FFCP PHASE1:Hg19::chr1:209945462..209945477,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:209945462..209945477,- to FFCP PHASE1:Hg19::chr1:209945462..209945477,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:209945462..209945477,- | |||
|coexpression_cluster_id=C3934 | |||
|description=CAGE_peak_at_chr1:209945462..209945477,- | |||
|id=chr1:209945462..209945477,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1001319;2.82e-11;1!CL:1000600;2.82e-11;1!CL:0002251;2.82e-08;20!CL:0000540;2.11e-07;6!CL:0000404;2.11e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000076,8.12e-12,63;CL:1001319,2.68e-11,1;CL:1000600,2.68e-11,1;CL:0002251,2.72e-08,20;CL:0000540,2.18e-07,6;CL:0000031,2.18e-07,6;CL:0000404,2.18e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;2.11e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!6.36e-17!14;DOID:305!1.43e-11!106;DOID:0050687!1.78e-10!143;DOID:162!1.26e-07!235;DOID:14566!4.07e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.70e-57;14!DOID:4362;5.17e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.00e-57,14;DOID:305,4.22e-14,106;DOID:0050687,6.36e-10,143;DOID:4362,5.28e-09,5;DOID:162,1.92e-08,235;DOID:14566,3.25e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.30e-20!57;UBERON:0005068!1.30e-20!57;UBERON:0006241!1.30e-20!57;UBERON:0007135!1.30e-20!57;UBERON:0002780!1.41e-20!41;UBERON:0001890!1.41e-20!41;UBERON:0006240!1.41e-20!41;UBERON:0003080!7.52e-20!42;UBERON:0001893!1.11e-17!34;UBERON:0002616!5.80e-17!59;UBERON:0002791!8.84e-17!33;UBERON:0002020!5.66e-16!34;UBERON:0003528!5.66e-16!34;UBERON:0001869!7.77e-16!32;UBERON:0001017!1.02e-15!82;UBERON:0005743!3.85e-15!86;UBERON:0000955!4.40e-15!69;UBERON:0006238!4.40e-15!69;UBERON:0002346!5.66e-15!90;UBERON:0000924!7.96e-15!173;UBERON:0006601!7.96e-15!173;UBERON:0003056!4.10e-14!61;UBERON:0000073!6.02e-14!94;UBERON:0001016!6.02e-14!94;UBERON:0004121!1.51e-13!169;UBERON:0003075!1.71e-13!86;UBERON:0007284!1.71e-13!86;UBERON:0000033!8.11e-12!123;UBERON:0000153!3.62e-11!129;UBERON:0007811!3.62e-11!129;UBERON:0002420!5.63e-11!9;UBERON:0007245!5.63e-11!9;UBERON:0010009!5.63e-11!9;UBERON:0010011!5.63e-11!9;UBERON:0000454!5.63e-11!9;UBERON:0007023!1.28e-10!115;UBERON:0002619!2.56e-10!22;UBERON:0000956!7.79e-10!25;UBERON:0000203!7.79e-10!25;UBERON:0009663!1.10e-08!7;UBERON:0001950!1.64e-08!20;UBERON:0002308!3.34e-08!9;UBERON:0000125!3.34e-08!9;UBERON:0000344!1.10e-07!12;UBERON:0003729!1.72e-07!5;UBERON:0000349!5.32e-07!5;UBERON:0003343!6.76e-07!4;UBERON:0004785!6.76e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;2.37e-40;4!UBERON:0004785;2.37e-40;4!UBERON:0000974;4.89e-27;6!UBERON:0003729;1.24e-12;13!UBERON:0000344;1.87e-12;20!UBERON:0000997;9.57e-12;1!UBERON:0005056;9.57e-12;1!UBERON:0004176;9.57e-12;1!UBERON:0004645;2.82e-11;1!UBERON:0001256;2.82e-11;1!UBERON:0001259;2.82e-11;1!UBERON:0000161;1.06e-08;19!UBERON:0000166;1.06e-08;19!UBERON:0000002;1.19e-07;6!UBERON:0001560;1.19e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,1.94e-40,4;UBERON:0004785,1.94e-40,4;UBERON:0000974,2.21e-16,10;UBERON:0003729,1.17e-12,13;UBERON:0000344,1.76e-12,20;UBERON:0000997,9.57e-12,1;UBERON:0005056,9.57e-12,1;UBERON:0004645,2.68e-11,1;UBERON:0001256,2.68e-11,1;UBERON:0001259,2.68e-11,1;UBERON:0000002,1.21e-07,6;UBERON:0001560,1.21e-07,6;UBERON:0000166,1.50e-07,22;UBERON:0000161,7.18e-07,36 | |||
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| ||
|short_description=p@chr1:209945462..209945477,- | |||
}} | }} |
Latest revision as of 03:27, 28 July 2015
Short description: | p@chr1:209945462..209945477, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:209945462..209945477, - |
Coexpression cluster: | C3934_glassy_epidermoid_oral_ductal_malignant_squamous_acantholytic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
squamous epithelial cell | 8.12e-12 | 63 |
bladder cell | 2.68e-11 | 1 |
lower urinary tract cell | 2.68e-11 | 1 |
epithelial cell of alimentary canal | 2.72e-08 | 20 |
neuron | 2.18e-07 | 6 |
neuroblast | 2.18e-07 | 6 |
electrically signaling cell | 2.18e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 1.94e-40 | 4 |
respiratory system mucosa | 1.94e-40 | 4 |
neck | 2.21e-16 | 10 |
mouth mucosa | 1.17e-12 | 13 |
mucosa | 1.76e-12 | 20 |
mammalian vulva | 9.57e-12 | 1 |
external female genitalia | 9.57e-12 | 1 |
urinary bladder urothelium | 2.68e-11 | 1 |
wall of urinary bladder | 2.68e-11 | 1 |
mucosa of urinary bladder | 2.68e-11 | 1 |
uterine cervix | 1.21e-07 | 6 |
neck of organ | 1.21e-07 | 6 |
oral opening | 1.50e-07 | 22 |
orifice | 7.18e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.00e-57 | 14 |
carcinoma | 4.22e-14 | 106 |
cell type cancer | 6.36e-10 | 143 |
cervical cancer | 5.28e-09 | 5 |
cancer | 1.92e-08 | 235 |
disease of cellular proliferation | 3.25e-08 | 239 |