-21 | 2 |
respiratory system arterial blood vessel | 6.96e-21 | 2 |
respiratory system blood vessel | 6.96e-21 | 2 |
respiratory system artery | 6.96e-21 | 2 |
head blood vessel | 6.96e-21 | 2 |
pulmonary artery | 6.96e-21 | 2 |
pulmonary vascular system | 6.96e-21 | 2 |
pharyngeal vasculature | 6.96e-21 | 2 |
truncus arteriosus | 6.96e-21 | 2 |
aortic sac | 6.96e-21 | 2 |
pharyngeal arch artery | 6.96e-21 | 2 |
outflow tract | 2.09e-14 | 3 |
heart blood vessel | 3.49e-09 | 5 |
coronary vessel | 3.49e-09 | 5 |
protuberance | 7.25e-08 | 6 |
pharyngeal arch | 7.25e-08 | 6 |
pharyngeal epithelium | 7.25e-08 | 6 |
embryonic head | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 5.54e-08 | 6 |