FFCP PHASE1:Hg19::chr1:78956651..78956747,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:78956651..78956747,+ to FFCP PHASE1:Hg19::chr1:78956651..78956747,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5737 | |EntrezGene=5737 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9600 | |HGNC=9600 | ||
|TSSclassifier=strong | |||
|UniProt=P43088 | |UniProt=P43088 | ||
|association_with_transcript=0bp_to_NM_000959,NM_001039585,uc001dim.2,uc001din.2_5end | |||
|cluster_id=chr1:78956651..78956747,+ | |||
|description=CAGE_peak_1_at_PTGFR_5end | |||
|id=chr1:78956651..78956747,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.88e-32!180;CL:0000057!3.88e-20!75;CL:0002620!4.06e-12!23;CL:0000680!1.57e-11!57;CL:0000056!1.57e-11!57;CL:0000355!1.57e-11!57;CL:0000187!2.46e-10!54;CL:0000183!4.40e-09!59;CL:0000393!2.00e-08!60;CL:0000211!2.00e-08!60;CL:0000192!1.99e-07!42;CL:0000514!1.99e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.75e-13;23!CL:0000057;1.28e-08;73!CL:0002320;2.20e-07;188!CL:0000723;4.31e-07;61!CL:0000134;6.67e-07;55!CL:0000187;9.07e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.92e-21,76;CL:0002620,1.42e-13,23;CL:0000680,6.68e-13,58;CL:0000056,6.68e-13,58;CL:0000355,6.68e-13,58;CL:0000187,1.50e-11,55;CL:0000393,7.35e-09,61;CL:0000211,7.35e-09,61;CL:0000192,2.70e-08,43;CL:0000514,2.70e-08,43;CL:0000359,6.45e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000355;1.78e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!8.06e-19!83;UBERON:0002329!8.06e-19!83;UBERON:0003077!8.06e-19!83;UBERON:0003059!8.06e-19!83;UBERON:0007282!8.06e-19!83;UBERON:0009618!8.06e-19!83;UBERON:0007285!8.06e-19!83;UBERON:0004290!3.04e-15!70;UBERON:0000475!1.91e-12!365;UBERON:0003102!2.43e-12!95;UBERON:0002385!3.31e-12!63;UBERON:0001015!3.31e-12!63;UBERON:0000383!3.31e-12!63;UBERON:0000486!3.51e-12!82;UBERON:0001134!1.16e-11!61;UBERON:0002036!1.16e-11!61;UBERON:0003082!1.16e-11!61;UBERON:0005256!5.08e-11!143;UBERON:0000468!1.06e-10!659;UBERON:0000481!3.60e-10!347;UBERON:0002199!1.20e-08!45;UBERON:0002416!1.20e-08!45;UBERON:0002097!2.21e-08!40;UBERON:0002100!2.35e-07!216;UBERON:0003104!2.92e-07!238;UBERON:0009142!2.92e-07!238;UBERON:0000467!3.78e-07!625;UBERON:0000480!5.54e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;9.32e-09;31!UBERON:0001015;9.32e-09;31!UBERON:0000383;9.32e-09;31!UBERON:0002204;1.23e-08;70!UBERON:0002384;2.46e-08;198!UBERON:0002097;2.57e-08;41!UBERON:0001134;1.06e-07;16!UBERON:0002036;1.06e-07;16!UBERON:0002199;1.18e-07;46!UBERON:0002416;1.18e-07;46!UBERON:0004905;3.62e-07;8!UBERON:0000982;3.62e-07;8!UBERON:0004770;3.62e-07;8!UBERON:0003102;7.79e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.55e-17,73;UBERON:0002329,2.85e-17,71;UBERON:0003059,2.85e-17,71;UBERON:0007282,2.85e-17,71;UBERON:0004290,2.85e-17,71;UBERON:0009618,2.85e-17,71;UBERON:0003077,1.06e-16,72;UBERON:0007285,1.06e-16,72;UBERON:0003102,3.66e-14,99;UBERON:0000486,4.77e-14,83;UBERON:0002385,8.17e-14,64;UBERON:0001015,8.17e-14,64;UBERON:0000383,8.17e-14,64;UBERON:0007503,1.20e-13,78;UBERON:0001134,3.40e-13,62;UBERON:0002036,3.40e-13,62;UBERON:0003082,3.40e-13,62;UBERON:0003104,4.71e-13,160;UBERON:0009142,4.71e-13,160;UBERON:0005256,1.69e-11,122;UBERON:0002199,3.10e-11,46;UBERON:0002416,3.10e-11,46;UBERON:0002097,7.69e-11,41;UBERON:0004905,3.70e-07,8;UBERON:0000982,3.70e-07,8;UBERON:0004770,3.70e-07,8;UBERON:0002100,6.13e-07,199 | |||
