FFCP PHASE1:Hg19::chr1:31899590..31899619,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:31899590..31899619,+ to FFCP PHASE1:Hg19::chr1:31899590..31899619,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:31899590..31899619,+ | |||
|coexpression_cluster_id=C1475 | |||
|description=CAGE_peak_at_chr1:31899590..31899619,+ | |||
|id=chr1:31899590..31899619,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.33e-18!254;CL:0000220!1.76e-14!246;CL:0002321!2.64e-14!248;CL:0000548!5.32e-13!679;CL:0000004!5.32e-13!679;CL:0000255!5.32e-13!679;CL:0000012!2.65e-12!682;CL:0002076!1.66e-11!43;CL:0000223!2.35e-11!59;CL:0002371!2.86e-10!591;CL:0002077!8.04e-10!33;CL:0000144!5.60e-09!625;CL:0000063!2.37e-08!578;CL:0002368!3.17e-08!13;CL:0002159!3.71e-08!13;CL:0000055!5.93e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.53e-11;42!CL:0002368;8.40e-11;13!CL:0002159;1.10e-09;14!CL:0002077;2.76e-08;34!CL:0002202;2.68e-07;9!CL:0002632;2.68e-07;9!CL:0000362;3.86e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.61e-15,253;CL:0002076,1.70e-14,42;CL:0002321,1.29e-11,250;CL:0000223,2.36e-11,58;CL:0002368,6.18e-11,13;CL:0002159,1.21e-09,14;CL:0002077,1.52e-09,34;CL:0002202,1.97e-07,9;CL:0002632,1.97e-07,9;CL:0000362,4.12e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!6.99e-18!169;UBERON:0000925!6.99e-18!169;UBERON:0006595!6.99e-18!169;UBERON:0003102!1.56e-15!95;UBERON:0002100!3.37e-14!216;UBERON:0001007!1.37e-13!155;UBERON:0001555!1.37e-13!155;UBERON:0007026!1.37e-13!155;UBERON:0003104!5.71e-13!238;UBERON:0009142!5.71e-13!238;UBERON:0005256!3.75e-12!143;UBERON:0000475!2.71e-11!365;UBERON:0001004!1.24e-10!72;UBERON:0000468!1.56e-10!659;UBERON:0000467!1.45e-09!625;UBERON:0000480!2.27e-09!626;UBERON:0000481!3.24e-09!347;UBERON:0000161!5.83e-09!35;UBERON:0000165!6.53e-09!28;UBERON:0000930!6.53e-09!28;UBERON:0001444!1.27e-08!48;UBERON:0006554!1.37e-08!44;UBERON:0004921!1.56e-08!129;UBERON:0004185!1.56e-08!129;UBERON:0000922!3.09e-08!612;UBERON:0001008!4.86e-08!45;UBERON:0000466!6.54e-08!126;UBERON:0002050!9.47e-08!605;UBERON:0005423!9.47e-08!605;UBERON:0000923!1.02e-07!604;UBERON:0005291!1.02e-07!604;UBERON:0006598!1.02e-07!604;UBERON:0002532!1.02e-07!604;UBERON:0009569!1.05e-07!113;UBERON:0000077!1.13e-07!130;UBERON:0000464!1.36e-07!104;UBERON:0000914!4.06e-07!83;UBERON:0002329!4.06e-07!83;UBERON:0003077!4.06e-07!83;UBERON:0003059!4.06e-07!83;UBERON:0007282!4.06e-07!83;UBERON:0009618!4.06e-07!83;UBERON:0007285!4.06e-07!83;UBERON:0000486!5.11e-07!82;UBERON:0007196!9.53e-07!14;UBERON:0001558!9.53e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;7.86e-12;28!UBERON:0003729;1.79e-09;13!UBERON:0000161;1.82e-09;19!UBERON:0000166;1.82e-09;19!UBERON:0000344;5.14e-08;20!UBERON:0001555;1.70e-07;54!UBERON:0001828;2.66e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.01e-16,160;UBERON:0000925,1.01e-16,160;UBERON:0006595,1.01e-16,160;UBERON:0003102,1.73e-16,99;UBERON:0001007,2.40e-12,145;UBERON:0001555,2.40e-12,145;UBERON:0007026,2.40e-12,145;UBERON:0000165,1.72e-11,29;UBERON:0000930,1.72e-11,29;UBERON:0001004,1.29e-10,74;UBERON:0000161,4.63e-10,36;UBERON:0003729,1.47e-09,13;UBERON:0000033,3.92e-09,56;UBERON:0001444,3.95e-09,49;UBERON:0000166,1.71e-08,22;UBERON:0002100,1.85e-08,199;UBERON:0000344,5.44e-08,20;UBERON:0000153,5.81e-08,62;UBERON:0007811,5.81e-08,62;UBERON:0006554,8.27e-08,47;UBERON:0001008,1.79e-07,48;UBERON:0001828,1.91e-07,8;UBERON:0004921,2.53e-07,118;UBERON:0004923,4.24e-07,66 | |||
