FFCP PHASE1:Hg19::chr1:165325939..165325958,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4009 | |EntrezGene=4009 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6653 | |HGNC=6653 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TE12 | |UniProt=Q8TE12 | ||
|association_with_transcript=0bp_to_ENST00000342310,NM_177398_5end | |||
|cluster_id=chr1:165325939..165325958,- | |||
|description=CAGE_peak_1_at_LMX1A_5end | |||
|id=chr1:165325939..165325958,- | |||
|ontology_enrichment_celltype=CL:0002322!2.97e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002535;8.34e-18;2!CL:0000214;3.06e-12;3!CL:0002149;9.23e-07;6!CL:0002255;9.23e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,9.07e-18,2;CL:0000214,2.89e-12,3;CL:0002149,9.49e-07,6;CL:0002255,9.49e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!2.12e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:171;2.94e-14;10!DOID:4362;6.34e-08;5!DOID:3095;5.17e-07;22!DOID:2994;5.17e-07;22!DOID:3001;9.23e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.84e-14,10;DOID:0050687,1.02e-08,143;DOID:4362,6.55e-08,5;DOID:3095,5.09e-07,22;DOID:2994,5.09e-07,22;DOID:3001,9.49e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.82e-15!115;UBERON:0000341!1.12e-09!2;UBERON:0003076!1.94e-09!15;UBERON:0003057!1.94e-09!15;UBERON:0004733!2.11e-08!12;UBERON:0002028!2.11e-08!12;UBERON:0007277!2.11e-08!12;UBERON:0004732!9.84e-08!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;6.50e-34;4!UBERON:0000923;6.50e-34;4!UBERON:0010316;6.50e-34;4!UBERON:0005291;6.50e-34;4!UBERON:0002050;2.22e-27;5!UBERON:0005423;2.22e-27;5!UBERON:0006955;8.34e-18;2!UBERON:0004801;8.34e-18;2!UBERON:0006915;3.06e-12;3!UBERON:0007616;3.06e-12;3!UBERON:0002217;3.06e-12;3!UBERON:0002018;3.06e-12;3!UBERON:0000995;9.62e-09;17!UBERON:0003975;2.61e-08;18!UBERON:0004175;2.95e-07;21!UBERON:0000002;8.25e-07;6!UBERON:0001560;8.25e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,9.07e-18,2;UBERON:0004801,9.07e-18,2;UBERON:0006915,2.89e-12,3;UBERON:0007616,2.89e-12,3;UBERON:0002217,2.89e-12,3;UBERON:0002018,2.89e-12,3;UBERON:0000995,3.05e-07,21;UBERON:0005795,5.91e-07,22;UBERON:0003975,5.91e-07,22;UBERON:0000002,8.48e-07,6;UBERON:0001560,8.48e-07,6 | |||
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| ||
|short_description=p1@LMX1A | |||
}} | }} |
Latest revision as of 09:40, 18 September 2015
Short description: | p1@LMX1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LMX1A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000342310, NM_177398_5end |
EntrezGene: | LMX1A |
HGNC: | 6653 |
UniProt: | Q8TE12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 9.07e-18 | 2 |
synovial cell | 2.89e-12 | 3 |
epithelial cell of uterus | 9.49e-07 | 6 |
stromal cell of endometrium | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 9.07e-18 | 2 |
cervix epithelium | 9.07e-18 | 2 |
stratified squamous epithelium | 2.89e-12 | 3 |
layer of synovial tissue | 2.89e-12 | 3 |
synovial joint | 2.89e-12 | 3 |
synovial membrane of synovial joint | 2.89e-12 | 3 |
uterus | 3.05e-07 | 21 |
embryonic uterus | 5.91e-07 | 22 |
internal female genitalia | 5.91e-07 | 22 |
uterine cervix | 8.48e-07 | 6 |
neck of organ | 8.48e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.84e-14 | 10 |
cell type cancer | 1.02e-08 | 143 |
cervical cancer | 6.55e-08 | 5 |
germ cell and embryonal cancer | 5.09e-07 | 22 |
germ cell cancer | 5.09e-07 | 22 |
female reproductive endometrioid cancer | 9.49e-07 | 6 |