|phase1_expression=6.7221000330106,14.7729361484778,3.38290569830331,14.0102617694383,2.23480547213644,6.10636966870258,0,11.370957721683,30.8199041275809,0,0,1.52908960491121,0,176.119520262146,179.285980268802,2.6893005858071,0,1.46062018077475,1.46379839637152,3.57051068422685,3.06001036866379,0.626909442956176,0.572471974262113,0.273748850145768,1.00434111675842,0,0,0,0,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0.872389432677388,0.377875943688809,0,1.16214518452842,0,0,0.28769239232215,0.512321413058201,0.236482229888585,0.344745680736619,0.645484683583826,0,0.564727018627814,0,0,0.306083892370903,0.641858054152187,0,0,0,0,0.870627715885752,0,0,0.75374599577023,0,0.217188844705117,3.63239701580021,0.368277635987565,0,0,0,0,0.561643155732475,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0.167186495390678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.12786256184353,40.1197459146869,45.621749867866,70.9747942908036,9.54343136461319,18.4921250715002,2.55244006342983,0.443458794925128,0.966182642624386,4.6497571801688,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0,0.419499436209906,0.275118041940067,0,0.258416759169329,0.71153252537342,2.00832367658802,1.20848795132744,0.760272105718513,0.488124115096339,2.94130464276695,0,0.357198913136319,0.22452937262617,0.112611480483322,0,0,0.732806975721629,0,0,0,2.98183171017191,11.3967460498122,10.7251436458707,39.8702902840851,18.4427558743146,0.560677600142307,1.06748995729705,7.4000264525148,5.91300967259556,2.69421344139376,0,0.302714855289863,1.72852777344,4.92075006850973,16.544484072007,5.70471821544449,14.1976246524211,21.2556442545214,18.9391344910714,14.4664330903316,52.0593136699978,18.9164848660123,96.0929764934619,123.552297157334,42.2826449066332,1.82032272387605,2.87447256726495,13.8035613442334,27.1507188122162,48.7632843252162,28.9725229781353,6.74273150757843,36.9585624910228,0.567160915800105,17.5801842975085,52.9622324270047,14.4113692788502,22.2067411102458,22.2593463155028,22.930008064061,22.706256472454,48.1012546887609,22.8002592077205,14.8935926804028,35.4392109772852,47.6855867615495,28.4007674013291,17.2286087969265,15.0908927156334,0,0,0,0,0,0,0.310983165046111,0,0,26.5964204960687,46.9565884880806,13.8134921352481,64.5471419964451,50.531563716871,0.946454400318751,0.168584690078102,0.723033089650446,0.330881918197182,1.08939722046203,0.949082476444386,0.539325232640658,0.392442930250692,0,0,0,0.4115740113314,1.47008711385542,5.07020139287323,13.7595810334868,1.18157981336281,0,0,1.54411029268673,0.219500570817251,0,0,0.185176890317059,2.93227474779292,9.35941306751621,0,3.13012093432707,1.76113041353732,0.577465791044295,0,0.380508304469197,0,0,0,0,0,0.93733833986777,0.503946384596579,0.141775097242386,1.16426079513703,0,0.383382679165211,0,0,0.829312462163088,0.576479813667846,0.37872730027914,0.571481048629521,0,0,6.84289784090821,1.33675740514321,0,0.285826432630578,1.00917975910825,0.87192013766656,4.18028229179415,8.91974838728667,46.4953379607447,14.370146793452,3.45719551560332,3.12022310734098,9.25946547343712,7.09245660116391,7.19339883343468,2.43062589218851,49.9211876960128,9.05564370458846,15.6353368460993,1.42156779497018,8.71147060226772,4.22015127883421,2.61460037580088,3.29910870900788,0,0,0,5.27174682081482,3.44585807502342,18.5427976552934,11.8720671467415,72.7386181828357,13.2505112797523,0,0,0