FFCP PHASE1:Hg19::chr18:47901365..47901404,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:47901365..47901404,+ to FFCP PHASE1:Hg19::chr18:47901365..47901404,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=220134 | |EntrezGene=220134 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28109 | |HGNC=28109 | ||
|TSSclassifier=strong | |||
|UniProt=Q96BD8 | |UniProt=Q96BD8 | ||
|association_with_transcript=0bp_to_ENST00000285116,ENST00000398452,ENST00000417656,NM_001039535,NM_145060,uc002let.2,uc002leu.2,uc010xdl.1_5end | |||
|cluster_id=chr18:47901365..47901404,+ | |||
|coexpression_cluster_id=C3724 | |||
|description=CAGE_peak_3_at_SKA1_5end | |||
|id=chr18:47901365..47901404,+ | |||
|ontology_enrichment_celltype=CL:0000548!5.86e-17!679;CL:0000004!5.86e-17!679;CL:0000255!5.86e-17!679;CL:0000012!2.24e-16!682;CL:0000066!2.95e-13!254;CL:0000003!6.28e-10!722;CL:0002321!1.35e-09!248;CL:0000220!1.63e-09!246;CL:0000055!2.23e-07!180;CL:0000063!2.32e-07!578;CL:0000144!9.63e-07!625 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.66e-12,253;CL:0002321,1.07e-08,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!2.85e-36!235;DOID:14566!3.67e-36!239;DOID:0050686!4.36e-19!137;DOID:2531!2.29e-17!51;DOID:0060083!2.29e-17!51;DOID:0050687!8.09e-16!143;DOID:1240!3.62e-14!39;DOID:305!1.98e-12!106;DOID:8692!2.95e-10!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;4.87e-12;39!DOID:2531;4.32e-11;51!DOID:0060083;4.32e-11;51!DOID:8692;8.48e-11;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.24e-34,235;DOID:14566,1.95e-34,239;DOID:2531,1.46e-18,51;DOID:0060083,1.46e-18,51;DOID:0050686,5.42e-18,137;DOID:1240,3.64e-15,39;DOID:0050687,2.50e-14,143;DOID:305,2.12e-11,106;DOID:8692,5.40e-11,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0.642301571672949,0,0,0,0,2.53299878168311,0,0,7.37201809504527,3.48900583986214,6.55324116390517,1.31883489114227,0.123766352960047,0,0,0,0,0,8.49535300729837,6.73202281106035,2.5076377718247,5.15224776835902,4.79060487755095,4.2684497462233,8.71112825526644,8.37426012389447,10.1536907894646,0.393364276848904,0.767658796194425,0.154816123316076,2.75826367343678,5.12050061923025,2.58827807116751,10.8454080812422,8.38798471675787,0.587200878669695,0,0.200544447470142,0,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0.32145117339416,0,0,0,0,1.09227722252426,0,0.426730222566507,0.800791974072025,1.14950487990897,0,0.954053754535364,1.1384259382189,1.76171156811282,0.382273228125229,0,0,2.37045676297569,0.393419540227666,0,0.205601498999509,0.334372990781356,0,0,0,2.56244050835899,0.883817722424512,0.886135578334485,0.812411591295047,3.71464827204458,4.03183977435623,4.1109476150919,4.14525026678773,3.18783394308558,0,0,0,4.53237370790265,0,0,0.253019692019503,0.318565414324097,0,0.950452044448374,0.150575119077773,0.639933055772092,0,0.473554504088034,0.821127996921047,0.604820229674197,0,0.144824403882799,0,8.04841031644363,4.60305222636709,10.4817354191524,0,0.869079113764942,9.54343136461319,0.973269740605272,2.6469748805939,1.10864698731282,2.19586964232815,3.07800827419625,5.82872461268068,8.15725774125745,0,0,0,0,0,0,5.56534740626774,0.860234595106124,5.9013885273291,3.39184765154406,5.45349267072878,3.30141650328081,3.34391946458897,0.775250277507987,0.35576626268671,1.00416183829401,2.01414658554573,0.760272105718513,1.95249646038536,3.67663080345869,2.43042584364528,7.67977663243086,9.20570427767296,7.77019215334923,1.53316637465883,2.84779697870439,2.5648244150257,0,0,6.10531672999548,0.993943903390637,4.17880688493113,0.132409180813219,3.15520282823695,7.09336764396714,1.68203280042692,1.06748995729705,0.98667019366864,5.60179863719579,4.98429486657846,8.00963325255948,1.66493170409425,0,32.5706790248977,0.936480230490962,5.13424639390004,1.04614076386261,14.0921398372518,9.38863077335163,10.1124580825619,2.44985005