FFCP PHASE1:Hg19::chr1:238649277..238649316,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:238649277..238649316,- to FFCP PHASE1:Hg19::chr1:238649277..238649316,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=339535 | |EntrezGene=339535 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_NR_015407,uc001hyn.2_5end | |||
|cluster_id=chr1:238649277..238649316,- | |||
|description=CAGE_peak_1_at_LOC339535_5end | |||
|id=chr1:238649277..238649316,- | |||
|ontology_enrichment_celltype=CL:0000055!9.75e-09!180;CL:0000499!1.40e-08!27;CL:0000077!2.00e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000499;1.05e-11;28!CL:0000077;2.00e-08;19!CL:0000327;2.06e-08;15!CL:0000188;4.27e-08;9!CL:0002559;3.47e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000499,8.25e-12,28;CL:0000327,1.77e-08,15;CL:0000077,1.93e-08,19;CL:0000188,3.64e-08,9;CL:0002559,2.95e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!6.94e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004905;3.80e-09;8!UBERON:0000982;3.80e-09;8!UBERON:0004770;3.80e-09;8!UBERON:0004765;8.73e-08;26!UBERON:0002073;3.47e-07;5!UBERON:0011135;5.09e-07;5!UBERON:0002216;5.09e-07;5!UBERON:0011134;5.09e-07;5!UBERON:0002209;5.09e-07;5!UBERON:0002213;5.09e-07;5!UBERON:0007844;5.09e-07;5!UBERON:0011138;5.09e-07;5!UBERON:0001130;5.09e-07;5!UBERON:0001066;5.09e-07;5!UBERON:0001468;5.09e-07;5!UBERON:0005284;7.11e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,3.60e-09,8;UBERON:0000982,3.60e-09,8;UBERON:0004770,3.60e-09,8;UBERON:0002073,2.95e-07,5;UBERON:0005086,2.95e-07,5;UBERON:0011135,4.75e-07,5;UBERON:0002216,4.75e-07,5;UBERON:0011134,4.75e-07,5;UBERON:0002209,4.75e-07,5;UBERON:0002213,4.75e-07,5;UBERON:0005856,4.75e-07,5;UBERON:0005866,4.75e-07,5;UBERON:0005863,4.75e-07,5;UBERON:0007844,4.75e-07,5;UBERON:0011138,4.75e-07,5;UBERON:0001130,4.75e-07,5;UBERON:0001066,4.75e-07,5;UBERON:0001468,4.75e-07,5;UBERON:0005284,6.02e-07,5 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0.527533956456907,5.5694858832021,7.95353701746998,0,0,1.46062018077475,0,0.246242116153576,0.612002073732759,0.940364164434263,0.572471974262113,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0,0,1.50401373190767,0.289693037921647,3.1811437882044,0,0.189069634328136,0.221729397462564,0,3.33996642519167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0,43.9598480299886,1.14734648299525,1.41867352879343,0.560677600142307,0,0.74000264525148,0.311211035399766,0.269421344139376,0.163461903113459,12.2599516392394,9.79499071615998,1.64025002283658,0,0,0.149448680551801,0,0.647491777472526,0.421352420106746,0,0,0,0,0.494533858557114,0,0,0,0.125118519871964,0,3.07284334616587,0.30648779579902,0.300476117813194,0.113432183160021,1.79389635688862,2.34913127700424,1.27159140695737,0.300091096084402,0.103052529238439,2.06112432036503,0.930584281657949,0.337552664482532,0.194874010322397,2.27190396819703,1.74894807420369,3.23292113637624,0,0.403008392910561,0,0.386521706326594,0,0,0.487894824518382,0.132529768321485,0.232387885739037,0.829288440122964,1.26160425437814,1.82488679537915,7.8224766164908,9.64861407289328,2.76269842704961,13.0023019848954,13.7157101517221,0.354920400119532,0.674338760312407,0.241011029883482,0.55146986366197,0.653638332277218,0.71181185733329,0.808987848960987,0.98110732562673,0.38474715694639,0,0,2.4694440679884,1.47008711385542,0,0,0,0,0,0.686271241194102,2.08525542276389,0,0.100528972411631,0.0925884451585296,0,1.03993478527958,1.44331342025273,0,1.05667824812239,0,0,0.190254152234598,0.790204397959275,0,0,0,0,3.74935335947108,0,0.425325291727159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.97048674762886,9.59112151433216,4.9870034358246,6.33431407213111,0,2.535908257668,3.19125739901845,2.08014873822732,8.74505072491283,2.83698264046557,5.59486575933809,0.285955987316295,1.08524321078289,0,0.65147236858747,0,0.791951872933429,0.904318131178758,0,0.599837947092342,0,0,0,3.83399768786532,5.7430967917057,0,0.144781306667579,