FFCP PHASE1:Hg19::chr1:155880695..155880715,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:155880695..155880715,- to FFCP PHASE1:Hg19::chr1:155880695..155880715,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6016 | |EntrezGene=6016 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10023 | |HGNC=10023 | ||
|TSSclassifier=strong | |||
|UniProt=Q92963 | |UniProt=Q92963 | ||
|association_with_transcript=0bp_to_ENST00000368322_5end | |||
|cluster_id=chr1:155880695..155880715,- | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_6_at_RIT1_5end | |||
|id=chr1:155880695..155880715,- | |||
|ontology_enrichment_celltype=CL:0002057!1.68e-18!42;CL:0000766!1.61e-17!76;CL:0000860!1.67e-17!45;CL:0000839!3.77e-17!70;CL:0002194!1.45e-16!63;CL:0000576!1.45e-16!63;CL:0000040!1.45e-16!63;CL:0000559!1.45e-16!63;CL:0002009!2.17e-16!65;CL:0000557!8.00e-16!71;CL:0000763!1.88e-10!112;CL:0000049!1.88e-10!112;CL:0000548!1.16e-08!679;CL:0000004!1.16e-08!679;CL:0000255!1.16e-08!679;CL:0000012!2.86e-08!682;CL:0000003!1.56e-07!722 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.11e-69;33!CL:0002057;7.11e-69;33!CL:0000473;1.21e-50;39!CL:0000234;1.21e-50;39!CL:0000576;4.33e-34;48!CL:0000766;9.38e-20;69!CL:0000763;1.25e-10;100!CL:0002087;2.29e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.07e-58,42;CL:0002057,7.07e-58,42;CL:0000473,6.82e-53,48;CL:0000234,6.82e-53,48;CL:0002194,2.59e-43,59;CL:0000576,2.59e-43,59;CL:0000040,2.59e-43,59;CL:0000559,2.59e-43,59;CL:0002009,1.29e-41,61;CL:0000766,1.63e-41,72;CL:0000839,8.13e-38,66;CL:0000557,4.01e-37,67;CL:0000763,7.04e-28,108;CL:0000049,7.04e-28,108;CL:0000738,2.18e-21,136;CL:0002087,2.49e-19,115;CL:0002031,3.68e-18,120;CL:0002032,1.60e-16,161;CL:0000837,1.60e-16,161;CL:0000037,2.01e-15,168;CL:0000988,3.44e-15,177 | |||
|ontology_enrichment_development_v019=CL:0002057;2.79e-43;42!CL:0000049;1.28e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.12e-13!80;UBERON:0001474!1.32e-13!86;UBERON:0002390!2.51e-10!102;UBERON:0003061!2.51e-10!102;UBERON:0004765!4.59e-10!101;UBERON:0001434!4.59e-10!101;UBERON:0002204!6.97e-10!167;UBERON:0002193!7.67e-10!112;UBERON:0002405!1.67e-08!115;UBERON:0003081!1.72e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.05e-31,76;UBERON:0001474,9.41e-29,82;UBERON:0002405,5.26e-26,93;UBERON:0004765,1.99e-25,90;UBERON:0002390,3.04e-24,98;UBERON:0003061,3.04e-24,98;UBERON:0002193,1.22e-22,108;UBERON:0001434,5.07e-22,100;UBERON:0003081,1.54e-13,203;UBERON:0002204,2.25e-13,167;UBERON:0000926,9.20e-07,315;UBERON:0004120,9.20e-07,315;UBERON:0006603,9.20e-07,315 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0.672325146451775,0.602694528023977,1.46062018077475,0.487932798790507,0,0,0,0.286235987131057,0.136874425072884,0,0.229240217243854,0.410502947249729,0.0787107813136792,0,0.383829398097213,0.464448369948228,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0.895661896959697,0.647787332037959,1.54545340580512,1.59938062657521,3.02300754951048,1.69808842831471,3.95129362739664,6.57868620834921,7.74265927237759,4.31538588483226,6.14785695669842,4.7296445977717,2.06847408441971,1.93645405075148,4.06279459783025,4.32957380947991,11.4620583024295,10.7867272533641,2.75475503133812,13.1580901101198,3.83602275479425,4.28806690242731,5.78444607102732,3.40979800426155,5.80418477257168,10.2129340444405,14.9477339758938,2.76373531782418,4.69334626578181,4.56096573880745,4.23779651843358,7.73383035573886,5.37986058649504,0,0,0,0.112328631146495,0,0,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0.473447805734733,0,0,0,0,0.270803863765016,0,0,0.164437904603676,0,0,0,0,1.04535523804977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0.50133791063589,0,0.795285947051099,0,0.189069634328136,0.886917589850256,0.263504357079378,0.130979075497713,0,0,0.649094787309367,0.174129737299267,0.531831842075461,0,0,0,0.39752481473341,0.860234595106124,0,0,0,0.275118041940067,0,0,1.06729878806013,0.66944122552934,0,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0,0,0,0.366403487860815,6.58902087180316,0,0,0.993943903390637,0.886413581652058,0.794455084879313,0.286836620748814,0,0.560677600142307,0,0.24666754841716,0,0.269421344139376,0,0.151357427644931,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0.226864366320042,0,0.213557388818567,0,0,0.103052529238439,0,0.18611685633159,0,0.292311015483596,0,0.184099797284599,0,0.355009592516614,0.302256294682921,0.169560592310488,0,0,0,0,0,0.348581828608555,0.310983165046111,0,0,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0.100528972411631,0,