FFCP PHASE1:Hg19::chr16:68679261..68679268,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:68679261..68679268,+ to FFCP PHASE1:Hg19::chr16:68679261..68679268,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1001 | |EntrezGene=1001 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1762 | |HGNC=1762 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZX7 | |UniProt=F5GZX7 | ||
|association_with_transcript=57bp_to_ENST00000542274_5end | |||
|cluster_id=chr16:68679261..68679268,+ | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_3_at_CDH3_5end | |||
|id=chr16:68679261..68679268,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.34e-41!254;CL:0002076!3.31e-32!43;CL:0000223!4.26e-23!59;CL:0002251!2.15e-16!21;CL:0002368!2.87e-16!13;CL:0002159!2.95e-16!13;CL:0000076!9.27e-12!62;CL:0002077!9.76e-11!33;CL:0002202!1.07e-10!9;CL:0002632!1.07e-10!9;CL:0002321!1.49e-09!248;CL:0000362!3.54e-09!8;CL:0000240!4.39e-09!6;CL:0000311!4.39e-09!6;CL:0000079!4.39e-09!6;CL:0000237!4.39e-09!6;CL:0000036!4.39e-09!6;CL:0000357!4.39e-09!6;CL:0000114!4.39e-09!6;CL:0000220!8.67e-09!246;CL:0000312!7.73e-08!5;CL:0000244!6.35e-07!4;CL:0000731!6.35e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.05e-30;42!CL:0002368;6.54e-28;13!CL:0002159;2.54e-22;14!CL:0002251;3.88e-19;20!CL:0002202;5.57e-18;9!CL:0002632;5.57e-18;9!CL:0000240;3.34e-11;6!CL:0000311;3.34e-11;6!CL:0000079;3.34e-11;6!CL:0000237;3.34e-11;6!CL:0002077;5.02e-11;34!CL:0000244;5.81e-11;4!CL:0000731;5.81e-11;4!CL:0000362;1.10e-10;9!CL:0002621;2.19e-09;3!CL:0002166;2.38e-09;3!CL:0000307;3.16e-09;3!CL:0000312;4.76e-09;5!CL:0002328;7.95e-09;3!CL:0000076;4.07e-07;63!CL:0002327;6.36e-07;4!CL:0000317;8.20e-07;2!CL:1000448;8.20e-07;2!CL:0002308;8.20e-07;2!CL:0002140;8.20e-07;2!CL:0000575;9.42e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.37e-39,253;CL:0002076,4.52e-39,42;CL:0000223,3.14e-28,58;CL:0002368,6.20e-28,13;CL:0002159,2.01e-22,14;CL:0002251,5.48e-19,20;CL:0002202,4.71e-18,9;CL:0002632,4.71e-18,9;CL:0000076,2.55e-14,63;CL:0002077,1.12e-12,34;CL:0002321,7.20e-12,250;CL:0000240,2.85e-11,6;CL:0000311,2.85e-11,6;CL:0000079,2.85e-11,6;CL:0000237,2.85e-11,6;CL:0000036,2.85e-11,6;CL:0000357,2.85e-11,6;CL:0000114,2.85e-11,6;CL:0000244,4.92e-11,4;CL:0000731,4.92e-11,4;CL:0000362,9.94e-11,9;CL:0002621,2.13e-09,3;CL:0002166,2.32e-09,3;CL:0000068,3.48e-09,3;CL:0000069,3.48e-09,3;CL:0000307,3.48e-09,3;CL:0000377,3.48e-09,3;CL:0000312,4.00e-09,5;CL:0002328,6.98e-09,3;CL:0002327,6.56e-07,4;CL:0000575,8.33e-07,2;CL:0000317,8.80e-07,2;CL:1000448,8.80e-07,2;CL:0002308,8.80e-07,2;CL:0002140,8.80e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000223;4.79e-15;58!CL:0000357;3.34e-11;6!CL:0000114;3.34e-11;6!CL:0000377;3.16e-09;3 | |||
|ontology_enrichment_disease=DOID:1749!6.18e-16!14;DOID:305!2.47e-15!106;DOID:0050687!1.33e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.17e-23;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.94e-24,14;DOID:305,8.06e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.92e-16!169;UBERON:0000925!6.92e-16!169;UBERON:0006595!6.92e-16!169;UBERON:0001004!3.49e-14!72;UBERON:0005153!2.40e-13!37;UBERON:0005157!2.89e-13!51;UBERON:0000065!1.22e-11!53;UBERON:0000464!1.24e-11!104;UBERON:0000344!2.05e-10!12;UBERON:0001007!4.90e-10!155;UBERON:0001555!4.90e-10!155;UBERON:0007026!4.90e-10!155;UBERON:0005178!6.19e-10!34;UBERON:0002224!6.19e-10!34;UBERON:0000077!1.13e-09!130;UBERON:0005181!1.69e-09!35;UBERON:0006554!2.27e-09!44;UBERON:0004807!4.22e-09!28;UBERON:0005911!4.48e-09!82;UBERON:0001008!4.99e-09!45;UBERON:0003101!1.22e-08!22;UBERON:0000079!1.22e-08!22;UBERON:0004921!1.23e-08!129;UBERON:0004185!1.23e-08!129;UBERON:0000161!1.34e-08!35;UBERON:0003064!1.80e-08!37;UBERON:0000466!3.02e-08!126;UBERON:0000064!3.93e-08!219;UBERON:0000365!5.02e-08!5;UBERON:0005177!5.64e-08!107;UBERON:0003729!6.61e-08!5;UBERON:0005156!7.20e-08!59;UBERON:0000990!7.20e-08!59;UBERON:0000915!7.76e-08!52;UBERON:0007196!1.22e-07!14;UBERON:0001558!1.22e-07!14;UBERON:0000072!1.36e-07!46;UBERON:0002048!2.40e-07!22;UBERON:0000117!2.40e-07!22;UBERON:0000171!2.40e-07!22;UBERON:0000170!2.40e-07!22;UBERON:0005597!2.40e-07!22;UBERON:0000118!2.40e-07!22;UBERON:0000922!4.00e-07!612;UBERON:0009569!4.33e-07!113;UBERON:0008947!4.58e-07!38;UBERON:0003258!4.58e-07!38 | |||
