FFCP PHASE1:Hg19::chr1:170633245..170633256,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:170633245..170633256,+ to FFCP PHASE1:Hg19::chr1:170633245..170633256,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5396 | |EntrezGene=5396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |HGNC=9142 | ||
|TSSclassifier=strong | |||
|UniProt=P54821 | |UniProt=P54821 | ||
|association_with_transcript=-56bp_to_NM_006902,NM_022716,uc001ghe.2,uc001ghf.2_5end | |||
|cluster_id=chr1:170633245..170633256,+ | |||
|coexpression_cluster_id=C851 | |||
|description=CAGE_peak_14_at_PRRX1_5end | |||
|id=chr1:170633245..170633256,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.69e-40!180;CL:0000057!2.77e-29!75;CL:0000680!1.54e-12!57;CL:0000056!1.54e-12!57;CL:0000355!1.54e-12!57;CL:0000187!1.84e-11!54;CL:0002620!2.86e-11!23;CL:0000183!5.88e-10!59;CL:0000393!5.60e-09!60;CL:0000211!5.60e-09!60;CL:0000359!8.98e-09!32;CL:0002334!1.80e-08!12;CL:0000048!8.06e-08!430;CL:0000192!8.94e-08!42;CL:0000514!8.94e-08!42;CL:0000723!3.86e-07!436;CL:0002539!5.25e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000057;3.32e-13;73!CL:0002620;7.34e-13;23!CL:0002334;6.44e-11;12!CL:0002556;4.72e-09;6!CL:0002551;4.04e-08;6!CL:0002320;1.21e-07;188!CL:0002539;3.30e-07;10!CL:0002552;4.97e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.35e-32,76;CL:0000048,2.35e-13,427;CL:0002620,4.30e-13,23;CL:0000723,1.01e-12,433;CL:0000034,6.54e-12,441;CL:0002334,1.12e-10,12;CL:0002556,3.11e-09,6;CL:0002320,1.29e-08,361;CL:0002551,2.98e-08,6;CL:0000680,5.15e-08,58;CL:0000056,5.15e-08,58;CL:0000355,5.15e-08,58;CL:0000187,6.55e-08,55;CL:0000134,9.94e-08,354;CL:0002539,3.26e-07,10;CL:0002552,4.86e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!3.19e-22!83;UBERON:0002329!3.19e-22!83;UBERON:0003077!3.19e-22!83;UBERON:0003059!3.19e-22!83;UBERON:0007282!3.19e-22!83;UBERON:0009618!3.19e-22!83;UBERON:0007285!3.19e-22!83;UBERON:0004290!5.17e-18!70;UBERON:0003102!1.00e-14!95;UBERON:0000486!2.14e-14!82;UBERON:0001134!8.77e-14!61;UBERON:0002036!8.77e-14!61;UBERON:0003082!8.77e-14!61;UBERON:0002385!1.43e-13!63;UBERON:0001015!1.43e-13!63;UBERON:0000383!1.43e-13!63;UBERON:0000475!1.97e-11!365;UBERON:0000948!5.07e-10!24;UBERON:0005498!5.07e-10!24;UBERON:0004140!5.07e-10!24;UBERON:0009881!5.07e-10!24;UBERON:0004141!5.07e-10!24;UBERON:0003084!5.07e-10!24;UBERON:0007005!5.07e-10!24;UBERON:0004139!5.07e-10!24;UBERON:0004291!5.07e-10!24;UBERON:0007100!6.15e-10!27;UBERON:0002199!2.73e-09!45;UBERON:0002416!2.73e-09!45;UBERON:0004872!2.74e-09!84;UBERON:0005256!4.83e-09!143;UBERON:0000479!9.35e-09!787;UBERON:0002097!6.01e-08!40;UBERON:0001637!2.63e-07!42;UBERON:0003509!2.63e-07!42;UBERON:0004572!2.63e-07!42;UBERON:0000468!3.74e-07!659;UBERON:0004237!5.25e-07!10;UBERON:0004695!5.25e-07!10;UBERON:0002111!5.25e-07!10;UBERON:0004178!5.25e-07!10;UBERON:0001013!8.06e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;7.89e-10;31!UBERON:0001015;7.89e-10;31!UBERON:0000383;7.89e-10;31!UBERON:0002204;1.07e-09;70!UBERON:0002384;3.00e-09;198!UBERON:0001758;4.72e-09;6!UBERON:0003672;4.72e-09;6!UBERON:0002067;1.06e-08;9!UBERON:0002199;1.17e-08;46!UBERON:0002416;1.17e-08;46!UBERON:0002097;1.21e-08;41!UBERON:0000948;1.83e-08;22!UBERON:0000075;6.25e-08;16!UBERON:0001434;7.51e-08;36!UBERON:0003102;1.13e-07;50!UBERON:0001013;1.34e-07;14!UBERON:0003129;1.44e-07;7!UBERON:0001134;1.98e-07;16!UBERON:0002036;1.98e-07;16!UBERON:0004237;3.30e-07;10!UBERON:0004695;3.30e-07;10!UBERON:0002111;3.30e-07;10!UBERON:0004178;3.30e-07;10!UBERON:0007100;5.44e