FFCP PHASE1:Hg19::chr22:22901636..22901715,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:22901636..22901715,- to FFCP PHASE1:Hg19::chr22:22901636..22901715,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23532 | |EntrezGene=23532 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9336 | |HGNC=9336 | ||
|TSSclassifier=strong | |||
|UniProt=P78395,B5MCY4,E7EW99 | |UniProt=P78395,B5MCY4,E7EW99 | ||
|association_with_transcript=0bp_to_ENST00000402697,ENST00000406503,ENST00000439106,ENST00000543184,NM_006115,NM_206953,NM_206954,uc002zwi.2,uc002zwj.2,uc002zwk.2_5end | |||
|cluster_id=chr22:22901636..22901715,- | |||
|coexpression_cluster_id=C93 | |||
|description=CAGE_peak_1_at_PRAME_5end | |||
|id=chr22:22901636..22901715,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002149;1.31e-08;6!CL:0002255;1.31e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,1.37e-08,6;CL:0002255,1.37e-08,6;CL:0000066,2.73e-08,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.56e-11;29 | |||
|ontology_enrichment_disease=DOID:14566!3.02e-52!239;DOID:162!6.63e-52!235;DOID:0050687!1.06e-31!143;DOID:0050686!6.49e-29!137;DOID:305!3.20e-24!106;DOID:2531!8.73e-14!51;DOID:0060083!8.73e-14!51;DOID:1240!9.21e-12!39;DOID:8692!5.77e-11!31;DOID:1036!6.11e-08!8 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.93e-15;31!DOID:1240;2.56e-12;39!DOID:0050687;1.08e-10;143!DOID:2531;7.24e-10;51!DOID:0060083;7.24e-10;51!DOID:299;1.71e-09;25!DOID:1036;3.04e-09;8!DOID:305;8.29e-09;106!DOID:3001;1.31e-08;6!DOID:162;5.00e-08;235!DOID:0050686;3.58e-07;137!DOID:1115;6.12e-07;20!DOID:14566;6.41e-07;239 | |||
|ontology_enrichment_disease_v019_2=DOID:14566,3.55e-57,239;DOID:162,4.06e-56,235;DOID:0050687,4.73e-40,143;DOID:0050686,1.99e-30,137;DOID:305,1.00e-29,106;DOID:8692,7.65e-15,31;DOID:1240,1.85e-14,39;DOID:2531,5.09e-14,51;DOID:0060083,5.09e-14,51;DOID:299,1.73e-09,25;DOID:1036,3.32e-09,8;DOID:3001,1.37e-08,6;DOID:1115,6.29e-07,20 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.58e-08!9;UBERON:0002113!4.74e-07!27;UBERON:0003918!4.74e-07!27;UBERON:0005095!4.74e-07!27;UBERON:0007687!4.74e-07!27;UBERON:0005177!5.67e-07!107;UBERON:0003886!7.29e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.38e-11;9!UBERON:0001557;1.38e-11;9!UBERON:0000072;2.82e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.25e-11,9;UBERON:0008947,1.13e-07,38;UBERON:0003258,1.13e-07,38 | |||
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| ||
|short_description=p1@PRAME | |||
}} | }} |
Latest revision as of 07:45, 19 September 2015
Short description: | p1@PRAME |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRAME_5end |
Coexpression cluster: | C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular |
Association with transcript: | 0bp_to_ENST00000402697, ENST00000406503, ENST00000439106, ENST00000543184, NM_006115, NM_206953, NM_206954, uc002zwi.2, uc002zwj.2, uc002zwk.2_5end |
EntrezGene: | PRAME |
HGNC: | 9336 |
UniProt: | P78395B5MCY4E7EW99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 1.37e-08 | 6 |
stromal cell of endometrium | 1.37e-08 | 6 |
epithelial cell | 2.73e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 1.25e-11 | 9 |
respiratory primordium | 1.13e-07 | 38 |
endoderm of foregut | 1.13e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.55e-57 | 239 |
cancer | 4.06e-56 | 235 |
cell type cancer | 4.73e-40 | 143 |
organ system cancer | 1.99e-30 | 137 |
carcinoma | 1.00e-29 | 106 |
myeloid leukemia | 7.65e-15 | 31 |
leukemia | 1.85e-14 | 39 |
hematologic cancer | 5.09e-14 | 51 |
immune system cancer | 5.09e-14 | 51 |
adenocarcinoma | 1.73e-09 | 25 |
chronic leukemia | 3.32e-09 | 8 |
female reproductive endometrioid cancer | 1.37e-08 | 6 |
sarcoma | 6.29e-07 | 20 |