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,8.22032994518237,8.00272833695483,4.88277042659524,3.95144636908534,0.178428988797162,0,0,3.00946099727719,6.82222512167955,2.0694614258501,6.64225598535437,1.84369168541703,0,11.7480694477644,7.89229874764969,0,0,0,0,0,0.604780586659361,0.248107807818777,0.153461973288062,0.280660094433074,0,0,0,0,0.154209693802656,0.177561725313127,0.164254312027618,0,0.464841513839837,0.120859449591622,0.200506470303285,0.0920809889358963,0.114814448164607,0,0.131124414959424,0.451199612907412,0.308061348417659,0.784349769176855,0,0.105551628892876,0,0,0,0,0.812839312631559,4.51520796469368,1.52925763827023,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0.165018999841176,2.29706215198469,1.30012049207304,0,3.48014585851639,4.31336127921004,2.91656981979646,4.41077031950498,9.99008277274945,5.65565106265491,4.51701125305335,7.03353081609225,0,0.192190067365106,0.638063562472921,0.30347334256665,0.464845549297286,1.5740617341532,0,0,0.532306030317022,0,0,0.429374660225974,12.6533845582287,6.64396791909324,1.71567174531442,0,0,0,0,0.359744915166629,0.54907405947211,0.235624804691373,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0.196498082026242,0,1.41904425628239,2.11107635297664,1.64647446479951,2.65631221636001,1.39973888097993,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,2.67060177818683,0,1.96032172784825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0.935702702041099,0,12.6214942619494,0.222886768554957,0,0,0.296964680832639,0.307160702099232,0,0,0,0,0.63337622438398,0.597743964753209,0,7.55798243562828,0,0,0,0.449341755736634,0,0,0.197286811273867,0,6.66821940867821,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221158519862449,0,0.87754158861589,0,0,1.84680620409113,17.0913083770502,0,0.359030577639089,0,0.638002319463839,0.183195186803725,0,0,0.156980256395025,0,0,0,0,0,0,8.01792645206503,0,0,0,0,0,0,0,0,0,0.202203398942031,2.40773294189637,0,0,0,0,9.86461007123476,0,0,6.25547138322031,0,0,0,0,0,0,5.40758137456606,5.13096290148613,0.173559738335131,0,0,4.36816670605075,34.3972064943233,0.0967563312890851,0.950161122120412,0.656923656425674,0.484945082442097,4.58931858795801,1.80784592624426,1.91858694505451,8.54472830322856,0.316553979779393,0,4.32857629358282,0.213452994739353,0.999048047910651,0,3.6651710773093,9.95250987599394,0.14405479798815,3.85182860252841,0,9.92100704337382,9.30965332179765,0,5.20111061822734,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.335917362433631,2.52209918479682,1.16495949527454,0.0787831823072236,0.0824158583811665,0.0674035438541849,0.196854963029498,0,0,0,3.0543098208353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| ||
|short_description=p1@LOC339535 | |||
}} | }} |
Latest revision as of 16:07, 16 September 2015
Short description: | p1@LOC339535 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LOC339535_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NR_015407, uc001hyn.2_5end |
EntrezGene: | LOC339535 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stromal cell | 8.25e-12 | 28 |
extracellular matrix secreting cell | 1.77e-08 | 15 |
mesothelial cell | 1.93e-08 | 19 |
cell of skeletal muscle | 3.64e-08 | 9 |
hair follicle cell | 2.95e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
articulation | 3.60e-09 | 8 |
skeletal joint | 3.60e-09 | 8 |
articular system | 3.60e-09 | 8 |
hair follicle | 2.95e-07 | 5 |
hair follicle placode | 2.95e-07 | 5 |
intervertebral cartilage | 4.75e-07 | 5 |
symphysis | 4.75e-07 | 5 |
nonsynovial joint | 4.75e-07 | 5 |
fibrous joint | 4.75e-07 | 5 |
cartilaginous joint | 4.75e-07 | 5 |
developing mesenchymal condensation | 4.75e-07 | 5 |
pre-cartilage condensation | 4.75e-07 | 5 |
cartilaginous condensation | 4.75e-07 | 5 |
cartilage element | 4.75e-07 | 5 |
post-cranial axial skeletal system | 4.75e-07 | 5 |
vertebral column | 4.75e-07 | 5 |
intervertebral disk | 4.75e-07 | 5 |
intervertebral joint | 4.75e-07 | 5 |
brain vasculature | 6.02e-07 | 5 |