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.47e-15,73;UBERON:0003102,4.62e-15,99;UBERON:0002329,6.68e-15,71;UBERON:0003059,6.68e-15,71;UBERON:0007282,6.68e-15,71;UBERON:0004290,6.68e-15,71;UBERON:0009618,6.68e-15,71;UBERON:0003077,1.56e-14,72;UBERON:0007285,1.56e-14,72;UBERON:0007503,1.55e-12,78;UBERON:0002199,3.08e-12,46;UBERON:0002416,3.08e-12,46;UBERON:0000486,4.08e-11,83;UBERON:0002097,7.09e-11,41;UBERON:0001134,1.22e-09,62;UBERON:0002036,1.22e-09,62;UBERON:0003082,1.22e-09,62;UBERON:0002384,2.20e-09,371;UBERON:0001758,3.11e-09,6;UBERON:0003672,3.11e-09,6;UBERON:0002385,4.43e-09,64;UBERON:0001015,4.43e-09,64;UBERON:0000383,4.43e-09,64;UBERON:0002067,6.82e-09,9;UBERON:0004016,6.82e-09,9;UBERON:0010083,6.82e-09,9;UBERON:0000948,9.15e-09,24;UBERON:0005498,9.15e-09,24;UBERON:0004140,9.15e-09,24;UBERON:0009881,9.15e-09,24;UBERON:0004141,9.15e-09,24;UBERON:0003084,9.15e-09,24;UBERON:0007005,9.15e-09,24;UBERON:0004139,9.15e-09,24;UBERON:0004291,9.15e-09,24;UBERON:0000075,4.88e-08,16;UBERON:0003129,1.02e-07,7;UBERON:0001013,1.09e-07,14;UBERON:0007100,2.49e-07,27;UBERON:0004872,2.87e-07,83;UBERON:0004237,3.26e-07,10;UBERON:0004695,3.26e-07,10;UBERON:0002111,3.26e-07,10;UBERON:0004178,3.26e-07,10;UBERON:0000926,5.39e-07,315;UBERON:0004120,5.39e-07,315;UBERON:0006603,5.39e-07,315;UBERON:0005256,6.78e-07,122;UBERON:0011137,9.59e-07,14 | |||
|phase1_expression=2.18014055124668,0.856402095563933,1.26858963686374,4.00293193412522,0,2.61701557230111,0,1.26343974685366,0.783556884599516,0,0,0,0,1.23766352960047,1.32558950291166,2.01697543935533,3.01347264011988,3.65155045193687,1.95173119516203,0.246242116153576,0.612002073732759,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0.164201178899891,0.157421562627358,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.511450247374121,0.722878304769133,1.50401373190767,1.15877215168659,0.795285947051099,0.973269740605272,0,0,0.087834785693126,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0.838998872419812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0.496971951695318,3.03913227994991,0.397227542439656,2.86836620748814,4.25602058638028,1.68203280042692,1.06748995729705,0.49333509683432,1.24484414159907,1.0776853765575,1.30769522490767,0.302714855289863,0,1.64025002283658,3.74592092196385,2.85235910772225,3.13842229158782,2.11382097558777,3.0755859429945,1.82586048712923,2.44985005505872,2.57952066354713,2.6864703105699,2.37600571456411,3.21447008062124,0.910161361938026,0.718618141816238,2.86171393721913,3.1279629967991,3.60183350129438,3.5118209670467,3.98434134538726,4.5071417671979,0.680593098960126,2.87023417102179,1.49490172172997,1.69545520927649,0.900273288253207,2.06105058476878,0.515281080091258,1.67505170698431,1.5189869901714,2.33848812386877,1.00973509697646,0.920498986422993,3.71785930683267,0,1.20902517873168,1.01736355386293,0,0,0,0,0,0,0,0,0,0,3.85944562915731,1.38134921352481,2.3218396401599,0,0.236613600079688,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80327710863402,0.87192013766656,2.86019314701705,0.387815147273333,0,0.845302752556,1.32969058292435,0,2.57207374262142,0,1.0656887160644,0,0.542621605391443,0,2.28015329005615,0,0,0,0,0,0,0,0,1.19812427745791,0,4.27910715122155,0.723906533337896,2.87666851570537,0.537182889719687,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,1.34960640891054,1.50051156317903,0.271265023699736,2.49565033836969,2.3195768543631,2.99634588564476,1.52283839490527,0.601892199455438,2.27407504055985,3.10419213877515,3.32112799267718,1.29058417979192