FFCP PHASE1:Hg19::chr17:46806098..46806118,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:46806098..46806118,- to FFCP PHASE1:Hg19::chr17:46806098..46806118,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10481 | |EntrezGene=10481 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5112 | |HGNC=5112 | ||
|TSSclassifier=strong | |||
|UniProt=Q4KR72,Q92826 | |UniProt=Q4KR72,Q92826 | ||
|association_with_transcript=0bp_to_NM_006361,uc002ioa.2_5end | |||
|cluster_id=chr17:46806098..46806118,- | |||
|coexpression_cluster_id=C2415 | |||
|description=CAGE_peak_3_at_HOXB13_5end | |||
|id=chr17:46806098..46806118,- | |||
|ontology_enrichment_celltype=CL:0000066!2.55e-18!254;CL:0000039!1.39e-07!7;CL:0000586!1.39e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002567;6.35e-09;3!CL:0000148;7.35e-09;10!CL:0002178;3.67e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.63e-12,253;CL:0002567,6.55e-09,3;CL:0000148,7.61e-09,10;CL:0000541,7.61e-09,10;CL:0002178,2.29e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.51e-09;29 | |||
|ontology_enrichment_disease=DOID:14566!3.45e-47!239;DOID:0050687!1.41e-46!143;DOID:162!3.43e-45!235;DOID:305!6.89e-29!106;DOID:0050686!6.39e-12!137;DOID:299!3.86e-11!25;DOID:1115!1.41e-09!20;DOID:3095!4.85e-09!22;DOID:2994!4.85e-09!22 | |||
|ontology_enrichment_disease_v019=DOID:299;5.96e-11;25!DOID:3119;1.88e-09;14!DOID:1115;1.34e-08;20 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.13e-31,143;DOID:14566,3.05e-25,239;DOID:162,9.17e-24,235;DOID:305,4.10e-17,106;DOID:299,4.23e-11,25;DOID:3119,1.23e-09,14;DOID:1115,1.67e-08,20 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.21e-12!9;UBERON:0004921!1.82e-08!129;UBERON:0004185!1.82e-08!129;UBERON:0000077!2.31e-08!130;UBERON:0001264!3.41e-08!10;UBERON:0003922!3.41e-08!10;UBERON:0003923!3.41e-08!10;UBERON:0003924!3.41e-08!10;UBERON:0003921!3.41e-08!10;UBERON:0005910!5.43e-08!6;UBERON:0001046!1.88e-07!19;UBERON:0002114!2.18e-07!12;UBERON:0004119!2.58e-07!169;UBERON:0000925!2.58e-07!169;UBERON:0006595!2.58e-07!169;UBERON:0008947!2.81e-07!38;UBERON:0003258!2.81e-07!38;UBERON:0001045!2.88e-07!11;UBERON:0000365!6.51e-07!5;UBERON:0002075!6.59e-07!18;UBERON:0005409!8.35e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.72e-21;9!UBERON:0001557;4.72e-21;9!UBERON:0001264;7.17e-12;10!UBERON:0005910;1.68e-09;6!UBERON:0002075;1.03e-07;18!UBERON:0000365;1.04e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.60e-21,9;UBERON:0001264,8.00e-12,10;UBERON:0005910,1.28e-09,6;UBERON:0001557,5.04e-09,19;UBERON:0000365,9.87e-08,5;UBERON:0002075,1.00e-07,18;UBERON:0001046,4.59e-07,19 | |||
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| ||
|short_description=p3@HOXB13 | |||
}} | }} |
Latest revision as of 17:41, 15 September 2015
Short description: | p3@HOXB13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXB13_5end |
Coexpression cluster: | C2415_prostate_neuroepithelioma_neuroectodermal_rhabdomyosarcoma_Melanocyte_carcinoid_argyrophil |
Association with transcript: | 0bp_to_NM_006361, uc002ioa.2_5end |
EntrezGene: | HOXB13 |
HGNC: | 5112 |
UniProt: | Q4KR72Q92826 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.63e-12 | 253 |
light melanocyte | 6.55e-09 | 3 |
melanocyte | 7.61e-09 | 10 |
melanoblast | 7.61e-09 | 10 |
epithelial cell of stomach | 2.29e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.60e-21 | 9 |
pancreas | 8.00e-12 | 10 |
transitional epithelium | 1.28e-09 | 6 |
upper respiratory tract | 5.04e-09 | 19 |
urothelium | 9.87e-08 | 5 |
viscus | 1.00e-07 | 18 |
hindgut | 4.59e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.13e-31 | 143 |
disease of cellular proliferation | 3.05e-25 | 239 |
cancer | 9.17e-24 | 235 |
carcinoma | 4.10e-17 | 106 |
adenocarcinoma | 4.23e-11 | 25 |
gastrointestinal system cancer | 1.23e-09 | 14 |
sarcoma | 1.67e-08 | 20 |