FFCP PHASE1:Hg19::chr14:91884115..91884127,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:91884115..91884127,- to FFCP PHASE1:Hg19::chr14:91884115..91884127,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=440193 | |EntrezGene=440193 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19967 | |HGNC=19967 | ||
|TSSclassifier=strong | |||
|UniProt=Q9P219 | |UniProt=Q9P219 | ||
|association_with_transcript=0bp_to_ENST00000389857_5end | |||
|cluster_id=chr14:91884115..91884127,- | |||
|coexpression_cluster_id=C996 | |||
|description=CAGE_peak_4_at_CCDC88C_5end | |||
|id=chr14:91884115..91884127,- | |||
|ontology_enrichment_celltype=CL:0000838!2.69e-25!52;CL:0000542!2.04e-24!53;CL:0000051!2.04e-24!53;CL:0002087!2.75e-21!119;CL:0000738!8.46e-21!140;CL:0000037!2.03e-20!172;CL:0000566!2.03e-20!172;CL:0000988!4.36e-19!182;CL:0002032!1.25e-18!165;CL:0000837!1.25e-18!165;CL:0002031!1.27e-18!124;CL:0000084!1.31e-18!25;CL:0000827!1.31e-18!25;CL:0000791!1.34e-15!18;CL:0000789!1.34e-15!18;CL:0002420!1.34e-15!18;CL:0002419!1.34e-15!18;CL:0000790!1.34e-15!18;CL:0000625!2.21e-10!11;CL:0002393!2.90e-07!9;CL:0002397!2.90e-07!9;CL:0000945!7.24e-07!24;CL:0000826!7.24e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.74e-39;18!CL:0000789;7.74e-39;18!CL:0002419;7.74e-39;18!CL:0000084;3.54e-30;25!CL:0000625;8.78e-26;11!CL:0000624;2.98e-17;6!CL:0000542;1.42e-15;53!CL:0000623;1.85e-10;3!CL:0000226;4.58e-10;3!CL:0000842;4.58e-10;3!CL:0000898;5.29e-09;3!CL:0000767;1.09e-08;3!CL:0002087;2.05e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.90e-39,18;CL:0000789,1.90e-39,18;CL:0002420,1.90e-39,18;CL:0002419,1.90e-39,18;CL:0000790,1.90e-39,18;CL:0000084,1.69e-30,25;CL:0000827,1.69e-30,25;CL:0000838,1.29e-26,52;CL:0000625,4.65e-26,11;CL:0000542,5.50e-26,53;CL:0000051,5.50e-26,53;CL:0000738,2.25e-19,136;CL:0002087,9.08e-19,115;CL:0000624,1.24e-17,6;CL:0000037,6.69e-15,168;CL:0002031,1.03e-13,120;CL:0000988,1.16e-13,177;CL:0002032,1.18e-12,161;CL:0000837,1.18e-12,161;CL:0000623,1.62e-10,3;CL:0000825,1.62e-10,3;CL:0000226,4.55e-10,3;CL:0000842,4.55e-10,3;CL:0000898,2.94e-09,3;CL:0000767,7.24e-09,3 | |||
|ontology_enrichment_development_v019=CL:0000790;7.74e-39;18!CL:0000051;1.42e-15;53!UBERON:0010122;1.95e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.15e-11!15;UBERON:0000179!1.15e-11!15;UBERON:0000463!1.15e-11!15;UBERON:0002193!3.63e-09!112;UBERON:0002390!9.12e-09!102;UBERON:0003061!9.12e-09!102;UBERON:0007023!1.48e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.61e-22;15!UBERON:0000179;8.61e-22;15!UBERON:0000463;8.61e-22;15!UBERON:0000369;2.05e-12;4!UBERON:0002435;2.05e-12;4!UBERON:0000204;2.05e-12;4!UBERON:0002390;3.69e-10;32!UBERON:0005383;4.25e-10;3!UBERON:0005382;4.25e-10;3!UBERON:0001873;1.95e-07;2!UBERON:0009663;4.49e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.60e-22,15;UBERON:0000179,8.60e-22,15;UBERON:0000463,8.60e-22,15;UBERON:0000369,1.46e-12,4;UBERON:0002435,1.46e-12,4;UBERON:0000204,1.46e-12,4;UBERON:0010082,1.46e-12,4;UBERON:0005383,3.69e-10,3;UBERON:0005382,3.69e-10,3;UBERON:0001873,1.84e-07,2;UBERON:0010122,1.84e-07,2;UBERON:0009663,3