FFCP PHASE1:Hg19::chr2:149894968..149894986,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:149894968..149894986,+ to FFCP PHASE1:Hg19::chr2:149894968..149894986,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=130576 | |EntrezGene=130576 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27018 | |HGNC=27018 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NI32 | |UniProt=Q8NI32 | ||
|association_with_transcript=0bp_to_ENST00000409642,NM_177964,uc002twv.1,uc002tww.1_5end | |||
|cluster_id=chr2:149894968..149894986,+ | |||
|coexpression_cluster_id=C2660 | |||
|description=CAGE_peak_5_at_LYPD6B_5end | |||
|id=chr2:149894968..149894986,+ | |||
|ontology_enrichment_celltype=CL:0000075!1.36e-07!27;CL:0000710!5.46e-07!20 | |||
|ontology_enrichment_celltype_v019=CL:0000197;3.19e-14;6!CL:0000098;3.19e-14;6!CL:0002167;3.19e-14;6!CL:0000075;9.56e-14;27!CL:0000710;1.57e-11;20!CL:0002586;5.34e-08;3!CL:0000064;2.19e-07;3!CL:0000067;2.19e-07;3!CL:0005012;2.19e-07;3!CL:0002304;2.19e-07;3!CL:0000346;2.19e-07;3!CL:1000428;2.19e-07;3!CL:0000222;8.80e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000197,2.99e-14,6;CL:0000098,2.99e-14,6;CL:0002167,2.99e-14,6;CL:0000075,9.43e-14,27;CL:0000710,1.60e-11,20;CL:0002586,4.82e-08,3;CL:0000133,7.26e-08,59;CL:0000346,1.58e-07,3;CL:1000428,1.58e-07,3;CL:0000064,1.93e-07,3;CL:0000067,1.93e-07,3;CL:0005012,1.93e-07,3;CL:0002304,1.93e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007625!1.76e-11!11;UBERON:0000970!8.71e-10!20;UBERON:0002104!4.05e-09!21;UBERON:0000019!4.10e-09!19;UBERON:0000047!4.10e-09!19;UBERON:0004088!4.10e-09!19;UBERON:0003072!4.10e-09!19;UBERON:0003071!4.10e-09!19;UBERON:0004128!4.10e-09!19;UBERON:0002203!4.62e-08!6;UBERON:0001768!4.62e-08!6;UBERON:0000020!5.73e-08!23;UBERON:0001456!7.00e-08!21;UBERON:0005085!1.18e-07!29;UBERON:0003056!1.73e-07!61;UBERON:0001032!1.81e-07!24;UBERON:0004456!1.81e-07!24;UBERON:0002097!6.89e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;6.57e-22;11!UBERON:0000019;2.67e-12;19!UBERON:0000047;2.67e-12;19!UBERON:0004088;2.67e-12;19!UBERON:0010230;2.67e-12;19!UBERON:0000488;1.10e-11;4!UBERON:0000970;1.22e-11;20!UBERON:0010371;1.42e-11;31!UBERON:0002104;4.85e-11;21!UBERON:0001456;4.85e-11;21!UBERON:0000020;5.33e-10;23!UBERON:0001032;1.52e-09;24!UBERON:0004456;1.52e-09;24!UBERON:0001801;7.98e-09;14!UBERON:0001781;5.34e-08;3!UBERON:0001782;5.34e-08;3!UBERON:0002203;6.04e-08;6!UBERON:0001768;6.04e-08;6!UBERON:0002200;6.04e-08;6!UBERON:0000412;2.19e-07;3!UBERON:0001778;2.19e-07;3!UBERON:0001992;2.19e-07;3!UBERON:0001775;2.19e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,4.79e-22,11;UBERON:0000488,9.16e-12,4;UBERON:0005085,9.27e-12,31;UBERON:0000019,1.04e-11,20;UBERON:0000047,1.04e-11,20;UBERON:0010312,1.04e-11,20;UBERON:0004088,1.04e-11,20;UBERON:0010230,1.04e-11,20;UBERON:0003072,1.04e-11,20;UBERON:0004128,1.04e-11,20;UBERON:0003071,1.04e-11,20;UBERON:0000970,4.14e-11,21;UBERON:0002104,4.14e-11,21;UBERON:0001456,1.46e-10,22;UBERON:0000020,1.33e-09,24;UBERON:0001032,1.33e-09,24;UBERON:0004456,1.33e-09,24;UBERON:0001801,7.09e-09,14;UBERON:0001782,4.82e-08,3;UBERON:0005424,4.82e-08,3;UBERON:0002203,5.35e-08,6;UBERON:0001768,5.35e-08,6;UBERON:0002200,5.35e-08,6;UBERON:0000412,1.58e-07,3;UBERON:0001992,1.58e-07,3;UBERON:0001778,1.93e-07,3;UBERON:0001775,1.93e-07,3 