FFCP PHASE1:Hg19::chr15:77224045..77224121,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr15:77224045..77224121,+ to FFCP PHASE1:Hg19::chr15:77224045..77224121,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5955 | |EntrezGene=5955 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9935 | |HGNC=9935 | ||
|TSSclassifier=strong | |||
|UniProt=F8WCY5,A8MXP8 | |UniProt=F8WCY5,A8MXP8 | ||
|association_with_transcript=0bp_to_ENST00000320963,ENST00000394883_5end | |||
|cluster_id=chr15:77224045..77224121,+ | |||
|description=CAGE_peak_1_at_RCN2_5end | |||
|id=chr15:77224045..77224121,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.11e-12!180;CL:0002319!3.32e-08!25;CL:0000133!1.77e-07!59;CL:0000221!3.67e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.37e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.32e-08,25;CL:0000133,1.77e-07,59;CL:0000221,2.86e-07,72 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.53e-14!143;DOID:14566!2.46e-13!239;DOID:162!1.10e-12!235;DOID:305!1.15e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.53e-14,143;DOID:14566,2.46e-13,239;DOID:162,1.10e-12,235;DOID:305,1.15e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.68e-14!94;UBERON:0001016!3.68e-14!94;UBERON:0000924!1.37e-12!173;UBERON:0006601!1.37e-12!173;UBERON:0005743!1.65e-12!86;UBERON:0001017!1.81e-12!82;UBERON:0004121!3.76e-12!169;UBERON:0000475!1.81e-11!365;UBERON:0000033!1.20e-09!123;UBERON:0000955!3.26e-09!69;UBERON:0006238!3.26e-09!69;UBERON:0000153!1.74e-08!129;UBERON:0007811!1.74e-08!129;UBERON:0000481!2.02e-07!347;UBERON:0002780!5.56e-07!41;UBERON:0001890!5.56e-07!41;UBERON:0006240!5.56e-07!41;UBERON:0001869!6.16e-07!32;UBERON:0000064!8.20e-07!219;UBERON:0002616!9.46e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.56e-14,89;UBERON:0004121,6.29e-13,171;UBERON:0000924,6.29e-13,171;UBERON:0006601,6.29e-13,171;UBERON:0001017,7.16e-13,81;UBERON:0011216,2.31e-10,223;UBERON:0000955,1.42e-09,68;UBERON:0006238,1.42e-09,68;UBERON:0001049,4.83e-07,56;UBERON:0005068,4.83e-07,56;UBERON:0006241,4.83e-07,56;UBERON:0007135,4.83e-07,56;UBERON:0002780,5.56e-07,41;UBERON:0001890,5.56e-07,41;UBERON:0003080,5.56e-07,41;UBERON:0006240,5.56e-07,41;UBERON:0001869,6.16e-07,32;UBERON:0010314,7.01e-07,132;UBERON:0002346,8.45e-07,86;UBERON:0000073,9.79e-07,53;UBERON:0002616,9.79e-07,53 | |||
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| ||
|short_description=p1@RCN2 | |||
}} | }} |
Latest revision as of 04:51, 19 September 2015
Short description: | p1@RCN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RCN2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000320963, ENST00000394883_5end |
EntrezGene: | RCN2 |
HGNC: | 9935 |
UniProt: | F8WCY5A8MXP8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.32e-08 | 25 |
neurectodermal cell | 1.77e-07 | 59 |
ectodermal cell | 2.86e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.56e-14 | 89 |
ectoderm-derived structure | 6.29e-13 | 171 |
ectoderm | 6.29e-13 | 171 |
presumptive ectoderm | 6.29e-13 | 171 |
central nervous system | 7.16e-13 | 81 |
organ system subdivision | 2.31e-10 | 223 |
brain | 1.42e-09 | 68 |
future brain | 1.42e-09 | 68 |
neural tube | 4.83e-07 | 56 |
neural rod | 4.83e-07 | 56 |
future spinal cord | 4.83e-07 | 56 |
neural keel | 4.83e-07 | 56 |
regional part of forebrain | 5.56e-07 | 41 |
forebrain | 5.56e-07 | 41 |
anterior neural tube | 5.56e-07 | 41 |
future forebrain | 5.56e-07 | 41 |
cerebral hemisphere | 6.16e-07 | 32 |
structure with developmental contribution from neural crest | 7.01e-07 | 132 |
neurectoderm | 8.45e-07 | 86 |
regional part of nervous system | 9.79e-07 | 53 |
regional part of brain | 9.79e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.53e-14 | 143 |
disease of cellular proliferation | 2.46e-13 | 239 |
cancer | 1.10e-12 | 235 |
carcinoma | 1.15e-07 | 106 |