.72e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0.125542639594803,0.152826811495903,0.246301768349837,0.393553906568396,1.18009283054671,1.91914699048606,1.39334510984468,0,0,0.369754010166788,0.46480320348181,0.568676929949686,0.293600439334847,1.10799081706375,2.00544447470142,2.82114131930607,0.447830948479849,0,0.257575567634187,0.436194716338694,0.377875943688809,0.485168122375632,0.464858073811369,0,0.309706370895104,0,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.376484679085209,0,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0.56738522469114,0,0.75374599577023,0,0.65156653411535,0,0,0,0.845021145247767,0.850417199860174,0.419317291016752,1.01095768031846,0.750884464207532,1.12507910687956,0.570025487482497,0.99458338599545,1.64397738388171,0,0,0,0.426730222566507,0.400395987036012,1.14950487990897,0.661044872784862,0.954053754535364,1.70763890732835,1.17447437874188,2.29363936875137,0,1.12101712596307,0.263384084775077,2.9506465517075,3.93010762749165,3.49522548299166,1.17030546773475,1.62961133316795,0,3.89653456815823,1.00269411196656,2.3568472597987,0.886135578334485,1.89562704635511,1.0247305578054,0.780356085359269,1.31550323682941,0.552700035571697,0.289803085735052,3.11401782640327,1.87278579662799,4.18142095219907,1.24640276967323,1.91610246800961,1.71813722741315,3.28925599625354,0.637130828648193,1.95325036156926,2.85135613334512,3.61380285786655,3.19966527886046,2.49861453104692,1.65744076430812,2.46338399076314,3.02410114837099,6.41856469880418,5.50332734754636,0,0,0.12786256184353,0,0,0,0,0,0,0,0.175669571386252,0.196468613246569,0,0.741568885568859,0,0,0,0.238490624305342,0,0.74291500265913,0.198762407366705,0,0,0.56530794192401,0,0,0.208994966536811,0.516833518338658,0,0.66944122552934,0,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0.673588117878509,0.112611480483322,0,0.949265659568129,0.366403487860815,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0.185176890317059,0,0,0,0.231860809950154,0,0.288732895522148,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0.414656231081544,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,3.94061520403854,6.03757209606648,6.41715181398742,0,0,0.773288812777695,0.167516265334349,1.91381625495949,0,0,0.414415513436035,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,2.68798433959754,3.45142721309787,4.37582986994122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0.43050537267123,0,0.443430153536676,0,1.52234282769651,3.82318603571188,2.84823593587081,1.19115887728894,1.23408681925858,2.59389324477087,4.32025149790492,0.79312517629427,0,0,0,0,0.432807638929335,0.640276590135727,0.478278818186467,0.399158742865633,0,0.423347165447766,0.649243880549111,0,0.228234679033192,0.783399478865116,0,0.169291777801603,0.481764225311099,0,0,0.687010689511529,0,0,0,0.19538809540204,0.556812347790485,0,0,0.66614393599564,0,0.561421621224659,0.146508179271894,0,0.66866030566487,0,0,0,0,0,0.281338832821026,0,0.329607748453519,0,0.398495976502139,0.828851746593443,0.251932747854276,0,0.246169610922139,0,0.0898683511473268,0.179021174675609,0,0.197286811273867,2.3948