FFCP PHASE1:Hg19::chr1:170632959..170632987,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:170632959..170632987,+ to FFCP PHASE1:Hg19::chr1:170632959..170632987,+: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5396 | |EntrezGene=5396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9142 | |HGNC=9142 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-59bp_to_ENST00000239461_5end | |||
|cluster_id=chr1:170632959..170632987,+ | |||
|coexpression_cluster_id=C851 | |||
|description=CAGE_peak_4_at_PRRX1_5end | |||
|id=chr1:170632959..170632987,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.41e-42!180;CL:0000057!5.43e-24!75;CL:0000680!7.68e-17!57;CL:0000056!7.68e-17!57;CL:0000355!7.68e-17!57;CL:0000187!9.89e-16!54;CL:0000183!1.00e-14!59;CL:0000393!1.14e-13!60;CL:0000211!1.14e-13!60;CL:0000192!1.16e-11!42;CL:0000514!1.16e-11!42;CL:0002620!5.04e-11!23;CL:0000359!1.73e-10!32;CL:0002334!4.74e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.64e-12;23!CL:0000359;3.98e-10;32!CL:0000057;4.15e-10;73!CL:0000187;2.97e-09;55!CL:0002334;6.57e-09;12!CL:0000192;1.15e-08;43!CL:0000393;1.79e-07;61!CL:0000211;1.79e-07;61!CL:0002320;1.93e-07;188!CL:0002494;5.28e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.38e-26,76;CL:0000680,2.37e-17,58;CL:0000056,2.37e-17,58;CL:0000355,2.37e-17,58;CL:0000187,4.12e-16,55;CL:0000393,1.89e-13,61;CL:0000211,1.89e-13,61;CL:0002620,1.81e-12,23;CL:0000192,1.40e-11,43;CL:0000514,1.40e-11,43;CL:0000359,1.23e-10,32;CL:0000048,2.91e-10,427;CL:0000723,1.99e-09,433;CL:0002334,6.09e-09,12;CL:0000034,2.20e-08,441;CL:0002494,5.51e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;2.81e-09;58!CL:0000514;1.15e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.16e-25!83;UBERON:0002329!2.16e-25!83;UBERON:0003077!2.16e-25!83;UBERON:0003059!2.16e-25!83;UBERON:0007282!2.16e-25!83;UBERON:0009618!2.16e-25!83;UBERON:0007285!2.16e-25!83;UBERON:0004290!4.91e-22!70;UBERON:0001134!1.10e-18!61;UBERON:0002036!1.10e-18!61;UBERON:0003082!1.10e-18!61;UBERON:0002385!1.51e-18!63;UBERON:0001015!1.51e-18!63;UBERON:0000383!1.51e-18!63;UBERON:0000486!3.97e-18!82;UBERON:0000475!1.79e-17!365;UBERON:0003102!3.27e-12!95;UBERON:0005256!3.87e-11!143;UBERON:0000468!1.92e-10!659;UBERON:0004872!3.15e-10!84;UBERON:0002199!7.64e-10!45;UBERON:0002416!7.64e-10!45;UBERON:0000481!9.73e-10!347;UBERON:0007100!1.70e-09!27;UBERON:0000948!3.45e-09!24;UBERON:0005498!3.45e-09!24;UBERON:0004140!3.45e-09!24;UBERON:0009881!3.45e-09!24;UBERON:0004141!3.45e-09!24;UBERON:0003084!3.45e-09!24;UBERON:0007005!3.45e-09!24;UBERON:0004139!3.45e-09!24;UBERON:0004291!3.45e-09!24;UBERON:0000479!4.02e-09!787;UBERON:0007023!2.50e-08!115;UBERON:0004573!3.72e-08!33;UBERON:0004571!3.72e-08!33;UBERON:0001637!4.50e-08!42;UBERON:0003509!4.50e-08!42;UBERON:0004572!4.50e-08!42;UBERON:0000119!4.60e-08!312;UBERON:0002097!9.16e-08!40;UBERON:0002100!1.79e-07!216;UBERON:0000483!1.79e-07!309;UBERON:0001013!1.96e-07!14;UBERON:0000467!4.57e-07!625;UBERON:0000480!6.29e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.08e-11;31!UBERON:0001015;2.08e-11;31!UBERON:0000383;2.08e-11;31!UBERON:0007100;7.79e-10;25!UBERON:0002204;1.42e-09;70!UBERON:0000948;1.55e-09;22!UBERON:0002384;2.92e-09;198!UBERON:0001134;2.77e-08;16!UBERON:0002036;2.77e-08;16!UBERON:0001013;4.33e-08;14!UBERON:0004573;1.18e-07;33!UBERON:0004571;1.18e-07;33!UBERON:0002199;1.36e-07;46!UBERON:0002416;1.36e-07;46!UBERON:0002097;9.99e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,4.69e-24,73;UBERON:0003077,