0,0,0,0.579652024875384,0.469634776943287,0,0,0.190254152234598,0,0,0,1.17002132569619,0.148631162288728,0,0,0,0.268675568108545,0,0,0.985326475791887,0.616339038092582,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0.1466765716419,0.387815147273333,0,0,1.32969058292435,1.04007436911366,0.257207374262142,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0.602878754119172,0.871533458600294,0.699810938274399,0,0,0,2.87549826589899,0,0,0.434343920002738,0,0.179060963239896,0,0.197030760201927,0,0.128343036279748,1.52456774533478,0,0,0,0.637938751653163,0,2.99161459204025,1.24324654030811,0.12269149171914,0,0,0.415941723061614,0.356857977594324,0.315404830067869,0.117141414992713,0.601892199455438,0,0,0.664225598535437,0.184369168541703,0.0868836144680828,0.587403472388222,0,0,0.215714200818617,0,0.606255142892519,1.66435439510497,0,0.496215615637554,0.153461973288062,0,0.128139149255701,1.02341449813341,0.160853921143607,0,0.154209693802656,0,0.246381468041427,0,0,0.120859449591622,0.601519410909855,0,0.459257792658427,0.182091168006717,0.655622074797121,0.451199612907412,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0,0,0.325378394664303,0,0.183138929636687,0.165018999841176,0,0,0,0,0,0.15350367472613,0.137836572484531,0,0.145016693914229,0,0.178064071293475,0.165284915360978,0,0.127612712494584,0.2023155617111,0.464845549297286,0.94443704049192,0,0,1.06461206063404,0,0.37064843820784,0.715624433709956,0.744316738719335,0,0.38126038784765,0,0,0,0.78494864019923,0.179872457583315,0.274537029736055,0.235624804691373,0.202182481573316,0,0,0,1.21856744815642,0,0.682499557039929,0.424216295861138,0,1.10273068709225,0.66343897524122,0,0,0,0.811641507850816,0,0,0,0.0982490410131212,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,1.13929437434833,0,0,0,0.540031437238115,0,0,0,0,0.185803175125719,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0,0.166849141711909,0,0,0,0,0,0,0.18714054040822,0,0,0,0.284136146806413,0.23874448473769,0.296964680832639,0,0,0,0.111308705022906,0.16480387422676,0.211125408127993,0,0,0,0.306806047506464,0.246169610922139,2.17727711363265,0.269605053441981,4.47552936689023,0,0.493217028184668,0,0,0,0,0,0,0.0874599999961957,0,0.341380344856499,0.762760950878299,0.236387681767936,0,0,0,0,0,0,0.110579259931225,0,0.438770794307945,0,0.139423744278603,0,0.113942055847001,0,0,0,0,0.366390373607449,0,0,0,0,0.225595660617181,0,0.335643173951685,0,0,0.210998064528027,0.163232808159148,0,0.216388639742091,0,0,0,0,0,0,0,0,0.234264445725339,0,0.19566461893209,0.485560759068186,0,0,0,0.126373159256976,0.150323419414493,0,0.664653872707185,0,0,1.19472429772959,0.284609546029793,0.554698692052555,0,0.0979923974143777,0.3482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| 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| ||
|short_description=p6@RIT1 | |||
}} | }} |
Latest revision as of 13:35, 17 September 2015
Short description: | p6@RIT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RIT1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 0bp_to_ENST00000368322_5end |
EntrezGene: | RIT1 |
HGNC: | 10023 |
UniProt: | Q92963 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.07e-58 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.07e-58 | 42 |
defensive cell | 6.82e-53 | 48 |
phagocyte | 6.82e-53 | 48 |
monopoietic cell | 2.59e-43 | 59 |
monocyte | 2.59e-43 | 59 |
monoblast | 2.59e-43 | 59 |
promonocyte | 2.59e-43 | 59 |
macrophage dendritic cell progenitor | 1.29e-41 | 61 |
myeloid leukocyte | 1.63e-41 | 72 |
myeloid lineage restricted progenitor cell | 8.13e-38 | 66 |
granulocyte monocyte progenitor cell | 4.01e-37 | 67 |
myeloid cell | 7.04e-28 | 108 |
common myeloid progenitor | 7.04e-28 | 108 |
leukocyte | 2.18e-21 | 136 |
nongranular leukocyte | 2.49e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 3.68e-18 | 120 |
hematopoietic oligopotent progenitor cell | 1.60e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.60e-16 | 161 |
hematopoietic stem cell | 2.01e-15 | 168 |
hematopoietic cell | 3.44e-15 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.05e-31 | 76 |
bone element | 9.41e-29 | 82 |
immune system | 5.26e-26 | 93 |
skeletal element | 1.99e-25 | 90 |
hematopoietic system | 3.04e-24 | 98 |
blood island | 3.04e-24 | 98 |
hemolymphoid system | 1.22e-22 | 108 |
skeletal system | 5.07e-22 | 100 |
lateral plate mesoderm | 1.54e-13 | 203 |
musculoskeletal system | 2.25e-13 | 167 |
mesoderm | 9.20e-07 | 315 |
mesoderm-derived structure | 9.20e-07 | 315 |
presumptive mesoderm | 9.20e-07 | 315 |