FFCP PHASE1:Hg19::chr12:89919767..89919802,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:89919767..89919802,+ to FFCP PHASE1:Hg19::chr12:89919767..89919802,+: NSchange) |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:89919767..89919802,+ | |||
|description=CAGE_peak_at_chr12:89919767..89919802,+ | |||
|id=chr12:89919767..89919802,+ | |||
|ontology_enrichment_celltype=CL:0000860!2.93e-18!45;CL:0002057!1.00e-17!42;CL:0000766!3.22e-12!76;CL:0002009!4.40e-12!65;CL:0000557!8.78e-12!71;CL:0002194!1.15e-10!63;CL:0000576!1.15e-10!63;CL:0000040!1.15e-10!63;CL:0000559!1.15e-10!63;CL:0000763!2.14e-10!112;CL:0000049!2.14e-10!112;CL:0000738!2.86e-10!140;CL:0000839!3.93e-10!70;CL:0000037!3.32e-09!172;CL:0000566!3.32e-09!172;CL:0002032!3.38e-09!165;CL:0000837!3.38e-09!165;CL:0002087!8.87e-09!119;CL:0002031!1.49e-08!124;CL:0000988!2.43e-08!182 | |||
|ontology_enrichment_celltype_v019=CL:0002262;1.59e-07;2!CL:0000771;1.59e-07;2!CL:1000398;1.59e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,1.64e-07,2;CL:1000398,1.64e-07,2;CL:0000771,1.87e-07,2;CL:0000860,2.74e-07,42;CL:0002057,2.74e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0005425;9.12e-14;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.64e-17;3!DOID:127;1.64e-17;3!DOID:3371;3.07e-14;1!DOID:4549;3.07e-14;1!DOID:5861;3.07e-14;1!DOID:6496;3.07e-14;1!DOID:0060072;2.21e-13;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,7.09e-18,3;DOID:127,7.09e-18,3;DOID:3371,3.08e-14,1;DOID:4549,3.08e-14,1;DOID:5861,3.08e-14,1;DOID:6496,3.08e-14,1;DOID:0060072,1.18e-13,4 | |||
|ontology_enrichment_uberon=UBERON:0001474!2.56e-09!86;UBERON:0002371!2.79e-09!80;UBERON:0002390!5.38e-09!102;UBERON:0003061!5.38e-09!102;UBERON:0002193!8.55e-08!112;UBERON:0002405!3.53e-07!115;UBERON:0004765!5.52e-07!101;UBERON:0001434!5.52e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;9.12e-14;1!UBERON:0001785;9.12e-14;1!UBERON:0002464;9.12e-14;1!UBERON:0004904;9.12e-14;1!UBERON:0001021;9.12e-14;1!UBERON:0003714;1.59e-07;2!UBERON:0001281;1.59e-07;2!UBERON:0005162;1.59e-07;2!UBERON:0000122;1.59e-07;2!UBERON:0003497;1.59e-07;2!UBERON:0003909;1.59e-07;2!UBERON:0003835;1.59e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,8.58e-14,1;UBERON:0001785,8.58e-14,1;UBERON:0002464,8.58e-14,1;UBERON:0004904,8.58e-14,1;UBERON:0001021,8.58e-14,1;UBERON:0003902,8.58e-14,1;UBERON:0005425,8.58e-14,1;UBERON:0003714,1.54e-07,2;UBERON:0005162,1.54e-07,2;UBERON:0000122,1.54e-07,2;UBERON:0001281,1.64e-07,2;UBERON:0003497,1.64e-07,2;UBERON:0003909,1.64e-07,2;UBERON:0003835,1.64e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0.393364276848904,0,0,0,0,0,0.0774672005803016,0,0,0,0.200544447470142,1.08505435357926,0,0,0,0,0,0.970336244751265,0.464858073811369,0.411167888021826,0.309706370895104,0.28769239232215,0.256160706529101,0.236482229888585,1.37898272294647,0,0,0.188242339542605,0,0.449446968890169,0,0.641858054152187,0.639337125799041,0.659702600373432,0.598390972864896,0.426224750532694,0.870627715885752,0,1.24564449799115,0.502497330513487,0,1.52032191293582,0,0.368277635987565,1.58231193720442,0.422510572623884,0.212604299965044,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0,0.365328307529268,0,0,0,0,0,0.574752439954483,0,0,0.569212969109448,0.587237189370939,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0.276350017785848,0.289803085735052,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0.33472061276467,0,0,0,0.367663080345869,0,0.17859945656816,0,0,0,1.89853131913626,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0.241011029883482,0,0.217879444092406,0,0.134831308160164,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0.0920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0.854592569019785,0.962479855263359,0,0.371606350251437,0.144269212976445,0,0,0,0.383010740264733,0.211673582723883,0,0.842391534340376,0,0,0,0.169291777801603,0.321176150207399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09224469574562,0.111443384277478,0,0,0,0,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0.23056390438806,0.0897576444097721,0.108647371922008,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.163232808159148,0.424059214301822,0.432777279484182,0,0,0,0.296521128680622,0,0,0,0,0.234264445725339,0,0.19566461893209,0,0,0,0,0,0,0.518440956986236,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0,0,0,0.0967563312890851,0,0.164230914106418,0,5.56013598156452,0,0.137041924646751,0.19871461170299,0.0633107959558787,0,0,0,0,0.288180834308212,3.43609788497747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0,0,0.0846733320657845,0,0,0,0,0,0.674921674654501,0.77380195455795,0.0607495566580247,0,0,0.0524545881349981,0.105600336519406,0.717149357331379,0,0,0,0,1.62899880526114,1.72844298240254,0.653174720218818,0,0.574647645245373,0,0.226624183040251,0,0,0.129282956361551,0,0.342173675768659,0,0,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0.295710299979268,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0.79994958341972,0.106691729694141,0,0.567515953566836,0,0,0,0,0.107824811396682,1.10086159299127,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0.455324382702595,0,