FFCP PHASE1:Hg19::chr16:20911978..20911991,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:20911978..20911991,+ to FFCP PHASE1:Hg19::chr16:20911978..20911991,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57149 | |EntrezGene=57149 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25074 | |HGNC=25074 | ||
|TSSclassifier=strong | |||
|UniProt=O43325 | |UniProt=O43325 | ||
|association_with_transcript=-83bp_to_ENST00000219168,ENST00000412082,NM_001128301,NM_001128302,uc002dia.3,uc010bwl.2,uc010bwm.2_5end | |||
|cluster_id=chr16:20911978..20911991,+ | |||
|coexpression_cluster_id=C3543 | |||
|description=CAGE_peak_10_at_LYRM1_5end | |||
|id=chr16:20911978..20911991,+ | |||
|ontology_enrichment_celltype=CL:0002139!2.14e-11!24;CL:0000071!3.55e-09!18;CL:0002546!3.55e-09!18;CL:0000115!1.39e-07!35;CL:0002078!1.49e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:0000136;5.95e-22;13!CL:0002139;5.52e-16;24!CL:0000115;4.12e-13;36!CL:0000071;7.77e-11;18!CL:0002615;2.87e-08;3!CL:0002618;4.41e-08;3!CL:0002078;3.96e-07;45!CL:0002138;6.05e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.02e-18,15;CL:0002139,1.97e-16,24;CL:0000115,4.14e-15,36;CL:0002078,3.59e-11,45;CL:0000071,3.77e-11,18;CL:0002546,3.77e-11,18;CL:0000213,7.39e-09,58;CL:0000215,7.39e-09,58;CL:0002615,3.08e-08,3;CL:0002618,4.20e-08,3;CL:0005020,4.45e-07,6;CL:0002138,4.45e-07,6;CL:0005022,4.45e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;7.77e-11;18!CL:0005022;6.05e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.01e-09!659;UBERON:0004872!2.05e-09!84;UBERON:0001986!3.55e-09!18;UBERON:0004638!3.55e-09!18;UBERON:0004852!3.55e-09!18;UBERON:0000055!1.25e-08!69;UBERON:0002049!1.85e-08!79;UBERON:0007798!1.85e-08!79;UBERON:0004111!2.04e-08!241;UBERON:0000467!4.28e-08!625;UBERON:0001981!5.74e-08!60;UBERON:0007500!5.74e-08!60;UBERON:0004537!5.74e-08!60;UBERON:0006965!5.74e-08!60;UBERON:0000480!6.00e-08!626;UBERON:0000477!7.60e-08!286;UBERON:0001009!9.15e-08!113;UBERON:0006914!9.59e-08!25;UBERON:0000119!1.14e-07!312;UBERON:0000483!2.07e-07!309;UBERON:0004535!3.00e-07!110;UBERON:0000025!3.08e-07!194;UBERON:0000487!8.32e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;7.77e-11;18!UBERON:0001986;7.77e-11;18!UBERON:0004852;7.77e-11;18!UBERON:0000487;1.78e-08;22!UBERON:0006914;3.28e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,3.77e-11,18;UBERON:0001986,3.77e-11,18;UBERON:0004852,3.77e-11,18;UBERON:0000055,1.02e-09,68;UBERON:0000487,1.01e-08,22;UBERON:0002049,8.36e-08,78;UBERON:0007798,8.36e-08,78;UBERON:0006914,2.02e-07,25;UBERON:0007500,4.33e-07,59;UBERON:0001981,4.33e-07,59;UBERON:0004537,4.33e-07,59;UBERON:0006965,4.33e-07,59 | |||
|phase1_expression=2.72517568905835,3.42560838225573,2.67813367782345,2.00146596706261,4.91657203870017,0,2.53299878168311,0,2.61185628199839,0,0,0,0,0,0.331397375727916,1.34465029290355,0,0.730310090387373,0.975865597581014,0.61560529038394,0,0,0.286235987131057,0.547497700291537,0.627713197974014,0,0,0,0,0,0,0,0,0.369754010166788,0,0.284338464974843,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,2.01384674625505,0.256160706529101,1.18241114944293,0,0,0,0,0,0,1.22433556948361,0,0.639337125799041,0,0,0.426224750532694,0.290209238628584,0,0,2.51248665256743,1.0429658368404,0.217188844705117,0,0,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0.560508562981536,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2786256184353,0.361439152384566,1.00267582127178,0.289693037921647,0,0,0.189069634328136,0.443458794925128,0.175669571386252,0.261958150995425,0.728590576585084,0,0.649094787309367,0.870648686496336,0.26591592103773,0,0,0,1.59009925893364,2.58070378531837,1.38856200643038,0.56530794192401,0.419499436209906,0.825354125820202,0.626984899610432,0,0.71153252537342,1.67360306382335,1.61131726843659,0.760272105718513,1.22031028774085,0.735326160691737,3.24056779152704,2.94689103337463,2.46982309888787,2.0270066486998,0,1.89853131913626,0.366403487860815,0,0,0,1.49091585508596,0.633152558322899,1.19168262731897,3.15520282823695,0,0.560677600142307,0,0.49333509683432,0.311211035399766,0.404132016209064,0.980771418680752,0,0,0.70296429550139,0,0,0,0.117434498643765,0,0,0.61246251376468,0,0.103325781175765,1.18800285728205,0.494533858557114,0,0,0,0.125118519871964,0.277064115484183,0,0.30648779579902,0.300476117813194,0.567160915800105,0.538168907066586,0.427114777637135,1.05965950579781,0,0.309157587715317,0.515281080091258,0.558350568994769,0.168776332241266,0.194874010322397,0.504867548488229,0.0920498986422993,0.161646056818812,0.355009592516614,0,0.169560592310488,0.193260853163297,0,0.286804595389004,0.121973706129595