FFCP PHASE1:Hg19::chr1:31898174..31898188,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:31898174..31898188,+ to FFCP PHASE1:Hg19::chr1:31898174..31898188,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:31898174..31898188,+ | |||
|coexpression_cluster_id=C1475 | |||
|description=CAGE_peak_at_chr1:31898174..31898188,+ | |||
|id=chr1:31898174..31898188,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.25e-14!254;CL:0000223!1.64e-11!59;CL:0002076!1.68e-11!43;CL:0000220!1.16e-10!246;CL:0002321!1.28e-10!248;CL:0000548!9.66e-08!679;CL:0000004!9.66e-08!679;CL:0000255!9.66e-08!679;CL:0002368!1.54e-07!13;CL:0002077!2.11e-07!33;CL:0000012!2.45e-07!682;CL:0002371!3.92e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002159;3.11e-15;14!CL:0002076;1.55e-12;42!CL:0002368;2.63e-12;13!CL:0000362;2.35e-10;9!CL:0000244;2.93e-09;4!CL:0000731;2.93e-09;4!CL:0002077;1.71e-08;34!CL:0002202;2.29e-08;9!CL:0002632;2.29e-08;9!CL:0002327;5.76e-08;4!CL:0002328;1.81e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.83e-17,42;CL:0000223,1.14e-15,58;CL:0002159,1.60e-15,14;CL:0000066,2.40e-13,253;CL:0002368,2.34e-12,13;CL:0000362,1.25e-10,9;CL:0002077,1.59e-09,34;CL:0000244,2.69e-09,4;CL:0000731,2.69e-09,4;CL:0002202,2.09e-08,9;CL:0002632,2.09e-08,9;CL:0002327,7.65e-08,4;CL:0002328,1.84e-07,3;CL:0002321,2.67e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;6.73e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.10e-14!169;UBERON:0000925!2.10e-14!169;UBERON:0006595!2.10e-14!169;UBERON:0003102!1.95e-13!95;UBERON:0003104!2.18e-12!238;UBERON:0009142!2.18e-12!238;UBERON:0001007!2.18e-11!155;UBERON:0001555!2.18e-11!155;UBERON:0007026!2.18e-11!155;UBERON:0000468!3.38e-11!659;UBERON:0000481!1.08e-10!347;UBERON:0000161!2.19e-10!35;UBERON:0002100!6.05e-10!216;UBERON:0000475!9.49e-10!365;UBERON:0001008!1.40e-09!45;UBERON:0006554!2.95e-09!44;UBERON:0000467!5.96e-09!625;UBERON:0005256!7.25e-09!143;UBERON:0000922!7.96e-09!612;UBERON:0000480!8.27e-09!626;UBERON:0001444!8.58e-09!48;UBERON:0000923!9.63e-09!604;UBERON:0005291!9.63e-09!604;UBERON:0006598!9.63e-09!604;UBERON:0002532!9.63e-09!604;UBERON:0002050!1.33e-08!605;UBERON:0005423!1.33e-08!605;UBERON:0001004!3.10e-08!72;UBERON:0000165!1.07e-07!28;UBERON:0000930!1.07e-07!28;UBERON:0004921!2.50e-07!129;UBERON:0004185!2.50e-07!129;UBERON:0000166!5.03e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.39e-10;5!UBERON:0003729;6.45e-10;13!UBERON:0000165;1.55e-09;28!UBERON:0000486;1.81e-09;12!UBERON:0000161;1.95e-09;19!UBERON:0000166;1.95e-09;19!UBERON:0005910;1.01e-08;6!UBERON:0001911;5.76e-08;4!UBERON:0001828;1.03e-07;8!UBERON:0004815;1.81e-07;3!UBERON:0002031;1.81e-07;3!UBERON:0005911;2.88e-07;36!UBERON:0000344;3.63e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,6.94e-13,99;UBERON:0004119,8.85e-12,160;UBERON:0000925,8.85e-12,160;UBERON:0006595,8.85e-12,160;UBERON:0000161,4.92e-11,36;UBERON:0000165,8.47e-11,29;UBERON:0000930,8.47e-11,29;UBERON:0000365,1.13e-10,5;UBERON:0003729,2.60e-10,13;UBERON:0000033,3.99e-10,56;UBERON:0001444,7.91e-10,49;UBERON:0000166,1.30e-09,22;UBERON:0000153,1.62e-09,62;UBERON:0007811,1.62e-09,62;UBERON:0005910,8.59e-09,6;UBERON:0001004,1.12e-08,74;UBERON:0001007,3.05e-08,145;UBERON:0001555,3.05e-08,145;UBERON:0007026,3.05e-08,145;UBERON:0001828,3.13e-08,8;UBERON:0001911,7.65e-08,4;UBERON:0005333,7.65e-08,4;UBERON:0008425,7.65e-08,4;UBERON:0005311,7.65e-08,4;UBERON:0005157,1.08e-07,47;UBERON:0005085,1.57e-07,31;UBERON:0004815,1.84e-07,3;UBERON:0002031,1.84e-07,3;UBERON:0000344,1.88e-07,20;UBERON:0005153,4.09e-07,37 | |||