505872,6.87872176945901,2.89312187292143,0,1.23633464639278,17.2930658768225,2.15585442544872,7.40678901397891,8.25782231154963,8.58898758000967,8.77955241761676,1.83892677479412,2.10333282469236,6.01190570748112,3.58779271377724,0.427114777637135,1.90738711043606,1.50045548042201,2.26715564324566,0.257640540045629,0.930584281657949,2.02531598689519,7.4052123922511,0.504867548488229,0.828449087780694,0.80823028409406,1.42003837006646,5.44061330429257,4.91725717700414,0.966304265816484,1.63647672354501,2.00763216772303,2.43947412259191,2.91565490307268,3.60201222895507,2.07322110030741,3.28017106138317,4.37972830890996,0,1.28648187638577,1.38134921352481,0,0,7.8082488026297,8.42923450390509,12.2915625240576,6.50734439121124,5.88274499049497,10.4399072408883,5.66291494272691,7.45641567476315,11.5424147083917,8.11971000087113,9.81692416624121,8.231480226628,10.2906097969879,0,0,0,10.153651286537,4.67356066463832,2.91665277507493,0.98775256867763,2.24803506515239,6.53438320675601,4.0738915869753,5.86454949558584,14.5590869939141,0,2.08674728955138,0.70445216541493,3.46479474626577,1.38895653772983,1.14152491340759,0.790204397959275,1.71697232418975,0.246217006087397,1.17002132569619,2.52672975890838,0,1.17587489739202,2.83550194484773,24.2703596524719,17.1474023723238,5.36735750831296,6.89728533054321,2.72950145441001,0.621984346622316,0.576479813667846,0.50496973370552,6.92127047784643,2.29193055334967,0,3.4214489204541,3.39330725920968,4.50514586765876,0.857479297891735,11.3252395188814,5.66748089483264,8.5072411552302,0.387815147273333,0,7.607724773004,0.797814349754612,3.12022310734098,13.1175760873692,15.6034045225606,9.05835408654738,2.00169191121407,1.08524321078289,9.05564370458846,8.14340460734338,1.77695974371273,7.12756685640086,0.301439377059586,0,1.59956785891291,1.2162378064119,0,0,2.39624855491583,0,9.98458335285029,2.46128221334885,2.67119219315498,4.83464600747718,21.8566030787378,0.197030760201927,0.862510299438069,0.128343036279748,1.01637849688985,2.60279707715243,1.54657762555539,0.837581326671744,2.55175500661265,0,0,0.414415513436035,0.24538298343828,0,0.542530047399471,0.623912584592421,1.24900292158013,0.630809660135739,1.52283839490527,0,0,0,4.64957918974806,2.94990669666725,3.82287903659565,0.587403472388222,0,0,0,0,1.5156378572313,0,2.41912234663744,0.496215615637554,0.460385919864187,0,0,2.04682899626681,0.160853921143607,0,7.09364591492216,2.84098760501003,5.91315523299426,5.19254429183621,4.18357362455853,3.74664293734029,0,0,27.440653111341,15.1135669445575,2.22911505431021,5.86559496779635,4.08181286653398,5.49044838423799,7.30696123266303,3.27210049567915,7.96133688496276,7.99440414799624,7.98888889577916,7.71136263451447,5.68987518842091,1.50506932156456,9.43042210266642,9.14183609821597,6.04461837749881,64.9009234871966,55.6857510683038,2.0516010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| ||
|short_description=p3@SKA1 | |||
}} | }} |
Latest revision as of 18:23, 19 September 2015
Short description: | p3@SKA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SKA1_5end |
Coexpression cluster: | C3724_retinoblastoma_Reticulocytes_acute_adrenal_NK_myxofibrosarcoma_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000285116, ENST00000398452, ENST00000417656, NM_001039535, NM_145060, uc002let.2, uc002leu.2, uc010xdl.1_5end |
EntrezGene: | SKA1 |
HGNC: | 28109 |
UniProt: | Q96BD8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.66e-12 | 253 |
embryonic cell | 1.07e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.24e-34 | 235 |
disease of cellular proliferation | 1.95e-34 | 239 |
hematologic cancer | 1.46e-18 | 51 |
immune system cancer | 1.46e-18 | 51 |
organ system cancer | 5.42e-18 | 137 |
leukemia | 3.64e-15 | 39 |
cell type cancer | 2.50e-14 | 143 |
carcinoma | 2.12e-11 | 106 |
myeloid leukemia | 5.40e-11 | 31 |