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,1.0007329835313,0,0,0,0,0,0.245733936501509,0,0.655324116390517,0,0,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,1.03988298880475,0.443458794925128,1.93236528524877,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0,0,0.877955241761676,0.612975591598039,0,0,1.07633781413317,2.13557388818567,0.211931901159562,0,0.103052529238439,0.515281080091258,0.744467425326359,0,0.0974370051611986,0,0.828449087780694,0,1.06502877754984,2.41805035746337,0.169560592310488,0,0,0,0,0.265059536642971,0.580969714347592,0.10366105501537,1.00928340350251,0,1.56449532329816,1.92972281457866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368965315629341,2.57351715447788,0.219500570817251,0,0,0.0925884451585296,0,0,4.3299402607582,0.463721619900307,2.58299127318808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0.542621605391443,0.823240336780769,0,0,0.791951872933429,0,0,0.099972991182057,0,0,0,0,0,0,1.44781306667579,0.410952645100767,0.358121926479791,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,2.28767947683888,2.67643483195743,12.4584907876808,3.98280810975225,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0.30239029332968,0,0,0,0,1.02341449813341,0,0,0,0,0,0,0,0.725156697549733,0,0,0.34444334449382,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,7.87235149679294,2.60302715731442,0,0.54941678891006,0.247528499761764,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0.143411352204052,0.687743287091848,0,0,0,0,0.379473173765715,0.699869440489966,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,3.20472213382419,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,0,0,0,2.48831670129446,0,0,0,0,0,0,0,0,3.99227596002388,0.260427761085233,0.0874599999961957,0,0.1137934482855,0,1.65471377237555,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0.139423744278603,0,0.569710279235006,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0.706765357169704,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0.61214552326098,0,0.450970258243478,0.414752765588989,0,0,0,0,0,0,0.694238953340524,0.195984794828755,0,0,0,0,0,0,0,0,0.225980740780532,0.411125773940253,0,0,0,0,0,0.19980960958213,0.288180834308212,0,0,0,4.9701014226173,0,0,0,5.40590553472505,0,0,0,0,3.0083580899397,0,0,0,0,0,0,0,0,0,0,0,0,0,0.688992370603241,0,0,0.408610218334727,0,0.275078873194468,0,0,0,0.121499113316049,0.335434687599266,0.0788057072991982,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0.340776043570843,1.01980882368113,0,0,0,0,0,0,0.106787412567695,1.57204305099666,0,0,0,0.121792598380896,0,0,0,0,0,0.314108192500469,0,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,0,0.499921631848426,0,0.285465333544967,0.470531639396343,0,0.144921028610825,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0.398095888698616,8.00055529326307,0,0,6.30924491143255,0,0,5.74187442323465,4.0807066592209,0,0,0,0.617602894321944,0,0,0,