|phase1_expression=0.54503513781167,4.06790995392868,0.422863212287913,0,0.446961094427288,0.872338524100369,0,0,0.261185628199839,0.491467873003018,6.28021051175185,0.218441372130172,1.05506791291381,0.247532705920093,0,0.672325146451775,0,0,0.487932798790507,0,0.204000691244253,0,0,0.136874425072884,0,0.152826811495903,0.246301768349837,0.0787107813136792,0,0,0,5.51652734687356,5.4217065380085,8.50434223383612,0.0774672005803016,0,0,0,0,0,0,0,0,1.01778767145695,0.377875943688809,0,0,0,0.309706370895104,0.28769239232215,0,0.236482229888585,0,0,0,0.188242339542605,0.272906150057846,0,0.306083892370903,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0.283604451492204,1.55210578223795,0.263504357079378,0.0654895377488563,2.18577172975525,2.22470665670658,0.324547393654683,0,0.132957960518865,0,0,0,0,0,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,1.22031028774085,0,0,0,0,0.112611480483322,1.53316637465883,0,0.183201743930407,0,0,2.18047026071267,0.496971951695318,0,0,0.286836620748814,0,0.560677600142307,0,0.24666754841716,0,0,0,0.151357427644931,0,0,2.49728061464256,0,0.597794722207204,0.469737994575059,0.485618833104395,0.280901613404497,1.63323337003915,2.57952066354713,1.75653827998801,0,0.741800787835671,0,2.87447256726495,0.168336113954066,3.00284447692714,0,0,1.5324389789951,0.751190294532984,0.113432183160021,0.358779271377724,0.213557388818567,0.211931901159562,0.600182192168805,0.309157587715317,0,0.18611685633159,0,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0.355009592516614,0.201504196455281,0.169560592310488,1.93260853163297,3.27295344709002,1.72082757233402,0.365921118388786,0,0.232387885739037,0.310983165046111,0.504641701751257,0,0,0.643240938192885,0,1.85747171212792,4.33127689001751,0.236613600079688,0.505754070234305,0.241011029883482,0.661763836394364,0.217879444092406,0.237270619111097,0.674156540800822,0.98110732562673,0.38474715694639,0.738155454624648,1.40241773803446,0,0,1.26755034821831,1.96565443335525,0,0,0.368965315629341,0.686271241194102,3.40225884766739,0,3.82010095164197,1.29623823221941,0.977424915930974,0,1.44331342025273,0.115930404975077,0.117408694235822,0.144366447761074,0,0.190254152234598,0,0,0,0.234004265139238,0.297262324577456,0,3.86358894857377,1.41775097242386,1.25381931783988,2.61570544662566,6.13412286664338,0,0,0,0.144119953416961,0,0.126995788584338,0,0,0,0,0.300343057843917,0,0,0,0,0.517086863031111,0,2.535908257668,0.26593811658487,1.04007436911366,0.257207374262142,0,1.0656887160644,0,0.542621605391443,0.823240336780769,0.325736184293735,0,0.791951872933429,0.301439377059586,0,0.599837947092342,0,0.502257091432126,0,0,1.14861935834114,0,0.579125226670317,0.61642896765115,0.179060963239896,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0,1.00034104211935,0.542530047399471,0.415941723061614,2.14114786556594,0.946214490203608,0.35142424497814,0,0,0,0,0,0.868836144680828,0.195801157462741,1.02943027143257,0,0,0,0.303127571446259,0,0.604780586659361,0.248107807818777,0,3.08726103876381,0.640695746278505,0,1.12597744800525,0,1.85051632563187,1.06537035187876,0.164254312027618,10.904343012856,0.581051892299796,0.120859449591622,14.8374788024431,3.49907757956406,0.229628896329213,3.82391452814106,1.96686622439136,0.451199612907412,0.847168708148562,2.35304930753057,0,0.211103257785751,0,0.340187410553031,0.215915916102139,0,0.541892875087706,2.00675909541941