FFCP PHASE1:Hg19::chr2:216257770..216257790,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:216257770..216257790,- to FFCP PHASE1:Hg19::chr2:216257770..216257790,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2335 | |EntrezGene=2335 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |HGNC=3778 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=135bp_to_uc010zjp.1_5end | |||
|cluster_id=chr2:216257770..216257790,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_60_at_FN1_5end | |||
|id=chr2:216257770..216257790,- | |||
|ontology_enrichment_celltype=CL:0000055!6.60e-32!180;CL:0000057!5.95e-21!75;CL:0000183!6.22e-14!59;CL:0000680!8.75e-14!57;CL:0000056!8.75e-14!57;CL:0000355!8.75e-14!57;CL:0002371!5.40e-13!591;CL:0000187!7.11e-13!54;CL:0000144!6.98e-12!625;CL:0000393!8.72e-11!60;CL:0000211!8.72e-11!60;CL:0000048!2.18e-10!430;CL:0000034!4.01e-10!444;CL:0000723!6.59e-10!436;CL:0002620!2.28e-08!23;CL:0002494!3.35e-08!16;CL:0000548!4.43e-08!679;CL:0000004!4.43e-08!679;CL:0000255!4.43e-08!679;CL:0000012!9.47e-08!682;CL:0000192!1.64e-07!42;CL:0000514!1.64e-07!42;CL:0000359!5.84e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002494;1.29e-08;16!CL:0000188;8.06e-08;9!CL:0000594;1.51e-07;3!CL:0000187;2.29e-07;55!CL:0000346;4.58e-07;3!CL:1000428;4.58e-07;3!CL:0000632;4.58e-07;3!CL:0002620;5.57e-07;23!CL:0000746;7.06e-07;3!CL:0000723;8.99e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.40e-11,76;CL:0000187,9.65e-11,55;CL:0000680,6.60e-10,58;CL:0000056,6.60e-10,58;CL:0000355,6.60e-10,58;CL:0000048,9.38e-10,427;CL:0000723,2.30e-09,433;CL:0000393,3.70e-09,61;CL:0000211,3.70e-09,61;CL:0000034,7.27e-09,441;CL:0002494,9.44e-09,16;CL:0000188,9.83e-08,9;CL:0000594,1.72e-07,3;CL:0000632,2.81e-07,3;CL:0000346,4.64e-07,3;CL:1000428,4.64e-07,3;CL:0002620,5.45e-07,23;CL:0000746,7.91e-07,3;CL:0000513,7.91e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000513;7.06e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;9.08e-07;5!DOID:450;9.08e-07;5!DOID:66;9.08e-07;5!DOID:423;9.08e-07;5!DOID:0080000;9.08e-07;5!DOID:11722;9.08e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,6.29e-07,5;DOID:450,6.29e-07,5;DOID:66,6.29e-07,5;DOID:423,6.29e-07,5;DOID:0080000,6.29e-07,5;DOID:11722,6.29e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.70e-18!83;UBERON:0002329!5.70e-18!83;UBERON:0003077!5.70e-18!83;UBERON:0003059!5.70e-18!83;UBERON:0007282!5.70e-18!83;UBERON:0009618!5.70e-18!83;UBERON:0007285!5.70e-18!83;UBERON:0005256!1.51e-16!143;UBERON:0004290!1.57e-15!70;UBERON:0000486!1.78e-13!82;UBERON:0001134!6.48e-12!61;UBERON:0002036!6.48e-12!61;UBERON:0003082!6.48e-12!61;UBERON:0002385!4.37e-11!63;UBERON:0001015!4.37e-11!63;UBERON:0000383!4.37e-11!63;UBERON:0004872!1.67e-08!84;UBERON:0002100!9.52e-08!216;UBERON:0003914!2.96e-07!118;UBERON:0000490!5.02e-07!138;UBERON:0005631!7.71e-07!14;UBERON:0000158!7.71e-07!14;UBERON:0002199!8.49e-07!45;UBERON:0002416!8.49e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;4.58e-07;3!UBERON:0001992;4.58e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.93e-13,73;UBERON:0007503,1.14e-12,78;UBERON:0002329,1.97e-12,71;UBERON:0003059,1.97e-12,71;UBERON:0007282,1.97e-12,71;UBERON:0004290,1.97e-12,71;UBERON:0009618,1.97e-12,71;UBERON:0003077,3.67e-12,72;UBERON:0007285,3.67e-12,72;UBERON:0000486,1.39e-10,83;UBERON:0005256,6.38e-10,122;UBERON:0001134,6.31e-09,62;UBERON:0002036,6.31e-09,62;UBERON:0003082,6.31e-09,62;UBERON:0003104,1.23e-08,160;UBERON:0009142,1.23e-08,160;UBERON:0002385,1.74e-08,64;UBERON:0001015,1.74e-08,64;UBERON:0000383,1.74e-08,64;UBERON:0002199,1.87e-07,46;UBERON:0002416,1.87e-07,46;UBERON:0000412,4.64e-07,3;UBERON:0001992,4.64e-07,3;UBERON:0000490,5.31e-07,148 