|phase1_expression=2.54349730978779,4.06790995392868,3.10099689011137,0,3.12872766099101,3.48935409640147,7.59899634504932,0.631719873426831,0.522371256399677,1.72013755551056,9.07141518364156,0.873765488520689,2.37390280405608,1.36142988256051,1.65698687863958,3.36162573225888,1.80808358407193,0.730310090387373,0.975865597581014,0,0.612002073732759,0,0,0,0.125542639594803,0.840547463227464,0.410502947249729,0.787107813136792,0,0,0,9.19421224478927,10.843413076017,28.1013047726759,0.697204805222715,0,0,0,0.401088894940283,0,0,0,0,0.726991193897824,1.13362783106643,0.970336244751265,0.697287110717054,0.411167888021826,0.309706370895104,0,0.512321413058201,0.236482229888585,0,0,0,1.31769637679823,0.545812300115692,0.224723484445085,0.918251677112708,0.641858054152187,0,0.659702600373432,0,0,0.290209238628584,0,0,0.502497330513487,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0.150176892841506,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,0,0.434539556882471,0.795285947051099,0,1.51255707462509,1.77383517970051,0.614843499851882,0.851363990735132,7.28590576585084,8.89882662682631,0.324547393654683,0.174129737299267,0.398873881556595,0.238490624305342,0,0,0,0.860234595106124,0,0,1.67799774483962,0.825354125820202,0,0.516833518338658,0,0,0.805658634218294,0,0.24406205754817,0.367663080345869,3.24056779152704,0.446498641420399,0,0.112611480483322,0,0.949265659568129,0.183201743930407,0,0,7.41359888642308,1.98788780678127,0.506522046658319,0.529636723252875,0.286836620748814,1.41867352879343,0,0,0.98667019366864,0,0.538842688278752,0.326923806226917,0.302714855289863,0,0.468642863667593,8.42832207441865,0.570471821544449,1.64393548606981,1.87895197830024,0.323745888736263,0.561803226808994,2.85815839756851,4.66770405784718,4.44300859055791,2.37600571456411,2.47266929278557,1.82032272387605,11.4978902690598,1.85169725349473,6.13080747372624,2.49357703935765,1.75591048352335,3.67785354958824,0.300476117813194,0.113432183160021,1.25572744982203,0.213557388818567,0,1.50045548042201,1.03052529238439,0,0.744467425326359,0.337552664482532,0.876933046450788,0,0.460249493211497,1.45481451136931,0.710019185033229,0.403008392910561,1.3564847384839,5.9910864480622,6.81865301477087,2.86804595389004,0.853815942907168,0,1.04574548582567,1.86589899027667,0.252320850875628,0,1.56449532329816,1.92972281457866,1.38134921352481,5.57241513638375,2.88751792667834,2.01121560067735,1.68584690078102,2.41011029883482,1.32352767278873,2.17879444092406,0.949082476444386,1.21348177344148,0.588664395376038,3.46272441251751,0.738155454624648,1.40241773803446,0.8231480226628,0,6.33775174109154,6.87979051674338,1.18157981336281,0,1.10689594688802,0.686271241194102,15.0357891009817,3.37205259772859,9.14813648945841,5.46271826435325,0.325808305310325,1.03993478527958,1.44331342025273,0.695582429850461,0,0.721832238805369,0,1.52203321787679,0,0,0.492434012174795,0,0.297262324577456,0.93733833986777,7.0552493843521,6.66342957039216,2.4180801129769,6.1033127087932,16.1020725249389,0,0.088048434013226,0.207328115540772,0.288239906833923,0,0.126995788584338,0.381988425558278,1.17217447210047,1.71072446022705,0.411309970813294,0.600686115687835,0.285826432630578,0.336393253036082,0.43596006883328,0.4400297149257,0.387815147273333,0,0.845302752556,0.26593811658487,3.12022310734098,2.82928111688356,0,3.72991050622539,0.285955987316295,1.08524321078289,0.823240336780769,0.325736184293735,0.710783897485092,0.791951872933429,1.20575750823834,1.74306691720059,0.99972991182057,3.64871341923571,1.00451418286425,2.10833939483032,0,0,0,1.44781306667579,2.05476322550383,0.716243852959582,0,0,0,0,1.01637849688985,1.30139853857622,0,0,0,0,0,0.414415513436035,0.12269149171914,2.00068208423871,1.08506009479894,1.03985430765404,3.92543775353756,1.57702415033935,0.702848489956279,0.300946099727719,9.09630016223939,3.10419213877515,0,0.368738337083406,1.56390506042549,0.587403472388222,2.05886054286514,0.206768026122887,0.215714200818617,0.106727557803444,0.909382714338778,1.66435439510497,3.0239029332968,2.97729