FFCP PHASE1:Hg19::chr1:203148495..203148505,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:203148495..203148505,- to FFCP PHASE1:Hg19::chr1:203148495..203148505,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1116 | |EntrezGene=1116 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=1932 | |HGNC=1932 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=105bp_to_uc001gzl.3_5end | |||
|cluster_id=chr1:203148495..203148505,- | |||
|coexpression_cluster_id=C283 | |||
|description=CAGE_peak_13_at_CHI3L1_5end | |||
|id=chr1:203148495..203148505,- | |||
|ontology_enrichment_celltype=CL:0000153!9.54e-19!9;CL:0000447!9.54e-19!9;CL:0000667!8.79e-15!6;CL:0000058!8.79e-15!6;CL:0000138!8.79e-15!6;CL:0000235!6.71e-12!10;CL:0000327!1.24e-11!14;CL:0000135!1.80e-11!3;CL:0000386!1.80e-11!3;CL:0000388!1.80e-11!3;CL:0000499!3.05e-11!27 | |||
|ontology_enrichment_celltype_v019=CL:0000153;3.19e-49;9!CL:0000447;3.19e-49;9!CL:0000138;6.13e-38;6!CL:0000499;2.73e-31;28!CL:0000327;2.63e-29;15!CL:0000135;3.12e-28;3!CL:0000388;3.12e-28;3!CL:0000235;1.40e-24;6!CL:0002540;3.60e-14;6!CL:0000214;1.81e-13;3!CL:0000151;3.17e-12;36!CL:0002092;1.02e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,4.10e-49,9;CL:0000447,4.10e-49,9;CL:0000058,8.66e-38,6;CL:0000138,8.66e-38,6;CL:0000499,3.21e-31,28;CL:0000327,3.05e-29,15;CL:0000135,3.59e-28,3;CL:0000388,3.59e-28,3;CL:0000235,1.27e-24,6;CL:0000151,3.23e-15,36;CL:0002540,2.87e-14,6;CL:0000214,1.70e-13,3;CL:0002092,8.96e-09,10 | |||
|ontology_enrichment_development_v019=UBERON:0010115;3.45e-10;1!UBERON:0004161;7.20e-08;11!UBERON:0009497;9.92e-07;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;3.45e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,3.61e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000043!1.80e-11!3;UBERON:0007023!1.20e-09!115;UBERON:0001049!2.15e-07!57;UBERON:0005068!2.15e-07!57;UBERON:0006241!2.15e-07!57;UBERON:0007135!2.15e-07!57;UBERON:0002148!4.97e-07!2;UBERON:0009662!4.97e-07!2;UBERON:0001017!7.97e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;3.12e-28;3!UBERON:0000043;3.12e-28;3!UBERON:0007845;3.12e-28;3!UBERON:0006915;1.81e-13;3!UBERON:0007616;1.81e-13;3!UBERON:0002217;1.81e-13;3!UBERON:0002018;1.81e-13;3!UBERON:0002363;3.45e-10;1!UBERON:0001282;3.45e-10;1!UBERON:0009842;3.45e-10;1!UBERON:0003704;3.45e-10;1!UBERON:0001171;3.45e-10;1!UBERON:0001172;3.45e-10;1!UBERON:0002371;2.42e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,3.59e-28,3;UBERON:0000043,3.59e-28,3;UBERON:0007845,3.59e-28,3;UBERON:0006915,1.70e-13,3;UBERON:0007616,1.70e-13,3;UBERON:0002217,1.70e-13,3;UBERON:0002018,1.70e-13,3;UBERON:0002363,2.74e-10,1;UBERON:0007645,2.74e-10,1;UBERON:0007647,2.74e-10,1;UBERON:0010115,2.74e-10,1;UBERON:0001282,3.29e-10,1;UBERON:0009842,3.29e-10,1;UBERON:0003704,3.29e-10,1;UBERON:0001171,3.29e-10,1;UBERON:0001172,3.29e-10,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,2.00535164254356,4.05570253090306,11.9292892057665,2.43317435151318,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0.246217006087397,3.04205544681009,2.52672975890838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0.725083469571143,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.48879851773927,4.28083360847872,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,1.48124672601102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,1.5796644907122,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,2.34483573884932,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0.573409195690071,0.332787154610557,0,0,0,0,0,0,0,0,0,0,0.554805861502613,1.51522404220071,13.0815308911339,1.77962244319307,0,0.453692771289717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,1.37190407549935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03608082081518,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.09194519983426,31.8901183755679,1.29787968637137,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,2.00535164254356,4.05570253090306,11.9292892057665,2.43317435151318,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462985512576611,0,0,0,0.246217006087397,3.04205544681009,2.52672975890838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43247561282381,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0.725083469571143,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.48879851773927,4.28083360847872,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,1.48124672601102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,1.5796644907122,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,2.34483573884932,0,0.129282956361551,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3755727921195,0.573409195690071,0.332787154610557,0,0,0,0,0,0,0,0,0,0,0.554805861502613,1.51522404220071,13.0815308911339,1.77962244319307,0,0.453692771289717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,1.37190407549935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03608082081518,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.09194519983426,31.8901183755679,1.29787968637137,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p13@CHI3L1 | |||
}} | }} |
Latest revision as of 22:05, 19 September 2015
Short description: | p13@CHI3L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_CHI3L1_5end |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | 105bp_to_uc001gzl.3_5end |
EntrezGene: | CHI3L1 |
HGNC: | 1932 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 4.10e-49 | 9 |
carbohydrate secreting cell | 4.10e-49 | 9 |
chondroblast | 8.66e-38 | 6 |
chondrocyte | 8.66e-38 | 6 |
stromal cell | 3.21e-31 | 28 |
extracellular matrix secreting cell | 3.05e-29 | 15 |
fibrocyte | 3.59e-28 | 3 |
tendon cell | 3.59e-28 | 3 |
macrophage | 1.27e-24 | 6 |
secretory cell | 3.23e-15 | 36 |
mesenchymal stem cell of the bone marrow | 2.87e-14 | 6 |
synovial cell | 1.70e-13 | 3 |
bone marrow cell | 8.96e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 3.59e-28 | 3 |
tendon | 3.59e-28 | 3 |
regular connective tissue | 3.59e-28 | 3 |
stratified squamous epithelium | 1.70e-13 | 3 |
layer of synovial tissue | 1.70e-13 | 3 |
synovial joint | 1.70e-13 | 3 |
synovial membrane of synovial joint | 1.70e-13 | 3 |
dura mater | 2.74e-10 | 1 |
future meninx | 2.74e-10 | 1 |
ectomeninx | 2.74e-10 | 1 |
future dura mater | 2.74e-10 | 1 |
intralobular bile duct | 3.29e-10 | 1 |
acinus | 3.29e-10 | 1 |
intrahepatic bile duct | 3.29e-10 | 1 |
portal lobule | 3.29e-10 | 1 |
hepatic acinus | 3.29e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 3.61e-10 | 1 |