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,1.0007329835313,0,1.74467704820074,0,0.631719873426831,0,0,0.697801167972428,1.96597234917155,2.90143676051299,0.990130823680373,2.98257638155124,0.672325146451775,1.20538905604795,2.92124036154949,1.46379839637152,0.123121058076788,0.204000691244253,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,1.34140171940727,1.2786256184353,1.0843174571537,0,0.434539556882471,5.5670016293577,14.1124112387764,0.0945348171640679,0.886917589850256,0.87834785693126,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0,0,0,0,0,0,0,0,0,1.49091585508596,0.886413581652058,0.794455084879313,5.16305917347865,0.709336764396714,0.560677600142307,2.1349799145941,1.48000529050296,1.55605517699883,0.808264032418128,1.47115712802113,1.96764655938411,7.49028701823999,0.468642863667593,3.1216007683032,0,2.24173020827702,0.469737994575059,0.809364721840658,0.280901613404497,0.408308342509787,1.35117749042945,0.206651562351531,0,0.741800787835671,0.910161361938026,0,0.505008341862199,0.875829639103749,0,0.877955241761676,0.30648779579902,0.45071417671979,0.453728732640084,2.87023417102179,1.49490172172997,2.33125091275518,1.50045548042201,0,1.28820270022815,0,1.35021065793013,0.389748020644795,1.26216887122057,0.460249493211497,0.323292113637624,3.19508633264953,0.503760491138201,0.508681776931463,0,0,0,0.121973706129595,0,0.464775771478074,0.414644220061482,0.252320850875628,0,3.12899064659632,2.57296375277154,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,2.94017422771084,0,0,0,0,0.245976877086227,0.514703430895577,0.219500570817251,0,0,0,0.325808305310325,0,1.44331342025273,0,3.63966952131047,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0.626909658919938,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.336393253036082,0,0.36669142910475,0,3.57656445851882,1.690605505112,0.26593811658487,0,0.514414748524284,0,1.0656887160644,0.428933980974443,1.08524321078289,0,0,0,0,0.301439377059586,0.871533458600294,0.199945982364114,0,0,0,0.958499421966331,0,0,0.289562613335158,0.410952645100767,0.537182889719687,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.858840442033979,3.00102312635806,1.35632511849868,3.74347550755453,4.81758269752337,1.26161932027148,0.937131319941706,0.902838299183157,0,2.0694614258501,1.99267679560631,3.87175253937577,0.434418072340414,0.195801157462741,1.02943027143257,0,0,0,0.606255142892519,0,4.23346410661552,0.744323423456331,0.306923946576125,1.12264037773229,0.128139149255701,0.511707249066704,0.965123526861645,0,1.07946785661859,1.24293207719189,0.492762936082855,1.03850885836724,0.464841513839837,0.483437798366489,1.60405176242628,0,0.34444334449382,0.910455840033585,0.524497659837696,0,0.0770153371044148,0,0,0.211103257785751,0,0,1.0795795805107,0,0.541892875087706,1.00337954770971,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,1.6068392984416,1.54673149267395,0.462145851343933,1.22802939780904,0.551346289938122,3.11518710117994,3.62541734785571,2.30111894023472,1.15741646340759,0,0,0.127612712494584,0.2023155617111,0,3.77774816196768,0,0.924100740528266,0,0,0.37064843820784,0,0.744316738719335,0.949138274156178,0.571890581771475,0,2.99557291623744,0.95460974377781,1.56989728039846,0,0,1.17812402345686,0,1.58510321173008,0,