,0.254876273045038,0.831076008928724,0.671624264166535,0.219259876645935,0,0.769350375349168,0.656029291399411,0,0,0.0915694648183434,0,4.01985876597321,20.8019278731687,0,0.290012154876366,0,0.460511024178389,0.964856007391714,0.107420244868274,1.0151168573996,0.511359764496605,0.0890320356467374,4.29740779938543,9.99388350298552,0.255225424989168,4.8555734810664,0.929691098594572,0.31481234683064,0,0.308033580176089,0,0.869932992075073,0,0,0,0,0.953150969619124,0,0,0.318203247925937,0,0.539617372749944,2.47083326762449,1.06031162111118,0.202182481573316,3.17020642346017,0.421258456238981,0.48763373908959,0.974853958525138,2.11300293513511,0.272999822815972,0.424216295861138,0,0,0,0.438450885253763,0.578775534266688,1.9676842561399,0.202910376962704,0.92947049429925,0.845086807596724,0,0.0982490410131212,0,0.354761064070598,0.844430541190656,0,0,0.349934720244983,0.384888450902048,6.70302275535787,11.9780083347455,0.659006605437454,4.3050537267123,6.73885902670502,7.98174276366016,3.67557440331135,0,0,0,0,0,0,0,0.79312517629427,0.320472213382419,0.962479855263359,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,2.84136146806413,0.95497793895076,0,0,0,0,0,0,0,0,0.276283915531148,0,0.306806047506464,0.246169610922139,0,0.0898683511473268,0,0.511572370226872,0.591860433821602,0,1.11136990144637,0,0,0,0,1.13697999995054,1.44999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| 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| ||
|short_description=p@chr1:31898174..31898188,+ | |||
}} | }} |
Latest revision as of 07:11, 28 July 2015
Short description: | p@chr1:31898174..31898188, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:31898174..31898188, + |
Coexpression cluster: | C1475_Sebocyte_Prostate_Tracheal_Bronchial_Preadipocyte_Urothelial_Small |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.83e-17 | 42 |
endodermal cell | 1.14e-15 | 58 |
general ecto-epithelial cell | 1.60e-15 | 14 |
epithelial cell | 2.40e-13 | 253 |
respiratory epithelial cell | 2.34e-12 | 13 |
epidermal cell | 1.25e-10 | 9 |
ecto-epithelial cell | 1.59e-09 | 34 |
transitional epithelial cell | 2.69e-09 | 4 |
urothelial cell | 2.69e-09 | 4 |
epithelial cell of tracheobronchial tree | 2.09e-08 | 9 |
epithelial cell of lower respiratory tract | 2.09e-08 | 9 |
mammary gland epithelial cell | 7.65e-08 | 4 |
bronchial epithelial cell | 1.84e-07 | 3 |
embryonic cell | 2.67e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
surface structure | 6.94e-13 | 99 |
endoderm-derived structure | 8.85e-12 | 160 |
endoderm | 8.85e-12 | 160 |
presumptive endoderm | 8.85e-12 | 160 |
orifice | 4.92e-11 | 36 |
mouth | 8.47e-11 | 29 |
stomodeum | 8.47e-11 | 29 |
urothelium | 1.13e-10 | 5 |
mouth mucosa | 2.60e-10 | 13 |
head | 3.99e-10 | 56 |
subdivision of head | 7.91e-10 | 49 |
oral opening | 1.30e-09 | 22 |
anterior region of body | 1.62e-09 | 62 |
craniocervical region | 1.62e-09 | 62 |
transitional epithelium | 8.59e-09 | 6 |
respiratory system | 1.12e-08 | 74 |
digestive system | 3.05e-08 | 145 |
digestive tract | 3.05e-08 | 145 |
primitive gut | 3.05e-08 | 145 |
gingiva | 3.13e-08 | 8 |
mammary gland | 7.65e-08 | 4 |
mammary bud | 7.65e-08 | 4 |
mammary ridge | 7.65e-08 | 4 |
mammary placode | 7.65e-08 | 4 |
epithelial fold | 1.08e-07 | 47 |
ectodermal placode | 1.57e-07 | 31 |
lower respiratory tract epithelium | 1.84e-07 | 3 |
epithelium of bronchus | 1.84e-07 | 3 |
mucosa | 1.88e-07 | 20 |
epithelial bud | 4.09e-07 | 37 |