,0,1.27047312111232,2.60279707715243,0,0.837581326671744,0,0,0,0,149.929002880789,170.55814768135,120.170405498983,25.3724451067585,21.0546206780651,19.23969463414,43.3423235473039,64.1015192420041,18.1926003244788,37.2503056653018,11.9560607736379,7.92787424729324,26.9339204851057,1.76221041716467,2.40200396667599,0,0,0.213455115606889,0,8.32177197552485,3.0239029332968,7.19512642674453,15.1927353555182,11.507063871756,5.38184426873944,15.3512174720011,2.41280881715411,2.96836132889982,2.46735510084249,2.13074070375753,12.9760906501818,3.11552657510173,4.18357362455853,0,0.200506470303285,0,6.65923799354719,2.36718518408732,5.76947425821466,0,0.231046011313244,0,0,0.73886140225013,0,0.170093705276516,0,0,0,0,0.509752546090077,2.49322802678617,0.223874754722178,0,0,0.769350375349168,0.328014645699706,0,3.40035338437484,0.366277859273374,0.165018999841176,1.14853107599234,0,14.4615536859744,16.9173757011213,24.3396815041138,24.4070842814546,5.51346289938122,75.5164321423964,49.3056759308377,11.5055947011736,27.2438029079016,0,0,0,0,2.78907329578371,22.3516766249754,4.1822236209636,7.08477234405004,2.12922412126809,1.73986598415015,2.7798632865588,4.15062171551775,5.21021717103534,4.11293252134344,1.71567174531442,0.511795582622668,31.6674851145101,20.046804619334,3.92474320099615,7.19489830333259,6.86342574340137,4.59468369148177,3.43710218674637,4.75530963519025,2.52755073743389,0.48763373908959,10.9671070334078,2.11300293513511,3.00299805097569,9.75697480480618,36.1625973184777,10.4759415273764,8.624706678135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| ||
|short_description=p1@PTGFR | |||
}} | }} |
Latest revision as of 08:38, 19 September 2015
Short description: | p1@PTGFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTGFR_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_000959, NM_001039585, uc001dim.2, uc001din.2_5end |
EntrezGene: | PTGFR |
HGNC: | 9600 |
UniProt: | P43088 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.92e-21 | 76 |
skin fibroblast | 1.42e-13 | 23 |
muscle precursor cell | 6.68e-13 | 58 |
myoblast | 6.68e-13 | 58 |
multi-potent skeletal muscle stem cell | 6.68e-13 | 58 |
muscle cell | 1.50e-11 | 55 |
electrically responsive cell | 7.35e-09 | 61 |
electrically active cell | 7.35e-09 | 61 |
smooth muscle cell | 2.70e-08 | 43 |
smooth muscle myoblast | 2.70e-08 | 43 |
vascular associated smooth muscle cell | 6.45e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.55e-17 | 73 |
somite | 2.85e-17 | 71 |
presomitic mesoderm | 2.85e-17 | 71 |
presumptive segmental plate | 2.85e-17 | 71 |
dermomyotome | 2.85e-17 | 71 |
trunk paraxial mesoderm | 2.85e-17 | 71 |
paraxial mesoderm | 1.06e-16 | 72 |
presumptive paraxial mesoderm | 1.06e-16 | 72 |
surface structure | 3.66e-14 | 99 |
multilaminar epithelium | 4.77e-14 | 83 |
muscle tissue | 8.17e-14 | 64 |
musculature | 8.17e-14 | 64 |
musculature of body | 8.17e-14 | 64 |
epithelial vesicle | 1.20e-13 | 78 |
skeletal muscle tissue | 3.40e-13 | 62 |
striated muscle tissue | 3.40e-13 | 62 |
myotome | 3.40e-13 | 62 |
mesenchyme | 4.71e-13 | 160 |
entire embryonic mesenchyme | 4.71e-13 | 160 |
trunk mesenchyme | 1.69e-11 | 122 |
integument | 3.10e-11 | 46 |
integumental system | 3.10e-11 | 46 |
skin of body | 7.69e-11 | 41 |
articulation | 3.70e-07 | 8 |
skeletal joint | 3.70e-07 | 8 |
articular system | 3.70e-07 | 8 |
trunk | 6.13e-07 | 199 |