369382532,0.460385919864187,4.77122160536225,3.84417447767103,1.02341449813341,2.89537058058494,10.3892646511494,2.46735510084249,1.24293207719189,0.492762936082855,23.366449313263,0.697262270759755,1.32945394550784,27.8703993721566,15.5616871301665,1.37777337797528,7.28364672026868,5.37610101333639,1.35359883872224,2.6185214615501,0.784349769176855,0,1.47772280450026,2.27466768141793,0.510281115829547,0.647747748306418,3.08454505380579,0.541892875087706,3.51182841698397,1.27438136522519,4.15538004464362,1.11937377361089,0,0,0.769350375349168,0,0.650756789328606,0.824328093181778,0.183138929636687,0.165018999841176,9.18824860793876,35.1032532859721,1.6068392984416,0.48335359146061,0.616194468458578,0.15350367472613,1.7918754422989,0.966782203814463,2.0302337147992,0.596586391912706,0.534192213880424,10.7435194984636,14.7986351871132,2.4246415373971,1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|phase1_expression=2.54349730978779,4.06790995392868,3.10099689011137,0,3.12872766099101,3.48935409640147,7.59899634504932,0.631719873426831,0.522371256399677,1.72013755551056,9.07141518364156,0.873765488520689,2.37390280405608,1.36142988256051,1.65698687863958,3.36162573225888,1.80808358407193,0.730310090387373,0.975865597581014,0,0.612002073732759,0,0,0,0.125542639594803,0.840547463227464,0.410502947249729,0.787107813136792,0,0,0,9.19421224478927,10.843413076017,28.1013047726759,0.697204805222715,0,0,0,0.401088894940283,0,0,0,0,0.726991193897824,1.13362783106643,0.970336244751265,0.697287110717054,0.411167888021826,0.309706370895104,0,0.512321413058201,0.236482229888585,0,0,0,1.31769637679823,0.545812300115692,0.224723484445085,0.918251677112708,0.641858054152187,0,0.659702600373432,0,0,0.290209238628584,0,0,0.502497330513487,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0.150176892841506,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.722878304769133,0,0.434539556882471,0.795285947051099,0,1.51255707462509,1.77383517970051,0.614843499851882,0.851363990735132,7.28590576585084,8.89882662682631,0.324547393654683,0.174129737299267,0.398873881556595,0.238490624305342,0,0,0,0.860234595106124,0,0,1.67799774483962,0.825354125820202,0,0.516833518338658,0,0,0.805658634218294,0,0.24406205754817,0.367663080345869,3.24056779152704,0.446498641420399,0,0.112611480483322,0,0.949265659568129,0.183201743930407,0,0,7.41359888642308,1.98788780678127,0.506522046658319,0.529636723252875,0.286836620748814,1.41867352879343,0,0,0.98667019366864,0,0.538842688278752,0.326923806226917,0.302714855289863,0,0.468642863667593,8.42832207441865,0.570471821544449,1.64393548606981,1.87895197830024,0.323745888736263,0.561803226808994,2.85815839756851,4.66770405784718,4.44300859055791,2.37600571456411,2.47266929278557,1.82032272387605,11.4978902690598,1.85169725349473,6.13080747372624,2.49357703935765,1.75591048352335,3.67785354958824,0.300476117813194,0.113432183160021,1.25572744982203,0.213557388818567,0,1.50045548042201,1.03052529238439,0,0.744467425326359,0.337552664482532,0.876933046450788,0,0.460249493211497,1.45481451136931,0.710019185033229,0.403008392910561,1.3564847384839,5.9910864480622,6.81865301477087,2.86804595389004,0.853815942907168,0,1.04574548582567,1.86589899027667,0.252320850875628,0,1.56449532329816,1.92972281457866,1.38134921352481,5.57241513638375,2.88751792667834,2.01121560067735,1.68584690078102,2.41011029883482,1.32352767278873,2.17879444092406,0.949082476444386,1.21348177344148,0.588664395376038,3.46272441251751,0.738155454624648,1.40241773803446,0.8231480226628,0,6.33775174109154,6.87979051674338,1.18157981336281,0,1.10689594688802,0.686271241194102,15.0357891009817,3.37205259772859,9.14813648945841,5.46271826435325,0.325808305310325,1.03993478527958,1.44331342025273,0.695582