FFCP PHASE1:Hg19::chr20:47804765..47804776,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:47804765..47804776,- to FFCP PHASE1:Hg19::chr20:47804765..47804776,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6780 | |EntrezGene=6780 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11370 | |HGNC=11370 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JW30,Q5JW29,O95793,Q5JW28,B3KRE0,Q6PJX3 | |UniProt=Q5JW30,Q5JW29,O95793,Q5JW28,B3KRE0,Q6PJX3 | ||
|association_with_transcript=127bp_to_ENST00000340954,ENST00000347458,ENST00000360426,ENST00000371792,ENST00000371802,ENST00000371805,ENST00000371828,ENST00000371856,ENST00000437404,NM_001037328,NM_004602,NM_017452,NM_017453,NM_017454,uc002xua.2,uc002xub.2,uc002xuc.2,uc002xud.2,uc002xue.2,uc002xuf.2_5end | |||
|cluster_id=chr20:47804765..47804776,- | |||
|description=CAGE_peak_5_at_STAU1_5end | |||
|id=chr20:47804765..47804776,- | |||
|ontology_enrichment_celltype=CL:0000057!2.29e-08!75;CL:0000222!4.60e-08!119;CL:0000055!7.35e-08!180;CL:0000213!4.83e-07!57;CL:0000215!4.83e-07!57;CL:0000071!8.92e-07!18;CL:0002546!8.92e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000071;3.56e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.07e-09,76;CL:0000222,1.67e-08,121;CL:0000213,2.49e-07,58;CL:0000215,2.49e-07,58;CL:0000071,8.50e-07,18;CL:0002546,8.50e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;3.56e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!3.89e-13!118;UBERON:0001981!1.45e-10!60;UBERON:0007500!1.45e-10!60;UBERON:0004537!1.45e-10!60;UBERON:0006965!1.45e-10!60;UBERON:0004872!3.73e-10!84;UBERON:0004111!1.25e-09!241;UBERON:0002100!1.27e-09!216;UBERON:0000490!4.16e-09!138;UBERON:0000475!6.05e-09!365;UBERON:0000477!7.06e-09!286;UBERON:0000055!7.56e-09!69;UBERON:0000025!8.79e-08!194;UBERON:0006914!1.67e-07!25;UBERON:0002049!2.53e-07!79;UBERON:0007798!2.53e-07!79;UBERON:0000468!3.12e-07!659;UBERON:0000119!3.31e-07!312;UBERON:0000487!3.52e-07!22;UBERON:0005256!3.54e-07!143;UBERON:0000467!7.09e-07!625;UBERON:0001986!8.92e-07!18;UBERON:0004638!8.92e-07!18;UBERON:0004852!8.92e-07!18;UBERON:0000480!9.44e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0006914;2.25e-07;25!UBERON:0000487;2.52e-07;22!UBERON:0004638;3.56e-07;18!UBERON:0001986;3.56e-07;18!UBERON:0004852;3.56e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,4.79e-13,117;UBERON:0007500,3.46e-10,59;UBERON:0001981,3.46e-10,59;UBERON:0004537,3.46e-10,59;UBERON:0006965,3.46e-10,59;UBERON:0004872,6.48e-10,83;UBERON:0000490,1.21e-09,148;UBERON:0004111,3.75e-09,240;UBERON:0002100,6.37e-09,199;UBERON:0000055,1.75e-08,68;UBERON:0005256,9.99e-08,122;UBERON:0006914,2.11e-07,25;UBERON:0000025,2.52e-07,192;UBERON:0003104,3.35e-07,160;UBERON:0009142,3.35e-07,160;UBERON:0000119,3.52e-07,309;UBERON:0000487,4.50e-07,22;UBERON:0002049,5.29e-07,78;UBERON:0007798,5.29e-07,78;UBERON:0004638,8.50e-07,18;UBERON:0001986,8.50e-07,18;UBERON:0004852,8.50e-07,18 | |||
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| ||
|short_description=p5@STAU1 | |||
}} | }} |
Latest revision as of 18:29, 16 September 2015
Short description: | p5@STAU1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_STAU1_5end |
Coexpression cluster: | NA |
Association with transcript: | 127bp_to_ENST00000340954, ENST00000347458, ENST00000360426, ENST00000371792, ENST00000371802, ENST00000371805, ENST00000371828, ENST00000371856, ENST00000437404, NM_001037328, NM_004602, NM_017452, NM_017453, NM_017454, uc002xua.2, uc002xub.2, uc002xuc.2, uc002xud.2, uc002xue.2, uc002xuf.2_5end |
EntrezGene: | STAU1 |
HGNC: | 11370 |
UniProt: | Q5JW30Q5JW29O95793Q5JW28B3KRE0Q6PJX3 |
Genome view: | ZENBU |
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CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.07e-09 | 76 |
mesodermal cell | 1.67e-08 | 121 |
lining cell | 2.49e-07 | 58 |
barrier cell | 2.49e-07 | 58 |
blood vessel endothelial cell | 8.50e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.50e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 4.79e-13 | 117 |
epithelial tube open at both ends | 3.46e-10 | 59 |
blood vessel | 3.46e-10 | 59 |
blood vasculature | 3.46e-10 | 59 |
vascular cord | 3.46e-10 | 59 |
splanchnic layer of lateral plate mesoderm | 6.48e-10 | 83 |
unilaminar epithelium | 1.21e-09 | 148 |
anatomical conduit | 3.75e-09 | 240 |
trunk | 6.37e-09 | 199 |
vessel | 1.75e-08 | 68 |
trunk mesenchyme | 9.99e-08 | 122 |
squamous epithelium | 2.11e-07 | 25 |
tube | 2.52e-07 | 192 |
mesenchyme | 3.35e-07 | 160 |
entire embryonic mesenchyme | 3.35e-07 | 160 |
cell layer | 3.52e-07 | 309 |
simple squamous epithelium | 4.50e-07 | 22 |
vasculature | 5.29e-07 | 78 |
vascular system | 5.29e-07 | 78 |
blood vessel endothelium | 8.50e-07 | 18 |
endothelium | 8.50e-07 | 18 |
cardiovascular system endothelium | 8.50e-07 | 18 |