FFCP PHASE1:Hg19::chr1:53608270..53608288,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6512 | |EntrezGene=6512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10945 | |HGNC=10945 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BW45,O00341 | |UniProt=Q9BW45,O00341 | ||
|association_with_transcript=0bp_to_ENST00000371491,NM_006671,uc001cuy.2,uc001cuz.3_5end | |||
|cluster_id=chr1:53608270..53608288,- | |||
|coexpression_cluster_id=C87 | |||
|description=CAGE_peak_3_at_SLC1A7_5end | |||
|id=chr1:53608270..53608288,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000306;1.70e-09;4!CL:0002222;1.70e-09;4!CL:0002224;1.70e-09;4!CL:0000243;8.55e-09;15!CL:0000125;8.55e-09;15!CL:0000095;5.73e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.70e-09,4;CL:0002222,1.70e-09,4;CL:0002224,1.70e-09,4;CL:0000243,8.55e-09,15;CL:0000125,8.55e-09,15;CL:0000030,8.55e-09,15;CL:0000339,8.55e-09,15;CL:0000095,5.73e-08,17;CL:0000123,5.73e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.25e-45;3!UBERON:0006238;4.80e-13;10!CL:0000339;8.55e-09;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;4.80e-12;11!DOID:5409;1.44e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,4.80e-12,11;DOID:5409,1.44e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0001905!2.97e-24!2;UBERON:0002757!2.97e-24!2;UBERON:0010134!2.97e-24!2;UBERON:0002784!2.97e-24!2;UBERON:0005408!2.97e-24!2;UBERON:0001899!2.97e-24!2;UBERON:0000966!3.33e-22!5;UBERON:0005388!3.33e-22!5;UBERON:0001802!3.33e-22!5;UBERON:0000970!4.51e-21!20;UBERON:0002104!4.68e-20!21;UBERON:0000020!2.74e-18!23;UBERON:0001032!1.63e-17!24;UBERON:0004456!1.63e-17!24;UBERON:0001894!1.18e-15!7;UBERON:0006222!1.18e-15!7;UBERON:0000019!1.42e-15!19;UBERON:0000047!1.42e-15!19;UBERON:0004088!1.42e-15!19;UBERON:0003072!1.42e-15!19;UBERON:0003071!1.42e-15!19;UBERON:0004128!1.42e-15!19;UBERON:0003075!8.08e-15!86;UBERON:0007284!8.08e-15!86;UBERON:0003056!2.83e-14!61;UBERON:0002346!4.18e-14!90;UBERON:0001456!4.35e-14!21;UBERON:0002336!1.09e-12!1;UBERON:0001018!1.09e-12!1;UBERON:0002473!1.09e-12!1;UBERON:0005340!1.09e-12!1;UBERON:0002316!1.09e-12!1;UBERON:0003544!1.09e-12!1;UBERON:0001020!1.09e-12!1;UBERON:0005970!1.09e-12!1;UBERON:0002437!1.09e-12!1;UBERON:0003296!1.23e-12!4;UBERON:0010133!1.23e-12!4;UBERON:0005743!4.72e-12!86;UBERON:0000073!8.15e-11!94;UBERON:0001016!8.15e-11!94;UBERON:0007625!3.34e-10!11;UBERON:0005085!3.50e-10!29;UBERON:0000033!6.71e-10!123;UBERON:0000153!2.23e-09!129;UBERON:0007811!2.23e-09!129;UBERON:0004121!3.46e-08!169;UBERON:0001017!4.82e-08!82;UBERON:0000924!5.80e-08!173;UBERON:0006601!5.80e-08!173;UBERON:0000955!1.86e-07!69;UBERON:0006238!1.86e-07!69;UBERON:0001897!3.28e-07!2;UBERON:0002360!4.17e-07!2;UBERON:0000094!4.17e-07!2;UBERON:0007645!4.17e-07!2;UBERON:0003127!4.98e-07!2;UBERON:0005162!5.60e-07!2;UBERON:0000122!5.60e-07!2;UBERON:0000063!6.71e-07!97 