2.76e-23,72;UBERON:0007285,2.76e-23,72;UBERON:0002329,3.67e-23,71;UBERON:0003059,3.67e-23,71;UBERON:0007282,3.67e-23,71;UBERON:0004290,3.67e-23,71;UBERON:0009618,3.67e-23,71;UBERON:0000486,1.83e-19,83;UBERON:0001134,2.12e-19,62;UBERON:0002036,2.12e-19,62;UBERON:0003082,2.12e-19,62;UBERON:0007503,6.97e-19,78;UBERON:0002385,8.55e-19,64;UBERON:0001015,8.55e-19,64;UBERON:0000383,8.55e-19,64;UBERON:0003102,1.82e-12,99;UBERON:0002199,4.53e-11,46;UBERON:0002416,4.53e-11,46;UBERON:0007100,1.39e-10,27;UBERON:0000948,3.11e-10,24;UBERON:0005498,3.11e-10,24;UBERON:0004140,3.11e-10,24;UBERON:0009881,3.11e-10,24;UBERON:0004141,3.11e-10,24;UBERON:0003084,3.11e-10,24;UBERON:0007005,3.11e-10,24;UBERON:0004139,3.11e-10,24;UBERON:0004291,3.11e-10,24;UBERON:0005256,3.17e-10,122;UBERON:0000479,3.46e-10,773;UBERON:0003104,7.36e-10,160;UBERON:0009142,7.36e-10,160;UBERON:0004872,3.65e-09,83;UBERON:0002097,1.03e-08,41;UBERON:0004573,1.79e-08,33;UBERON:0004571,1.79e-08,33;UBERON:0001013,3.05e-08,14;UBERON:0000926,3.24e-08,315;UBERON:0004120,3.24e-08,315;UBERON:0006603,3.24e-08,315;UBERON:0001637,6.95e-08,42;UBERON:0003509,6.95e-08,42;UBERON:0004572,6.95e-08,42 | |||
|phase1_expression=11.9907730318567,9.42042305120326,8.3163098416623,8.00586386825043,1.34088328328186,4.36169262050184,7.59899634504932,12.0026775951098,4.70134130759709,0,0,0,0.263766978228454,9.2824764720035,4.97096063591874,15.4634783683908,13.8619741445515,9.49403117503585,11.2224543721817,0.61560529038394,1.22400414746552,0.626909442956176,2.28988789704845,1.50561867580173,3.64073654824928,0.993374274723366,0.985207073399349,0.472264687882075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.75227465255847,4.69490601792545,4.2194645408365,13.7346877906135,11.5307719446255,10.5737958841401,8.74814541756209,9.24606253575008,0,0.221729397462564,0.175669571386252,2.75056058545197,0,0,0,0,0,0,0,0,0,1.72046919021225,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0.81014194788176,0.0892997282840798,0,0,0,0.949265659568129,0.183201743930407,0,0,0,13.9152146474689,13.4228342364455,8.07696002960635,10.3261183469573,14.1867352879343,6.16745360156538,3.20246987189115,3.45334567784024,11.2035972743916,3.90660949002095,4.25000948094993,2.4217188423189,2.88087962239999,3.04617861383936,13.4228833037038,5.70471821544449,22.2678534022184,3.87533845524424,3.0755859429945,4.07307339436521,8.77862936396041,4.42203542322365,6.09622108937016,11.8800285728205,11.8688126053707,0.910161361938026,0.718618141816238,4.04006673489759,4.62938523526267,9.42017992646222,10.5354629011401,16.243853177348,19.2304715400444,4.76415169272088,12.1984952268426,10.4643120521098,12.2920502672546,4.80145753735044,8.24420233907511,11.8514648420989,13.7726473685376,14.5147645727489,13.9334917380514,5.04867548488229,6.44349290496095,18.7509425909822,11.3603069605317,8.66468044757706,6.44330250779853,0,0,0,0,0,0.116193942869518,0.414644220061482,0.252320850875628,0,3.12899064659632,9.00537313470039,6.90674606762403,10.2160944167035,13.7157101517221,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,1.71567810298526,0,0,0,0.0925884451585296,3.9096996637239,4.15973914111831,0,0.231860809950154,4.3441216867254,0,0.462985512576611,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0.190493682876507,0,0,0,0.411309970813294,0,0,7.62491373548453,3.48768055066624,10.0473451574702,3.36106460970222,3.57656445851882,7.607724773004,11.7012771297343,15.6011155367049,7.71622122786426,2.83698264046557,6.92697665441858,0.285955987316295,1.