429850461,0,0.721832238805369,0,1.52203321787679,0,0,0.492434012174795,0,0.297262324577456,0.93733833986777,7.0552493843521,6.66342957039216,2.4180801129769,6.1033127087932,16.1020725249389,0,0.088048434013226,0.207328115540772,0.288239906833923,0,0.126995788584338,0.381988425558278,1.17217447210047,1.71072446022705,0.411309970813294,0.600686115687835,0.285826432630578,0.336393253036082,0.43596006883328,0.4400297149257,0.387815147273333,0,0.845302752556,0.26593811658487,3.12022310734098,2.82928111688356,0,3.72991050622539,0.285955987316295,1.08524321078289,0.823240336780769,0.325736184293735,0.710783897485092,0.791951872933429,1.20575750823834,1.74306691720059,0.99972991182057,3.64871341923571,1.00451418286425,2.10833939483032,0,0,0,1.44781306667579,2.05476322550383,0.716243852959582,0,0,0,0,1.01637849688985,1.30139853857622,0,0,0,0,0,0.414415513436035,0.12269149171914,2.00068208423871,1.08506009479894,1.03985430765404,3.92543775353756,1.57702415033935,0.702848489956279,0.300946099727719,9.09630016223939,3.10419213877515,0,0.368738337083406,1.56390506042549,0.587403472388222,2.05886054286514,0.206768026122887,0.215714200818617,0.106727557803444,0.909382714338778,1.66435439510497,3.0239029332968,2.97729369382532,0.460385919864187,4.77122160536225,3.84417447767103,1.02341449813341,2.89537058058494,10.3892646511494,2.46735510084249,1.24293207719189,0.492762936082855,23.366449313263,0.697262270759755,1.32945394550784,27.8703993721566,15.5616871301665,1.37777337797528,7.28364672026868,5.37610101333639,1.35359883872224,2.6185214615501,0.784349769176855,0,1.47772280450026,2.27466768141793,0.510281115829547,0.647747748306418,3.08454505380579,0.541892875087706,3.51182841698397,1.27438136522519,4.15538004464362,1.11937377361089,0,0,0.769350375349168,0,0.650756789328606,0.824328093181778,0.183138929636687,0.165018999841176,9.18824860793876,35.1032532859721,1.6068392984416,0.48335359146061,0.616194468458578,0.15350367472613,1.7918754422989,0.966782203814463,2.0302337147992,0.596586391912706,0.534192213880424,10.7435194984636,14.7986351871132,2.4246415373971,1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| ||
|short_description=p@chr1:31899590..31899619,+ | |||
}} | }} |
Latest revision as of 07:11, 28 July 2015
Short description: | p@chr1:31899590..31899619, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:31899590..31899619, + |
Coexpression cluster: | C1475_Sebocyte_Prostate_Tracheal_Bronchial_Preadipocyte_Urothelial_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.61e-15 | 253 |
endo-epithelial cell | 1.70e-14 | 42 |
embryonic cell | 1.29e-11 | 250 |
endodermal cell | 2.36e-11 | 58 |
respiratory epithelial cell | 6.18e-11 | 13 |
general ecto-epithelial cell | 1.21e-09 | 14 |
ecto-epithelial cell | 1.52e-09 | 34 |
epithelial cell of tracheobronchial tree | 1.97e-07 | 9 |
epithelial cell of lower respiratory tract | 1.97e-07 | 9 |
epidermal cell | 4.12e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.01e-16 | 160 |
endoderm | 1.01e-16 | 160 |
presumptive endoderm | 1.01e-16 | 160 |
surface structure | 1.73e-16 | 99 |
digestive system | 2.40e-12 | 145 |
digestive tract | 2.40e-12 | 145 |
primitive gut | 2.40e-12 | 145 |
mouth | 1.72e-11 | 29 |
stomodeum | 1.72e-11 | 29 |
respiratory system | 1.29e-10 | 74 |
orifice | 4.63e-10 | 36 |
mouth mucosa | 1.47e-09 | 13 |
head | 3.92e-09 | 56 |
subdivision of head | 3.95e-09 | 49 |
oral opening | 1.71e-08 | 22 |
trunk | 1.85e-08 | 199 |
mucosa | 5.44e-08 | 20 |
anterior region of body | 5.81e-08 | 62 |
craniocervical region | 5.81e-08 | 62 |
urinary system structure | 8.27e-08 | 47 |
renal system | 1.79e-07 | 48 |
gingiva | 1.91e-07 | 8 |
subdivision of digestive tract | 2.53e-07 | 118 |
organ component layer | 4.24e-07 | 66 |