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.098150233615243,0,0,0,0,0,0.233939463462106,0,0.237840181555137,0.11294608203896,0,0,0,0,0,0.490296643507811,0,0,0,0,0,0.0939839179798536,0,0.0999411559249289,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0.267964130156178,0,0,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0.143444410785353,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0.393364276848904,0,0,0,0,0,0.0774672005803016,0,0,0,0.200544447470142,1.08505435357926,0,0,0,0,0,0.970336244751265,0.464858073811369,0.411167888021826,0.309706370895104,0.28769239232215,0.256160706529101,0.236482229888585,1.37898272294647,0,0,0.188242339542605,0,0.449446968890169,0,0.641858054152187,0.639337125799041,0.659702600373432,0.598390972864896,0.426224750532694,0.870627715885752,0,1.24564449799115,0.502497330513487,0,1.52032191293582,0,0.368277635987565,1.58231193720442,0.422510572623884,0.212604299965044,0.209658645508376,0.112328631146495,0.150176892841506,0,0,0,0.365328307529268,0,0,0,0,0,0.574752439954483,0,0,0.569212969109448,0.587237189370939,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0,0.276350017785848,0.289803085735052,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0.208994966536811,0,0,0.33472061276467,0,0,0,0.367663080345869,0,0.17859945656816,0,0,0,1.89853131913626,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0.151357427644931,0,0.234321431833797,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0.241011029883482,0,0.217879444092406,0,0.134831308160164,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0.256686072559497,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0.215714200818617,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0.0920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0.854592569019785,0.962479855263359,0,0.371606350251437,0.144269212976445,0,0,0,0.383010740264733,0.211673582723883,0,0.842391534340376,0,0,0,0.169291777801603,0.321176150207399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09224469574562,0.111443384277478,0,0,0,0,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0.246169610922139,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0.23056390438806,0.0897576444097721,0.108647371922008,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.163232808159148,0.424059214301822,0.432777279484182,0,0,0,0.296521128680622,0,0,0,0,0.234264445725339,0,0.19566461893209,0,0,0,0,0,0,0.518440956986236,0,0,0,0,0,0.138674673013139,0,0.0979923974143777,0,0,0,0.0967563312890851,0,0.164230914106418,0,5.56013598156452,0,0.137041924646751,0.19871461170299,0.0633107959558787,0,0,0,0,0.288180834308212,3.43609788497747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.0787831823072236,0.0824158583811665,0,0,0.0846733320657845,0,0,0,0,0,0.674921674654501,0.77380195455795,0.0607495566580247,0,0,0.0524545881349981,0.105600336519406,0.717149357331379,0,0,0,0,1.62899880526114,1.72844298240254,0.653174720218818,0,0.574647645245373,0,0.226624183040251,0,0,0.129282956361551,0,0.342173675768659,0,0,0.157204305099666,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0.295710299979268,0.159296767163702,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0.79994958341972,0.106691729694141,0,0.567515953566836,0,0,0,0,0.107824811396682,1.10086159299127,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,1.42769420259154,0.0981477185010256,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0.455324382702595,0,0.115233987555779,0,0.0679697329768317,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0.098150233615243,0,0,0,0,0,0.233939463462106,0,0.237840181555137,0.11294608203896,0,0,0,0,0,0.490296643507811,0,0,0,0,0,0.0939839179798536,0,0.0999411559249289,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0.267964130156178,0,0,0,0,0.0645889098360061,0,0.112131862580613,0,0,0,0,0,0.143444410785353,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr12:89919767..89919802,+ | |||
}} | }} |
Latest revision as of 13:17, 24 July 2015
Short description: | p@chr12:89919767..89919802, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:89919767..89919802, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 1.64e-07 | 2 |
endothelial cell of hepatic sinusoid | 1.64e-07 | 2 |
eosinophil | 1.87e-07 | 2 |
classical monocyte | 2.74e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.74e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 8.58e-14 | 1 |
cranial nerve | 8.58e-14 | 1 |
nerve trunk | 8.58e-14 | 1 |
nerve connecting eye with brain | 8.58e-14 | 1 |
nerve | 8.58e-14 | 1 |
retinal neural layer | 8.58e-14 | 1 |
presumptive neural retina | 8.58e-14 | 1 |
neural tissue | 1.54e-07 | 2 |
multi cell component structure | 1.54e-07 | 2 |
neuron projection bundle | 1.54e-07 | 2 |
hepatic sinusoid | 1.64e-07 | 2 |
abdomen blood vessel | 1.64e-07 | 2 |
sinusoid | 1.64e-07 | 2 |
abdominal segment blood vessel | 1.64e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 7.09e-18 | 3 |
leiomyoma | 7.09e-18 | 3 |
chondrosarcoma | 3.08e-14 | 1 |
extraosseous chondrosarcoma | 3.08e-14 | 1 |
myxoid chondrosarcoma | 3.08e-14 | 1 |
extraskeletal myxoid chondrosarcoma | 3.08e-14 | 1 |
benign neoplasm | 1.18e-13 | 4 |