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.82e-27;5!UBERON:0005388;1.82e-27;5!UBERON:0001802;1.82e-27;5!UBERON:0000970;6.34e-27;20!UBERON:0002104;1.12e-25;21!UBERON:0000020;1.64e-23;23!UBERON:0001032;1.46e-22;24!UBERON:0004456;1.46e-22;24!UBERON:0000019;2.16e-16;19!UBERON:0000047;2.16e-16;19!UBERON:0004088;2.16e-16;19!UBERON:0010230;2.16e-16;19!UBERON:0001456;6.53e-15;21!UBERON:0010077;1.70e-09;4!UBERON:0005389;1.70e-09;4!UBERON:0000484;1.70e-09;4!UBERON:0000965;1.70e-09;4!UBERON:0001803;1.70e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.12e-25,21;UBERON:0002104,1.12e-25,21;UBERON:0000966,4.34e-23,6;UBERON:0005388,4.34e-23,6;UBERON:0001802,4.34e-23,6;UBERON:0000020,1.46e-22,24;UBERON:0001032,1.46e-22,24;UBERON:0004456,1.46e-22,24;UBERON:0000019,1.29e-15,20;UBERON:0000047,1.29e-15,20;UBERON:0010312,1.29e-15,20;UBERON:0004088,1.29e-15,20;UBERON:0010230,1.29e-15,20;UBERON:0003072,1.29e-15,20;UBERON:0004128,1.29e-15,20;UBERON:0003071,1.29e-15,20;UBERON:0001456,2.85e-14,22;UBERON:0005085,2.36e-10,31;UBERON:0010077,1.70e-09,4;UBERON:0005389,1.70e-09,4;UBERON:0000484,1.70e-09,4;UBERON:0002546,1.70e-09,4;UBERON:0000965,1.70e-09,4;UBERON:0001803,1.70e-09,4;UBERON:0003073,1.70e-09,4;UBERON:0005426,1.70e-09,4;UBERON:0001444,8.40e-07,49 | |||
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|short_description=p3@SLC1A7 | |||
}} | }} |
Latest revision as of 13:30, 18 September 2015
Short description: | p3@SLC1A7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC1A7_5end |
Coexpression cluster: | C87_retinoblastoma_left_nonsmall_heart_small_diaphragm_bronchogenic |
Association with transcript: | 0bp_to_ENST00000371491, NM_006671, uc001cuy.2, uc001cuz.3_5end |
EntrezGene: | SLC1A7 |
HGNC: | 10945 |
UniProt: | Q9BW45O00341 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.70e-09 | 4 |
vertebrate lens cell | 1.70e-09 | 4 |
lens epithelial cell | 1.70e-09 | 4 |
glial cell (sensu Vertebrata) | 8.55e-09 | 15 |
glial cell | 8.55e-09 | 15 |
glioblast | 8.55e-09 | 15 |
glioblast (sensu Vertebrata) | 8.55e-09 | 15 |
neuron associated cell | 5.73e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.73e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
eye | 1.12e-25 | 21 |
visual system | 1.12e-25 | 21 |
retina | 4.34e-23 | 6 |
photoreceptor array | 4.34e-23 | 6 |
posterior segment of eyeball | 4.34e-23 | 6 |
sense organ | 1.46e-22 | 24 |
sensory system | 1.46e-22 | 24 |
entire sense organ system | 1.46e-22 | 24 |
camera-type eye | 1.29e-15 | 20 |
simple eye | 1.29e-15 | 20 |
immature eye | 1.29e-15 | 20 |
ocular region | 1.29e-15 | 20 |
eyeball of camera-type eye | 1.29e-15 | 20 |
optic cup | 1.29e-15 | 20 |
optic vesicle | 1.29e-15 | 20 |
eye primordium | 1.29e-15 | 20 |
face | 2.85e-14 | 22 |
ectodermal placode | 2.36e-10 | 31 |
cuboidal epithelium | 1.70e-09 | 4 |
transparent eye structure | 1.70e-09 | 4 |
simple cuboidal epithelium | 1.70e-09 | 4 |
cranial placode | 1.70e-09 | 4 |
lens of camera-type eye | 1.70e-09 | 4 |
epithelium of lens | 1.70e-09 | 4 |
lens placode | 1.70e-09 | 4 |
lens vesicle | 1.70e-09 | 4 |
subdivision of head | 8.40e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 4.80e-12 | 11 |
lung small cell carcinoma | 1.44e-09 | 4 |