1.46290121726877,0.243713489631284,0,0.136499911407986,0.141405431953713,3.39024349860728,1.10273068709225,0,0.438450885253763,0.578775534266688,1.9676842561399,0.811641507850816,0.30982349809975,0.281695602532241,0.286822704408103,0.687743287091848,0.35667105148125,0,0.211107635297664,1.31717957183961,0,0.349934720244983,0,0.670302275535787,0,0,0.86101074534246,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.67121139316383,0.296964680832639,0.921482106297696,0,0,5.34281784109948,0,0,0.19924798825107,0,0,0.20453736500431,0,7.46495010388338,0,0,0,0.197286811273867,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,15.3120556671321,0.641183153813036,55.435616705938,0,0,0,0,0,0,0,0,0.210998064528027,0,0.565412285735763,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,1.20990716048664,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0.451961481561065,0.274083849293502,0,0,0,0,0,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0,0.577901179803038,0,0,0,0.429765441419957,0,0,0.687481272035051,0,0,0,0,0,3.24269895188163,0,0.0787831823072236,0.329663433524666,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.157363764404994,0,0.179287339332845,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,1.70388021785422,0.1133120915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| ||
|short_description=p60@FN1 | |||
}} | }} |
Latest revision as of 03:07, 20 September 2015
Short description: | p60@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_60_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 135bp_to_uc010zjp.1_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.40e-11 | 76 |
muscle cell | 9.65e-11 | 55 |
muscle precursor cell | 6.60e-10 | 58 |
myoblast | 6.60e-10 | 58 |
multi-potent skeletal muscle stem cell | 6.60e-10 | 58 |
multi fate stem cell | 9.38e-10 | 427 |
somatic stem cell | 2.30e-09 | 433 |
electrically responsive cell | 3.70e-09 | 61 |
electrically active cell | 3.70e-09 | 61 |
stem cell | 7.27e-09 | 441 |
cardiocyte | 9.44e-09 | 16 |
cell of skeletal muscle | 9.83e-08 | 9 |
skeletal muscle satellite cell | 1.72e-07 | 3 |
hepatic stellate cell | 2.81e-07 | 3 |
hair follicle dermal papilla cell | 4.64e-07 | 3 |
stem cell of epidermis | 4.64e-07 | 3 |
skin fibroblast | 5.45e-07 | 23 |
cardiac muscle cell | 7.91e-07 | 3 |
cardiac muscle myoblast | 7.91e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 5.93e-13 | 73 |
epithelial vesicle | 1.14e-12 | 78 |
somite | 1.97e-12 | 71 |
presomitic mesoderm | 1.97e-12 | 71 |
presumptive segmental plate | 1.97e-12 | 71 |
dermomyotome | 1.97e-12 | 71 |
trunk paraxial mesoderm | 1.97e-12 | 71 |
paraxial mesoderm | 3.67e-12 | 72 |
presumptive paraxial mesoderm | 3.67e-12 | 72 |
multilaminar epithelium | 1.39e-10 | 83 |
trunk mesenchyme | 6.38e-10 | 122 |
skeletal muscle tissue | 6.31e-09 | 62 |
striated muscle tissue | 6.31e-09 | 62 |
myotome | 6.31e-09 | 62 |
mesenchyme | 1.23e-08 | 160 |
entire embryonic mesenchyme | 1.23e-08 | 160 |
muscle tissue | 1.74e-08 | 64 |
musculature | 1.74e-08 | 64 |
musculature of body | 1.74e-08 | 64 |
integument | 1.87e-07 | 46 |
integumental system | 1.87e-07 | 46 |
dermal papilla | 4.64e-07 | 3 |
papillary layer of dermis | 4.64e-07 | 3 |
unilaminar epithelium | 5.31e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 6.29e-07 | 5 |
myotonic disease | 6.29e-07 | 5 |
muscle tissue disease | 6.29e-07 | 5 |
myopathy | 6.29e-07 | 5 |
muscular disease | 6.29e-07 | 5 |
myotonic dystrophy | 6.29e-07 | 5 |