|ontology_enrichment_uberon_v019=UBERON:0000344;2.40e-13;20!UBERON:0000486;3.41e-13;12!UBERON:0000365;6.53e-13;5!UBERON:0005911;3.95e-12;36!UBERON:0003729;5.07e-12;13!UBERON:0003350;3.22e-11;8!UBERON:0005910;1.07e-10;6!UBERON:0003343;1.22e-10;4!UBERON:0004785;1.22e-10;4!UBERON:0007196;3.54e-10;15!UBERON:0001558;3.54e-10;15!UBERON:0001949;2.19e-09;3!UBERON:0003929;2.35e-09;7!UBERON:0000485;5.49e-09;7!UBERON:0004815;7.95e-09;3!UBERON:0002031;7.95e-09;3!UBERON:0004807;3.44e-08;22!UBERON:0000161;1.17e-07;19!UBERON:0000166;1.17e-07;19!UBERON:0000974;4.39e-07;6!UBERON:0001708;4.40e-07;4!UBERON:0008895;4.40e-07;4!UBERON:0001911;6.36e-07;4!UBERON:0002419;8.20e-07;2!UBERON:0007771;8.20e-07;2!UBERON:0003297;8.20e-07;2!UBERON:0001821;8.20e-07;2!UBERON:0003487;8.20e-07;2!UBERON:0001820;8.20e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.79e-13,20;UBERON:0000365,5.69e-13,5;UBERON:0003729,5.61e-12,13;UBERON:0003350,3.48e-11,8;UBERON:0005910,9.57e-11,6;UBERON:0004119,1.44e-10,160;UBERON:0000925,1.44e-10,160;UBERON:0006595,1.44e-10,160;UBERON:0003343,1.45e-10,4;UBERON:0004785,1.45e-10,4;UBERON:0001004,2.26e-10,74;UBERON:0003102,3.19e-10,99;UBERON:0007196,3.22e-10,15;UBERON:0001558,3.22e-10,15;UBERON:0001949,2.13e-09,3;UBERON:0004815,6.98e-09,3;UBERON:0002031,6.98e-09,3;UBERON:0001708,4.32e-07,4;UBERON:0008895,4.32e-07,4;UBERON:0001911,6.56e-07,4;UBERON:0005333,6.56e-07,4;UBERON:0008425,6.56e-07,4;UBERON:0005311,6.56e-07,4;UBERON:0000485,6.56e-07,9;UBERON:0002419,8.80e-07,2;UBERON:0007771,8.80e-07,2;UBERON:0003297,8.80e-07,2;UBERON:0001821,8.80e-07,2;UBERON:0003487,8.80e-07,2;UBERON:0001820,8.80e-07,2;UBERON:0005089,8.80e-07,2;UBERON:0005088,8.80e-07,2 | |||
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| ||
|short_description=p3@CDH3 | |||
}} | }} |
Latest revision as of 14:03, 17 September 2015
Short description: | p3@CDH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDH3_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 57bp_to_ENST00000542274_5end |
EntrezGene: | CDH3 |
HGNC: | 1762 |
UniProt: | F5GZX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucosa | 2.79e-13 | 20 |
urothelium | 5.69e-13 | 5 |
mouth mucosa | 5.61e-12 | 13 |
epithelium of mucosa | 3.48e-11 | 8 |
transitional epithelium | 9.57e-11 | 6 |
endoderm-derived structure | 1.44e-10 | 160 |
endoderm | 1.44e-10 | 160 |
presumptive endoderm | 1.44e-10 | 160 |
mucosa of oral region | 1.45e-10 | 4 |
respiratory system mucosa | 1.45e-10 | 4 |
respiratory system | 2.26e-10 | 74 |
surface structure | 3.19e-10 | 99 |
tracheobronchial tree | 3.22e-10 | 15 |
lower respiratory tract | 3.22e-10 | 15 |
gingival epithelium | 2.13e-09 | 3 |
lower respiratory tract epithelium | 6.98e-09 | 3 |
epithelium of bronchus | 6.98e-09 | 3 |
jaw skeleton | 4.32e-07 | 4 |
splanchnocranium | 4.32e-07 | 4 |
mammary gland | 6.56e-07 | 4 |
mammary bud | 6.56e-07 | 4 |
mammary ridge | 6.56e-07 | 4 |
mammary placode | 6.56e-07 | 4 |
simple columnar epithelium | 6.56e-07 | 9 |
skin gland | 8.80e-07 | 2 |
epidermis gland | 8.80e-07 | 2 |
gland of integumental system | 8.80e-07 | 2 |
sebaceous gland | 8.80e-07 | 2 |
skin sebaceous gland | 8.80e-07 | 2 |
sweat gland | 8.80e-07 | 2 |
sweat gland placode | 8.80e-07 | 2 |
sebaceous gland placode | 8.80e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.94e-24 | 14 |
carcinoma | 8.06e-09 | 106 |