,0.132529768321485,0.232387885739037,0.10366105501537,0,0,1.56449532329816,0,0,3.25057549622385,0,0,0.168584690078102,0,0,0,0,0.404493924480493,0,0.38474715694639,2.21446636387394,0,1.2347220339942,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0.100528972411631,0,0,0,0,0.579652024875384,0.939269553886573,4.76409277611544,5.55582615091933,8.94194515502612,0,0,0,0.234004265139238,0,0,0,0.141775097242386,0,0,0,0.492663237895943,0.264145302039678,0,0,0.12624243342638,0,0.381988425558278,0,0,0,0.300343057843917,0,0.112131084345361,0.43596006883328,0.2933531432838,0.258543431515556,0,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,0.142977993658148,0.542621605391443,0,0,0.355391948742546,0.791951872933429,0,0,0,0,0,0,0.479249710983165,0,1.42636905040718,0.289562613335158,0.410952645100767,0.358121926479791,0.112085143993527,0.394061520403854,0,0.641715181398742,0,1.30139853857622,0.773288812777695,1.00509759200609,1.27587750330633,0.749007023947182,0,0,0.12269149171914,0,0.271265023699736,0.415941723061614,0.356857977594324,0.630809660135739,0.585707074963566,4.8151375956435,0,1.03473071292505,0,0.368738337083406,0.434418072340414,0,0.343143423810856,0.206768026122887,0,0,0,0,0.30239029332968,0.248107807818777,0,0.561320188866147,1.15325234330131,0,0.64341568457443,0,0,0.177561725313127,0.164254312027618,0.519254429183621,0.116210378459959,0,0.200506470303285,0.276242966807689,0.918515585316854,0.182091168006717,0.786746489756545,0,0.15403067420883,0,0,0,2.27466768141793,0.510281115829547,3.88648648983851,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.412164046590889,0.0915694648183434,0.082509499920588,0,0,0,0.193341436584244,0.308097234229289,0.460511024178389,0.275673144969061,1.28904293841928,0.435050081742686,0.255679882248303,0.356128142586949,0,0,0.255225424989168,0,0.464845549297286,0.31481234683064,0,1.23213432070436,0,0,0.37064843820784,0.286249773483982,0.372158369359667,0.632758849437452,0.38126038784765,0,0,0,0,0,0,0.235624804691373,0,0,0,0,0.487426979262569,0,0.545999645631943,0.565621727814851,0,0,0,0,1.15755106853338,1.31178950409327,0.608731130888112,0.92947049429925,0,0.143411352204052,0.785992328104969,0.7133421029625,0,0.422215270595328,0.658589785919804,0,0,0.0962221127255121,0.670302275535787,0,0.470719003883896,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0.320472213382419,0,0,0,0,0.0711418433484141,0,0.59873811429845,0.766021480529467,0,0,1.96558024679421,0.228234679033192,0,0,0.846458889008016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0.121360521749513,0,0.284136146806413,0,0,0.307160702099232,0,0,0,0.329607748453519,0,0.796991953004279,0.828851746593443,0,0.306806047506464,0,0.311039587661807,0,0,0,1.57829449019094,0,1.11136990144637,0,0.278304294485554,0,0.260427761085233,0,4.34999745260876,0,0,0.472775363535873,0,0,0.173624994933292,0.885741385813839,1.80894657938112,0,0.110579259931225,0.295547618953547,0,0.21787692703798,0.139423744278603,1.07730361905316,0,0,0,0.1086473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| 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| ||
|short_description=p10@LYRM1 | |||
}} | }} |
Latest revision as of 03:09, 25 September 2015
Short description: | p10@LYRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LYRM1_5end |
Coexpression cluster: | C3543_heart_Lymphatic_mature_retinoblastoma_medulla_Renal_Endothelial |
Association with transcript: | -83bp_to_ENST00000219168, ENST00000412082, NM_001128301, NM_001128302, uc002dia.3, uc010bwl.2, uc010bwm.2_5end |
EntrezGene: | LYRM1 |
HGNC: | 25074 |
UniProt: | O43325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.02e-18 | 15 |
endothelial cell of vascular tree | 1.97e-16 | 24 |
endothelial cell | 4.14e-15 | 36 |
meso-epithelial cell | 3.59e-11 | 45 |
blood vessel endothelial cell | 3.77e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.77e-11 | 18 |
lining cell | 7.39e-09 | 58 |
barrier cell | 7.39e-09 | 58 |
adipocyte of omentum tissue | 3.08e-08 | 3 |
endothelial cell of umbilical vein | 4.20e-08 | 3 |
lymphangioblast | 4.45e-07 | 6 |
endothelial cell of lymphatic vessel | 4.45e-07 | 6 |
vascular lymphangioblast | 4.45e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 3.77e-11 | 18 |
endothelium | 3.77e-11 | 18 |
cardiovascular system endothelium | 3.77e-11 | 18 |
vessel | 1.02e-09 | 68 |
simple squamous epithelium | 1.01e-08 | 22 |
vasculature | 8.36e-08 | 78 |
vascular system | 8.36e-08 | 78 |
squamous epithelium | 2.02e-07 | 25 |
epithelial tube open at both ends | 4.33e-07 | 59 |
blood vessel | 4.33e-07 | 59 |
blood vasculature | 4.33e-07 | 59 |
vascular cord | 4.33e-07 | 59 |