FFCP PHASE1:Hg19::chr20:47804860..47804892,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:47804860..47804892,- to FFCP PHASE1:Hg19::chr20:47804860..47804892,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6780 | |EntrezGene=6780 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11370 | |HGNC=11370 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JW30,Q5JW29,O95793,Q5JW28,B3KRE0,Q6PJX3 | |UniProt=Q5JW30,Q5JW29,O95793,Q5JW28,B3KRE0,Q6PJX3 | ||
|association_with_transcript=11bp_to_ENST00000340954,ENST00000347458,ENST00000360426,ENST00000371792,ENST00000371802,ENST00000371805,ENST00000371828,ENST00000371856,ENST00000437404,NM_001037328,NM_004602,NM_017452,NM_017453,NM_017454,uc002xua.2,uc002xub.2,uc002xuc.2,uc002xud.2,uc002xue.2,uc002xuf.2_5end | |||
|cluster_id=chr20:47804860..47804892,- | |||
|description=CAGE_peak_1_at_STAU1_5end | |||
|id=chr20:47804860..47804892,- | |||
|ontology_enrichment_celltype=CL:0000066!8.83e-09!254;CL:0000223!2.55e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.11e-08,253;CL:0000223,6.89e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0001041;3.15e-10;30!UBERON:0003104;4.48e-09;31!UBERON:0009497;1.88e-07;13!UBERON:0004161;5.55e-07;11 | |||
|ontology_enrichment_disease=DOID:0050687!8.85e-29!143;DOID:305!2.36e-23!106;DOID:162!1.13e-16!235;DOID:14566!2.41e-15!239;DOID:7!6.06e-08!39;DOID:299!6.31e-08!25;DOID:3095!8.47e-07!22;DOID:2994!8.47e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:299;6.23e-08;25!DOID:305;1.75e-07;106!DOID:0050687;7.62e-07;143!DOID:3095;8.30e-07;22!DOID:2994;8.30e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,8.85e-29,143;DOID:305,2.36e-23,106;DOID:162,1.13e-16,235;DOID:14566,2.41e-15,239;DOID:7,6.06e-08,39;DOID:299,6.31e-08,25;DOID:3095,8.47e-07,22;DOID:2994,8.47e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0005177!3.80e-12!107;UBERON:0000949!3.01e-10!45;UBERON:0000466!1.33e-09!126;UBERON:0005172!5.76e-09!55;UBERON:0005173!5.76e-09!55;UBERON:0005911!5.96e-09!82;UBERON:0001007!2.84e-08!155;UBERON:0001555!2.84e-08!155;UBERON:0007026!2.84e-08!155;UBERON:0009569!3.12e-08!113;UBERON:0002417!4.57e-08!61;UBERON:0000916!4.57e-08!61;UBERON:0007023!2.18e-07!115;UBERON:0004921!2.45e-07!129;UBERON:0004185!2.45e-07!129;UBERON:0009497!2.81e-07!25;UBERON:0000015!2.81e-07!25;UBERON:0002423!2.81e-07!25;UBERON:0006235!2.81e-07!25;UBERON:0004161!2.81e-07!25;UBERON:0002368!3.02e-07!35;UBERON:0004119!4.99e-07!169;UBERON:0000925!4.99e-07!169;UBERON:0006595!4.99e-07!169;UBERON:0009856!6.76e-07!26;UBERON:0007499!9.65e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000949;2.26e-08;43!UBERON:0002423;2.82e-07;25!UBERON:0002368;3.03e-07;33!UBERON:0000922;5.97e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,5.69e-13,101;UBERON:0000949,3.01e-10,45;UBERON:0005911,5.96e-09,82;UBERON:0005172,7.24e-09,54;UBERON:0005173,7.24e-09,54;UBERON:0009569,1.17e-08,112;UBERON:0002417,5.78e-08,60;UBERON:0000916,5.78e-08,60;UBERON:0011216,8.85e-08,223;UBERON:0007023,2.41e-07,114;UBERON:0009497,2.81e-07,25;UBERON:0000015,2.81e-07,25;UBERON:0002423,2.81e-07,25;UBERON:0006235,2.81e-07,25;UBERON:0004161,2.81e-07,25;UBERON:0002368,3.02e-07,35;UBERON:0009856,6.76e-07,26;UBERON:0007499,9.65e-07,25 | |||
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| ||
|short_description=p1@STAU1 | |||
}} | }} |
Latest revision as of 18:32, 16 September 2015
Short description: | p1@STAU1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_STAU1_5end |
Coexpression cluster: | NA |
Association with transcript: | 11bp_to_ENST00000340954, ENST00000347458, ENST00000360426, ENST00000371792, ENST00000371802, ENST00000371805, ENST00000371828, ENST00000371856, ENST00000437404, NM_001037328, NM_004602, NM_017452, NM_017453, NM_017454, uc002xua.2, uc002xub.2, uc002xuc.2, uc002xud.2, uc002xue.2, uc002xuf.2_5end |
EntrezGene: | STAU1 |
HGNC: | 11370 |
UniProt: | Q5JW30Q5JW29O95793Q5JW28B3KRE0Q6PJX3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.11e-08 | 253 |
endodermal cell | 6.89e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 5.69e-13 | 101 |
endocrine system | 3.01e-10 | 45 |
endo-epithelium | 5.96e-09 | 82 |
abdomen element | 7.24e-09 | 54 |
abdominal segment element | 7.24e-09 | 54 |
subdivision of trunk | 1.17e-08 | 112 |
abdominal segment of trunk | 5.78e-08 | 60 |
abdomen | 5.78e-08 | 60 |
organ system subdivision | 8.85e-08 | 223 |
adult organism | 2.41e-07 | 114 |
epithelium of foregut-midgut junction | 2.81e-07 | 25 |
anatomical boundary | 2.81e-07 | 25 |
hepatobiliary system | 2.81e-07 | 25 |
foregut-midgut junction | 2.81e-07 | 25 |
septum transversum | 2.81e-07 | 25 |
endocrine gland | 3.02e-07 | 35 |
sac | 6.76e-07 | 26 |
epithelial sac | 9.65e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 8.85e-29 | 143 |
carcinoma | 2.36e-23 | 106 |
cancer | 1.13e-16 | 235 |
disease of cellular proliferation | 2.41e-15 | 239 |
disease of anatomical entity | 6.06e-08 | 39 |
adenocarcinoma | 6.31e-08 | 25 |
germ cell and embryonal cancer | 8.47e-07 | 22 |
germ cell cancer | 8.47e-07 | 22 |