62786481617433,0,6.84045987016844,0.355391948742546,0,0,0,0,0,0,0,13.4189919075286,9.18895486672911,12.8373214536647,5.06734573336527,8.42452922456572,6.26713371339634,0,0,0,0,0.508189248444927,1.30139853857622,0.773288812777695,0.167516265334349,1.91381625495949,0,0,0,11.5330002215991,7.50255781589516,2.17012018959788,16.6376689224646,15.3448930365559,6.30809660135739,5.62278791965023,10.5331134904702,2.27407504055985,9.31257641632544,14.6129631677796,8.29661258437664,9.55719759148911,3.13281851940385,4.80400793335198,0,0,0,0,0,0.30239029332968,13.6459294300327,24.55391572609,13.7523446272206,10.1229927912004,10.7458522304008,5.79074116116987,2.96836132889982,10.1778397909753,14.2049380250502,15.8505411106652,8.30807086693794,15.5721907136345,0,0,0,1.49258782613989,4.55227920016793,5.63834984325524,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.769350375349168,0,2.92840555197873,1.75169719801128,0.366277859273374,0.165018999841176,0,0.650060246036521,11.2478750890912,5.89691381581944,4.46740989632469,3.37708084397485,5.09995318192763,6.98231591643779,4.0604674295984,5.88063729171096,9.25933170726069,0,0,0,0,6.507837690162,5.98143458978216,4.1822236209636,6.77673876387395,3.72614221221915,7.82939692867565,4.633105477598,3.43499728180779,13.7698596663077,6.32758849437452,2.2875623270859,1.535386747868,9.84259672478017,11.7735201732597,0.78494864019923,3.77732160924961,0.823611089208164,1.88499843753098,6.67202189191943,4.75530963519025,6.31887684358472,0,4.6305563029944,3.16950440270266,9.28199397574303,0.989838023675989,6.78048699721457,7.16774946609961,2.65375590096488,3.5076070820301,1.73632660280006,10.4943160327461,2.63783490051515,2.16876448669825,5.07052084558035,2.00775893085672,1.96498082026242,0.35667105148125,19.1570974598123,17.0997184591108,14.1596803972758,1.89736586882858,3.14941248220485,0,0,0,1.60044461320525,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.669539831945,0,0,0,0,0,0,1.9882952955326,1.1253553312841,0.111308705022906,0,0.211125408127993,4.98119970627674,1.10513566212459,0,0.20453736500431,2.95403533106567,20.8396523733411,0,0,0,5.91860433821602,0,51.123015466533,0,1.57705766875147,0,0,0,6.52499617891314,0,0,0,0,0,1.73624994933292,0.885741385813839,1.08536794762867,0,0.774054819518572,0.295547618953547,1.53569778007781,0,0,21.1613210885442,0.797594390929008,0,0,0,0,8.70177137317692,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,1.29833183845255,0,2.29989667708682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| ||
|short_description=p4@PRRX1 | |||
}} | }} |
Latest revision as of 14:18, 18 September 2015
Short description: | p4@PRRX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PRRX1_5end |
Coexpression cluster: | C851_Fibroblast_mesenchymal_Myoblast_normal_Olfactory_skeletal_Osteoblast |
Association with transcript: | -59bp_to_ENST00000239461_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.38e-26 | 76 |
muscle precursor cell | 2.37e-17 | 58 |
myoblast | 2.37e-17 | 58 |
multi-potent skeletal muscle stem cell | 2.37e-17 | 58 |
muscle cell | 4.12e-16 | 55 |
electrically responsive cell | 1.89e-13 | 61 |
electrically active cell | 1.89e-13 | 61 |
skin fibroblast | 1.81e-12 | 23 |
smooth muscle cell | 1.40e-11 | 43 |
smooth muscle myoblast | 1.40e-11 | 43 |
vascular associated smooth muscle cell | 1.23e-10 | 32 |
multi fate stem cell | 2.91e-10 | 427 |
somatic stem cell | 1.99e-09 | 433 |
preadipocyte | 6.09e-09 | 12 |
stem cell | 2.20e-08 | 441 |
cardiocyte | 5.51e-07 | 16 |