FFCP PHASE1:Hg19::chr21:36260980..36261011,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr21:36260980..36261011,- to FFCP PHASE1:Hg19::chr21:36260980..36261011,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=861 | |EntrezGene=861 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10471 | |HGNC=10471 | ||
|TSSclassifier=strong | |||
|UniProt=Q01196 | |UniProt=Q01196 | ||
|association_with_transcript=0bp_to_ENST00000344691,ENST00000358356,NM_001001890,NM_001122607,uc002yuh.2,uc002yui.2,uc002yuo.1_5end | |||
|cluster_id=chr21:36260980..36261011,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_1_at_RUNX1_5end | |||
|id=chr21:36260980..36261011,- | |||
|ontology_enrichment_celltype=CL:0000763!5.22e-20!112;CL:0000049!5.22e-20!112;CL:0000012!4.23e-17!682;CL:0000548!5.20e-16!679;CL:0000004!5.20e-16!679;CL:0000255!5.20e-16!679;CL:0002194!5.33e-16!63;CL:0000576!5.33e-16!63;CL:0000040!5.33e-16!63;CL:0000559!5.33e-16!63;CL:0002057!4.15e-15!42;CL:0000063!5.87e-15!578;CL:0002009!1.39e-14!65;CL:0000557!1.94e-14!71;CL:0000839!3.11e-14!70;CL:0000766!6.34e-14!76;CL:0002371!6.77e-13!591;CL:0000860!1.13e-12!45;CL:0000144!1.51e-12!625;CL:0000134!3.75e-11!358;CL:0002320!1.26e-10!365;CL:0000003!3.08e-09!722;CL:0000048!5.11e-09!430;CL:0000723!5.19e-09!436;CL:0000219!2.39e-08!390;CL:0000034!2.77e-08!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.48e-17;33!CL:0002057;2.48e-17;33!CL:0000473;1.00e-13;39!CL:0000234;1.00e-13;39!CL:0000576;1.05e-10;48!CL:0000763;1.64e-08;100!CL:0000766;3.20e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,2.74e-21,108;CL:0000049,2.74e-21,108;CL:0002194,1.04e-17,59;CL:0000576,1.04e-17,59;CL:0000040,1.04e-17,59;CL:0000559,1.04e-17,59;CL:0002009,4.00e-16,61;CL:0000557,7.36e-16,67;CL:0000839,1.18e-15,66;CL:0000766,3.13e-15,72;CL:0000860,4.13e-15,42;CL:0002057,4.13e-15,42;CL:0000473,1.43e-14,48;CL:0000234,1.43e-14,48;CL:0000134,5.18e-12,354;CL:0002320,1.87e-11,361;CL:0000048,6.59e-10,427;CL:0000723,6.59e-10,433;CL:0000034,4.08e-09,441;CL:0000219,4.62e-09,386 | |||
|ontology_enrichment_development_v019=CL:0002057;9.23e-12;42!CL:0000049;2.42e-07;108 | |||
|ontology_enrichment_disease=DOID:8692!8.09e-13!31;DOID:1240!2.58e-11!39;DOID:0050686!4.21e-09!137;DOID:2531!9.22e-09!51;DOID:0060083!9.22e-09!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.90e-12;31!DOID:1240;7.49e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,8.06e-13,31;DOID:1240,2.58e-11,39;DOID:0050686,3.81e-09,137;DOID:2531,9.27e-09,51;DOID:0060083,9.27e-09,51 | |||
|ontology_enrichment_uberon=UBERON:0002371!7.18e-13!80;UBERON:0001474!4.22e-11!86;UBERON:0002384!2.34e-10!375;UBERON:0004765!6.84e-10!101;UBERON:0001434!6.84e-10!101;UBERON:0002390!6.44e-09!102;UBERON:0003061!6.44e-09!102;UBERON:0002204!3.34e-08!167;UBERON:0002193!9.16e-07!112;UBERON:0002405!9.40e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.79e-14,76;UBERON:0001474,4.95e-12,82;UBERON:0002384,3.48e-11,371;UBERON:0004765,9.34e-11,90;UBERON:0001434,3.12e-10,100;UBERON:0002390,1.23e-09,98;UBERON:0003061,1.23e-09,98;UBERON:0002204,1.34e-08,167;UBERON:0002405,1.45e-08,93;UBERON:0002193,2.64e-07,108 | |||
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| ||
|short_description=p1@RUNX1 | |||
}} | }} |
Latest revision as of 06:40, 18 September 2015
Short description: | p1@RUNX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RUNX1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000344691, ENST00000358356, NM_001001890, NM_001122607, uc002yuh.2, uc002yui.2, uc002yuo.1_5end |
EntrezGene: | RUNX1 |
HGNC: | 10471 |
UniProt: | Q01196 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 2.74e-21 | 108 |
common myeloid progenitor | 2.74e-21 | 108 |
monopoietic cell | 1.04e-17 | 59 |
monocyte | 1.04e-17 | 59 |
monoblast | 1.04e-17 | 59 |
promonocyte | 1.04e-17 | 59 |
macrophage dendritic cell progenitor | 4.00e-16 | 61 |
granulocyte monocyte progenitor cell | 7.36e-16 | 67 |
myeloid lineage restricted progenitor cell | 1.18e-15 | 66 |
myeloid leukocyte | 3.13e-15 | 72 |
classical monocyte | 4.13e-15 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.13e-15 | 42 |
defensive cell | 1.43e-14 | 48 |
phagocyte | 1.43e-14 | 48 |
mesenchymal cell | 5.18e-12 | 354 |
connective tissue cell | 1.87e-11 | 361 |
multi fate stem cell | 6.59e-10 | 427 |
somatic stem cell | 6.59e-10 | 433 |
stem cell | 4.08e-09 | 441 |
motile cell | 4.62e-09 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.79e-14 | 76 |
bone element | 4.95e-12 | 82 |
connective tissue | 3.48e-11 | 371 |
skeletal element | 9.34e-11 | 90 |
skeletal system | 3.12e-10 | 100 |
hematopoietic system | 1.23e-09 | 98 |
blood island | 1.23e-09 | 98 |
musculoskeletal system | 1.34e-08 | 167 |
immune system | 1.45e-08 | 93 |
hemolymphoid system | 2.64e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 8.06e-13 | 31 |
leukemia | 2.58e-11 | 39 |
organ system cancer | 3.81e-09 | 137 |
hematologic cancer | 9.27e-09 | 51 |
immune system cancer | 9.27e-09 | 51 |