309234694,0,0,0,0,0.260427761085233,0.174919999992391,0.724999575434793,0.227586896570999,0,0.236387681767936,0,0,0.347249989866585,5.31444831488303,3.85908603601305,0,0.110579259931225,0,0,0,0.139423744278603,0.153900517007594,0,0.23056390438806,0,0.217294743844016,0,0,0,1.02193298195737,0,0,0.225595660617181,0.19606253431774,0,0,0,0,0,0,0.432777279484182,0,0.442287822516696,0,0.296521128680622,0.370691816839509,0.313265848516366,0.134802265961354,0,0.937057782901357,0.547364367646998,0,0,1.18375320854817,1.20990716048664,0,0.252746318513952,0,0,0,0,0,0,0,0,0.347119476670262,0,0.0870592065804026,0.17472666824203,0,0.290268993867255,0,0.0821154570532092,0.0969890164884194,0,0,0.137041924646751,0,0.126621591911757,0,0,0.85381197895741,0.19980960958213,0.144090417154106,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0.410716136675979,1.27746588066972,0,0.525774708558629,0.279282401272254,0,0,0,0,0,0.268733889946905,0,0,0.157566364614447,0.247247575143499,0.13480708770837,0,0.508039992394707,0,0.408610218334727,0.160753148465019,0,0,0,0,0.121499113316049,1.0063040627978,0,0.209818352539992,0.211200673038813,0,0,0,0,0.25426853765475,0,0,0,0,0.082092520749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| ||
|short_description=p4@CCDC88C | |||
}} | }} |
Latest revision as of 13:31, 16 September 2015
Short description: | p4@CCDC88C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CCDC88C_5end |
Coexpression cluster: | C996_CD4_CD8_Natural_CD19_Whole_blood_Peripheral |
Association with transcript: | 0bp_to_ENST00000389857_5end |
EntrezGene: | CCDC88C |
HGNC: | 19967 |
UniProt: | Q9P219 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.90e-39 | 18 |
alpha-beta T cell | 1.90e-39 | 18 |
immature T cell | 1.90e-39 | 18 |
mature T cell | 1.90e-39 | 18 |
immature alpha-beta T cell | 1.90e-39 | 18 |
T cell | 1.69e-30 | 25 |
pro-T cell | 1.69e-30 | 25 |
lymphoid lineage restricted progenitor cell | 1.29e-26 | 52 |
CD8-positive, alpha-beta T cell | 4.65e-26 | 11 |
lymphocyte | 5.50e-26 | 53 |
common lymphoid progenitor | 5.50e-26 | 53 |
leukocyte | 2.25e-19 | 136 |
nongranular leukocyte | 9.08e-19 | 115 |
CD4-positive, alpha-beta T cell | 1.24e-17 | 6 |
hematopoietic stem cell | 6.69e-15 | 168 |
hematopoietic lineage restricted progenitor cell | 1.03e-13 | 120 |
hematopoietic cell | 1.16e-13 | 177 |
hematopoietic oligopotent progenitor cell | 1.18e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.18e-12 | 161 |
natural killer cell | 1.62e-10 | 3 |
pro-NK cell | 1.62e-10 | 3 |
single nucleate cell | 4.55e-10 | 3 |
mononuclear cell | 4.55e-10 | 3 |
naive T cell | 2.94e-09 | 3 |
basophil | 7.24e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 8.60e-22 | 15 |
haemolymphatic fluid | 8.60e-22 | 15 |
organism substance | 8.60e-22 | 15 |
corpus striatum | 1.46e-12 | 4 |
striatum | 1.46e-12 | 4 |
ventral part of telencephalon | 1.46e-12 | 4 |
future corpus striatum | 1.46e-12 | 4 |
caudate-putamen | 3.69e-10 | 3 |
dorsal striatum | 3.69e-10 | 3 |
caudate nucleus | 1.84e-07 | 2 |
future caudate nucleus | 1.84e-07 | 2 |
telencephalic nucleus | 3.72e-07 | 7 |