,1.82455590382974,0.587403472388222,0,0,0,0,0,0,0,1.48864684691266,1.53461973288062,2.52594084989766,1.02511319404561,1.02341449813341,0.64341568457443,1.48418066444991,4.78050050788232,2.30830242907065,4.35273926873188,2.07701771673448,4.06736324609857,0,0,0,0.229628896329213,2.73136752010076,1.44236856455367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.325378394664303,0.103041011647722,0,0.247528499761764,0,0,0,1.06337790121334,1.23238893691716,0.767518373630648,0.689182862422653,1.07420244868274,2.17525040871343,1.36362603865761,2.8490251406956,0,0,0,0,0.929691098594572,0.31481234683064,1.3940745403212,2.7723022215848,1.06461206063404,3.47973196830029,1.29726953372744,0.429374660225974,1.116475108079,0.949138274156178,0,0,1.28381696410176,0.95460974377781,0.78494864019923,0.539617372749944,0.274537029736055,0,1.01091240786658,0,1.26377536871694,0,1.46228093778771,0,1.9109987597118,0.424216295861138,3.39024349860728,2.75682671773062,0,0,0,0,0.608731130888112,1.239293992399,1.12678241012897,0.430234056612155,0.589494246078727,0,1.06428319221179,0.844430541190656,0.329294892959902,1.13841952129715,1.04980416073495,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0,0,0,0,0,0.994147647766298,0,0,0,0,1.19548792950642,0,0,0.102268682502155,0,2.17727711363265,0,0,0,0.789147245095469,0,3.33410970433911,0,0.278304294485554,0,0,0,0.724999575434793,0,0,0,0,0,0.520874984799877,0,0,0,0,0.295547618953547,0.438770794307945,0,0,3.15496059865568,0,0,0,0,0,1.09917112082235,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0,0.611030144933625,0,0,0,0.067401132980677,2.40773294189637,0.234264445725339,0,0,0,1.18375320854817,0,0,2.27471686662557,0,0,0,0,0,0,0,1.52542140314453,0,0,0,1.57254001417827,0,0,0,0,0.969890164884194,0,1.35588444468319,0,1.19228767021794,0.126621591911757,0,0.0801588202515337,0.213452994739353,0,0,0,0,0,0,0,1.08723364858891,1.569042694685,0,0.288950589901519,0,0.136905378891993,0,0,0,3.90995361781156,1.60412296808179,0.717873024576814,0,0.858452096273142,0.89268582976749,1.00775208730089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0.104909176269996,0.211200673038813,0,0,2.85878130549347,0.662091970365432,1.5256112259285,0,0,0.653174720218818,0,0,1.02232813071253,0,0,0,0.387848869084652,0.26446520348538,0,0,0.213574825135389,0.78602152549833,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0.157054096250234,0,0.244052529803926,0.500763722825999,0,0,0.124192805882767,0,0.124980407962107,0,0,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| ||
|short_description=p14@PRRX1 | |||
}} | }} |
Latest revision as of 14:22, 18 September 2015
Short description: | p14@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_14_at_PRRX1_5end |
Coexpression cluster: | C851_Fibroblast_mesenchymal_Myoblast_normal_Olfactory_skeletal_Osteoblast |
Association with transcript: | -56bp_to_NM_006902, NM_022716, uc001ghe.2, uc001ghf.2_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.35e-32 | 76 |
multi fate stem cell | 2.35e-13 | 427 |
skin fibroblast | 4.30e-13 | 23 |
somatic stem cell | 1.01e-12 | 433 |
stem cell | 6.54e-12 | 441 |
preadipocyte | 1.12e-10 | 12 |
fibroblast of periodontium | 3.11e-09 | 6 |
connective tissue cell | 1.29e-08 | 361 |
fibroblast of dermis | 2.98e-08 | 6 |
muscle precursor cell | 5.15e-08 | 58 |
myoblast | 5.15e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.15e-08 | 58 |
muscle cell | 6.55e-08 | 55 |
mesenchymal cell | 9.94e-08 | 354 |
aortic smooth muscle cell | 3.26e-07 | 10 |
fibroblast of gingiva | 4.86e-07 | 5 |