FFCP PHASE1:Hg19::chr17:76183121..76183140,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:76183121..76183140,- to FFCP PHASE1:Hg19::chr17:76183121..76183140,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7083 | |EntrezGene=7083 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11830 | |HGNC=11830 | ||
|TSSclassifier=strong | |||
|UniProt=P04183 | |UniProt=P04183 | ||
|association_with_transcript=-10bp_to_ENST00000405273_5end | |||
|cluster_id=chr17:76183121..76183140,- | |||
|coexpression_cluster_id=C2408 | |||
|description=CAGE_peak_1_at_TK1_5end | |||
|id=chr17:76183121..76183140,- | |||
|ontology_enrichment_celltype=CL:0000548!4.26e-26!679;CL:0000004!4.26e-26!679;CL:0000255!4.26e-26!679;CL:0000012!1.20e-25!682;CL:0000066!1.96e-23!254;CL:0002321!2.15e-17!248;CL:0000220!2.43e-17!246;CL:0000003!1.01e-15!722;CL:0000055!1.39e-13!180;CL:0000144!1.82e-12!625;CL:0000222!4.87e-12!119;CL:0000063!7.95e-11!578;CL:0002371!1.25e-09!591;CL:0000076!8.74e-09!62;CL:0000213!7.54e-08!57;CL:0000215!7.54e-08!57;CL:0002078!3.89e-07!44;CL:0000057!4.75e-07!75;CL:1000449!7.01e-07!16;CL:1000497!7.34e-07!18;CL:0002518!7.34e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.21e-07;15!CL:1000497;1.48e-07;17!CL:0002518;1.48e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.88e-24,253;CL:0002321,1.46e-17,250;CL:0000222,3.60e-12,121;CL:0000076,1.54e-08,63;CL:0000213,3.48e-08,58;CL:0000215,3.48e-08,58;CL:1000449,1.15e-07,15;CL:1000497,1.41e-07,17;CL:0002518,1.41e-07,17;CL:0002078,1.80e-07,45;CL:0000115,6.45e-07,36;CL:0000057,9.02e-07,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!4.05e-25!235;DOID:14566!3.67e-24!239;DOID:0050687!2.34e-13!143;DOID:305!1.02e-11!106;DOID:0050686!6.37e-11!137;DOID:2531!8.19e-10!51;DOID:0060083!8.19e-10!51;DOID:1240!3.74e-09!39;DOID:8692!2.44e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;4.63e-08;31!DOID:1240;3.12e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.58e-25,235;DOID:14566,2.37e-24,239;DOID:0050687,2.01e-13,143;DOID:305,8.96e-12,106;DOID:0050686,5.04e-11,137;DOID:2531,7.36e-10,51;DOID:0060083,7.36e-10,51;DOID:1240,3.39e-09,39;DOID:8692,2.24e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0003104!8.82e-11!238;UBERON:0009142!8.82e-11!238;UBERON:0005256!1.69e-08!143;UBERON:0000490!1.60e-07!138;UBERON:0002100!2.26e-07!216;UBERON:0000072!4.05e-07!46;UBERON:0003914!4.72e-07!118;UBERON:0004211!7.01e-07!16;UBERON:0001285!7.01e-07!16;UBERON:0007684!7.01e-07!16;UBERON:0003220!7.01e-07!16;UBERON:0004208!7.01e-07!16;UBERON:0001737!7.85e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.21e-07;15!UBERON:0004819;1.21e-07;15!UBERON:0001285;1.21e-07;15!UBERON:0007684;1.21e-07;15!UBERON:0000353;4.43e-07;15!UBERON:0001737;7.33e-07;9!UBERON:0001557;7.33e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,4.40e-09,148;UBERON:0004211,1.15e-07,15;UBERON:0009773,1.15e-07,15;UBERON:0001231,1.15e-07,15;UBERON:0001285,1.15e-07,15;UBERON:0007684,1.15e-07,15;UBERON:0004208,1.15e-07,15;UBERON:0007503,3.02e-07,78;UBERON:0002100,3.49e-07,199;UBERON:0003914,3.91e-07,117;UBERON:0000353,4.28e-07,15;UBERON:0006555,7.01e-07,16;UBERON:0004819,7.01e-07,16;UBERON:0001737,7.33e-07,9;UBERON:0000072,9.77e-07,47 | |||
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| ||
|short_description=p1@TK1 | |||
}} | }} |
Latest revision as of 20:35, 17 September 2015
Short description: | p1@TK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TK1_5end |
Coexpression cluster: | C2408_Alveolar_Renal_Mesenchymal_Mammary_chronic_Smooth_Trabecular |
Association with transcript: | -10bp_to_ENST00000405273_5end |
EntrezGene: | TK1 |
HGNC: | 11830 |
UniProt: | P04183 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.88e-24 | 253 |
embryonic cell | 1.46e-17 | 250 |
mesodermal cell | 3.60e-12 | 121 |
squamous epithelial cell | 1.54e-08 | 63 |
lining cell | 3.48e-08 | 58 |
barrier cell | 3.48e-08 | 58 |
epithelial cell of nephron | 1.15e-07 | 15 |
kidney cell | 1.41e-07 | 17 |
kidney epithelial cell | 1.41e-07 | 17 |
meso-epithelial cell | 1.80e-07 | 45 |
endothelial cell | 6.45e-07 | 36 |
fibroblast | 9.02e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 4.40e-09 | 148 |
nephron epithelium | 1.15e-07 | 15 |
renal tubule | 1.15e-07 | 15 |
nephron tubule | 1.15e-07 | 15 |
nephron | 1.15e-07 | 15 |
uriniferous tubule | 1.15e-07 | 15 |
nephrogenic mesenchyme | 1.15e-07 | 15 |
epithelial vesicle | 3.02e-07 | 78 |
trunk | 3.49e-07 | 199 |
epithelial tube | 3.91e-07 | 117 |
parenchyma | 4.28e-07 | 15 |
excretory tube | 7.01e-07 | 16 |
kidney epithelium | 7.01e-07 | 16 |
larynx | 7.33e-07 | 9 |
segment of respiratory tract | 9.77e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.58e-25 | 235 |
disease of cellular proliferation | 2.37e-24 | 239 |
cell type cancer | 2.01e-13 | 143 |
carcinoma | 8.96e-12 | 106 |
organ system cancer | 5.04e-11 | 137 |
hematologic cancer | 7.36e-10 | 51 |
immune system cancer | 7.36e-10 | 51 |
leukemia | 3.39e-09 | 39 |
myeloid leukemia | 2.24e-08 | 31 |