FFCP PHASE1:Hg19::chr19:18507327..18507341,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:18507327..18507341,- to FFCP PHASE1:Hg19::chr19:18507327..18507341,-: NSchange) |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=126364 | |EntrezGene=126364 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=29806 | |HGNC=29806 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=130bp_to_DQ890924_5end | |||
|cluster_id=chr19:18507327..18507341,- | |||
|coexpression_cluster_id=C31 | |||
|description=CAGE_peak_5_at_LRRC25_5end | |||
|id=chr19:18507327..18507341,- | |||
|ontology_enrichment_celltype=CL:0000766!3.10e-16!76;CL:0000767!2.63e-15!3;CL:0002057!5.11e-14!42;CL:0000860!6.39e-13!45;CL:0002194!1.04e-11!63;CL:0000576!1.04e-11!63;CL:0000040!1.04e-11!63;CL:0000559!1.04e-11!63;CL:0002009!2.89e-11!65;CL:0000839!2.89e-10!70;CL:0000094!4.27e-10!8;CL:0000557!4.41e-10!71;CL:0000763!8.68e-10!112;CL:0000049!8.68e-10!112;CL:0002393!5.80e-09!9;CL:0002397!5.80e-09!9;CL:0000738!4.77e-08!140;CL:0000875!2.19e-07!3;CL:0002396!2.19e-07!3;CL:0000081!2.35e-07!11 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008814;3.44e-21;2!UBERON:0010056;3.44e-21;2!UBERON:0004872;5.70e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.72e-13!115;UBERON:0002193!8.85e-10!112;UBERON:0002390!9.69e-10!102;UBERON:0003061!9.69e-10!102;UBERON:0002371!1.22e-08!80;UBERON:0002106!6.98e-08!3;UBERON:0004854!6.98e-08!3;UBERON:0009034!6.98e-08!3;UBERON:0002095!6.98e-08!3;UBERON:0004782!6.98e-08!3;UBERON:0003281!6.98e-08!3;UBERON:0009664!6.98e-08!3;UBERON:0002296!6.98e-08!3;UBERON:0005602!6.98e-08!3;UBERON:0001179!6.98e-08!3;UBERON:0006293!6.98e-08!3;UBERON:0001474!7.55e-08!86;UBERON:0001723!1.07e-07!3;UBERON:0001033!1.07e-07!3;UBERON:0010056!1.07e-07!3;UBERON:0002240!2.26e-07!3;UBERON:0004765!2.43e-07!101;UBERON:0001434!2.43e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0002426;2.21e-40;1!UBERON:0003831;2.21e-40;1!UBERON:0003898;2.21e-40;1!UBERON:0004830;2.21e-40;1!UBERON:0003830;2.21e-40;1!UBERON:0005175;2.21e-40;1!UBERON:0001774;2.21e-40;1!UBERON:0001103;2.21e-40;1!UBERON:0000341;3.44e-21;2!UBERON:0005090;5.70e-21;2!UBERON:0001630;5.70e-21;2!UBERON:0001723;1.31e-14;3!UBERON:0001033;1.31e-14;3!UBERON:0002106;1.60e-14;3!UBERON:0001134;7.13e-11;16!UBERON:0002036;7.13e-11;16!UBERON:0004177;2.97e-09;5!UBERON:0005057;2.97e-09;5!UBERON:0000974;5.73e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,2.21e-40,1;UBERON:0003831,2.21e-40,1;UBERON:0003898,2.21e-40,1;UBERON:0004830,2.21e-40,1;UBERON:0003830,2.21e-40,1;UBERON:0005175,2.21e-40,1;UBERON:0001774,2.21e-40,1;UBERON:0001103,2.21e-40,1;UBERON:0010084,2.21e-40,1;UBERON:0000341,3.11e-21,2;UBERON:0005090,5.70e-21,2;UBERON:0001630,5.70e-21,2;UBERON:0001723,1.40e-14,3;UBERON:0001033,1.40e-14,3;UBERON:0010056,1.40e-14,3;UBERON:0002106,1.60e-14,3;UBERON:0004854,1.60e-14,3;UBERON:0009034,1.60e-14,3;UBERON:0002095,1.60e-14,3;UBERON:0004782,1.60e-14,3;UBERON:0003281,1.60e-14,3;UBERON:0009664,1.60e-14,3;UBERON:0002296,1.60e-14,3;UBERON:0005602,1.60e-14,3;UBERON:0001179,1.60e-14,3;UBERON:0006293,1.60e-14,3;UBERON:0004177,5.70e-07,7;UBERON:0005057,5.70e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0.411167888021826,0,0,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0,0.422510572623884,0,0.628975936525128,0,0,0,0,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84793052341245,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,3.57138888323444,0.837952543656503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,4.69114760182158,0,0,0,0,0,0,4.57205170583619,0.342233301085281,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0.232429036905685,0.411167888021826,0,0,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0,0,0.422510572623884,0,0.628975936525128,0,0,0,0,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84793052341245,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,3.57138888323444,0.837952543656503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,4.69114760182158,0,0,0,0,0,0,4.57205170583619,0.342233301085281,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@LRRC25 | |||
}} | }} |
Latest revision as of 15:57, 16 September 2015
Short description: | p5@LRRC25 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LRRC25_5end |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | 130bp_to_DQ890924_5end |
EntrezGene: | LRRC25 |
HGNC: | 29806 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chest muscle | 2.21e-40 | 1 |
respiratory system muscle | 2.21e-40 | 1 |
skeletal muscle of trunk | 2.21e-40 | 1 |
respiratory system skeletal muscle | 2.21e-40 | 1 |
thoracic segment muscle | 2.21e-40 | 1 |
chest organ | 2.21e-40 | 1 |
muscle of trunk | 2.21e-40 | 1 |
diaphragm | 2.21e-40 | 1 |
future diaphragm | 2.21e-40 | 1 |
throat | 3.11e-21 | 2 |
muscle structure | 5.70e-21 | 2 |
muscle organ | 5.70e-21 | 2 |
tongue | 1.40e-14 | 3 |
gustatory system | 1.40e-14 | 3 |
future tongue | 1.40e-14 | 3 |
spleen | 1.60e-14 | 3 |
gastrointestinal system mesentery | 1.60e-14 | 3 |
stomach region | 1.60e-14 | 3 |
mesentery | 1.60e-14 | 3 |
gastrointestinal system serosa | 1.60e-14 | 3 |
mesentery of stomach | 1.60e-14 | 3 |
gut mesentery | 1.60e-14 | 3 |
dorsal mesentery | 1.60e-14 | 3 |
dorsal mesogastrium | 1.60e-14 | 3 |
peritoneal cavity | 1.60e-14 | 3 |
spleen primordium | 1.60e-14 | 3 |
hemopoietic organ | 5.70e-07 | 7 |
immune organ | 5.70e-07 | 7 |