0,0,1.72715170865599,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0.567515953566836,0,0.139879507719444,0,0,0,0,0.764467467344097,0,0,0,0,0,0,0,0,1.2249819094128,0,0,0,0,0.252071696221718,0.138314504928436,0,0,0,0.825788063434183,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.0675375846183947,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,0,0.280272163313789,0,0,0,0.0714765441766563,0,0.116241425368125,0,0,0,0,0,0,0,0,0.423387050190929,0.22910686854405,0,0,0,0,0,0,0,0,0,0.233939463462106,0.198950775161368,0.594600453887843,0,0,0,0,0.218559560503957,0.470317296361523,0,0.235676547101626,0,0,0.4226557275834,0.339854229375634,0,0.193373663920732,0,0.178553938605658,0,0,0,0,0,0,0.0679914901909147,0.436350690340377,0,0,0,0,0.252332849670158,0.218531143927391,0,0,0,0.0918948995348449,0.250707539292375,0.303114792872958,1.07185652062471,0.829169439458779,0.103432995861895,0,0,0,0,0,0,0,0,0,0.134704106029175,0.0717222053926763,0,0.162806537221949,0,0,0,2.34640942403454,0.244482888365733,0,0,0,3.52625341533556 | 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| ||
|short_description=p5@LYPD6B | |||
}} | }} |
Latest revision as of 10:37, 17 September 2015
Short description: | p5@LYPD6B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LYPD6B_5end |
Coexpression cluster: | C2660_Olfactory_mesodermal_mesenchymal_Retinal_glioblastoma_Fibroblast_basal |
Association with transcript: | 0bp_to_ENST00000409642, NM_177964, uc002twv.1, uc002tww.1_5end |
EntrezGene: | LYPD6B |
HGNC: | 27018 |
UniProt: | Q8NI32 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
receptor cell | 2.99e-14 | 6 |
sensory epithelial cell | 2.99e-14 | 6 |
olfactory epithelial cell | 2.99e-14 | 6 |
columnar/cuboidal epithelial cell | 9.43e-14 | 27 |
neurecto-epithelial cell | 1.60e-11 | 20 |
retinal pigment epithelial cell | 4.82e-08 | 3 |
neurectodermal cell | 7.26e-08 | 59 |
hair follicle dermal papilla cell | 1.58e-07 | 3 |
stem cell of epidermis | 1.58e-07 | 3 |
ciliated cell | 1.93e-07 | 3 |
ciliated epithelial cell | 1.93e-07 | 3 |
multi-ciliated epithelial cell | 1.93e-07 | 3 |
non-pigmented ciliary epithelial cell | 1.93e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 4.79e-22 | 11 |
atypical epithelium | 9.16e-12 | 4 |
ectodermal placode | 9.27e-12 | 31 |
camera-type eye | 1.04e-11 | 20 |
simple eye | 1.04e-11 | 20 |
immature eye | 1.04e-11 | 20 |
ocular region | 1.04e-11 | 20 |
eyeball of camera-type eye | 1.04e-11 | 20 |
optic cup | 1.04e-11 | 20 |
optic vesicle | 1.04e-11 | 20 |
eye primordium | 1.04e-11 | 20 |
eye | 4.14e-11 | 21 |
visual system | 4.14e-11 | 21 |
face | 1.46e-10 | 22 |
sense organ | 1.33e-09 | 24 |
sensory system | 1.33e-09 | 24 |
entire sense organ system | 1.33e-09 | 24 |
anterior segment of eyeball | 7.09e-09 | 14 |
pigmented layer of retina | 4.82e-08 | 3 |
presumptive retinal pigmented epithelium | 4.82e-08 | 3 |
vasculature of eye | 5.35e-08 | 6 |
uvea | 5.35e-08 | 6 |
vasculature of head | 5.35e-08 | 6 |
dermal papilla | 1.58e-07 | 3 |
papillary layer of dermis | 1.58e-07 | 3 |
ciliary epithelium | 1.93e-07 | 3 |
ciliary body | 1.93e-07 | 3 |