FFCP PHASE1:Hg19::chr12:56351196..56351222,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-70bp_to_ENST00000549564_5end | |||
|cluster_id=chr12:56351196..56351222,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_7_at_PMEL_5end | |||
|id=chr12:56351196..56351222,- | |||
|ontology_enrichment_celltype=CL:0000147!4.43e-80!14;CL:0000148!6.21e-67!10;CL:0000541!6.21e-67!10;CL:0000710!1.20e-32!20;CL:0000149!7.93e-28!4;CL:0000325!3.57e-27!39;CL:0000075!9.62e-24!27;CL:0002567!1.05e-21!3;CL:0002322!3.22e-21!5;CL:0002586!4.43e-21!3;CL:0002077!4.10e-19!33;CL:0000133!2.20e-16!59;CL:0000333!2.89e-14!41;CL:0000221!2.81e-13!71;CL:0000540!1.30e-10!6;CL:0000031!1.30e-10!6;CL:0000404!1.30e-10!6;CL:0002566!2.52e-08!1;CL:0000047!4.45e-08!8 | |||
|ontology_enrichment_celltype_v019=CL:0000147;1.73e-94;14!CL:0000148;1.05e-80;10!CL:0002567;2.64e-50;3!CL:0000710;2.59e-40;20!CL:0000149;1.26e-37;4!CL:0000075;8.12e-30;27!CL:0002586;1.12e-22;3!CL:0002077;7.13e-21;34!CL:0002566;8.02e-18;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000147,1.93e-94,14;CL:0000148,1.06e-80,10;CL:0000541,1.06e-80,10;CL:0002567,2.64e-50,3;CL:0000710,2.59e-40,20;CL:0000149,1.43e-37,4;CL:0000075,8.12e-30,27;CL:0002077,1.25e-23,34;CL:0002586,1.25e-22,3;CL:0000333,1.26e-18,41;CL:0002566,7.37e-18,1;CL:0000133,5.00e-13,59;CL:0000221,1.14e-10,72 | |||
|ontology_enrichment_development_v019=CL:0000133;2.52e-07;59 | |||
|ontology_enrichment_disease=DOID:1909!6.02e-15!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;8.39e-34;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,7.10e-34,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!4.44e-22!5;UBERON:0005388!4.44e-22!5;UBERON:0001802!4.44e-22!5;UBERON:0001781!4.43e-21!3;UBERON:0001782!4.43e-21!3;UBERON:0005424!4.43e-21!3;UBERON:0000970!2.37e-08!20;UBERON:0002104!6.08e-08!21;UBERON:0000020!3.13e-07!23;UBERON:0001032!6.43e-07!24;UBERON:0004456!6.43e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;7.75e-30;5!UBERON:0005388;7.75e-30;5!UBERON:0001802;7.75e-30;5!UBERON:0001781;1.12e-22;3!UBERON:0001782;1.12e-22;3!UBERON:0010371;4.50e-09;31!UBERON:0000019;2.43e-08;19!UBERON:0000047;2.43e-08;19!UBERON:0004088;2.43e-08;19!UBERON:0010230;2.43e-08;19!UBERON:0000970;5.96e-08;20!UBERON:0002104;1.34e-07;21!UBERON:0001456;1.34e-07;21!UBERON:0000020;5.53e-07;23!UBERON:0007625;7.15e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,5.79e-25,6;UBERON:0005388,5.79e-25,6;UBERON:0001802,5.79e-25,6;UBERON:0001782,1.25e-22,3;UBERON:0005424,1.25e-22,3;UBERON:0001781,3.06e-17,4;UBERON:0000019,6.11e-08,20;UBERON:0000047,6.11e-08,20;UBERON:0010312,6.11e-08,20;UBERON:0004088,6.11e-08,20;UBERON:0010230,6.11e-08,20;UBERON:0003072,6.11e-08,20;UBERON:0004128,6.11e-08,20;UBERON:0003071,6.11e-08,20;UBERON:0000970,1.37e-07,21;UBERON:0002104,1.37e-07,21;UBERON:0001456,2.88e-07,22;UBERON:0007625,7.37e-07,11 | |||
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|short_description=p7@PMEL | |||
}} | }} |
Latest revision as of 09:09, 19 September 2015
Short description: | p7@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_PMEL_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -70bp_to_ENST00000549564_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 1.93e-94 | 14 |
melanocyte | 1.06e-80 | 10 |
melanoblast | 1.06e-80 | 10 |
light melanocyte | 2.64e-50 | 3 |
neurecto-epithelial cell | 2.59e-40 | 20 |
visual pigment cell | 1.43e-37 | 4 |
columnar/cuboidal epithelial cell | 8.12e-30 | 27 |
ecto-epithelial cell | 1.25e-23 | 34 |
retinal pigment epithelial cell | 1.25e-22 | 3 |
migratory neural crest cell | 1.26e-18 | 41 |
dark melanocyte | 7.37e-18 | 1 |
neurectodermal cell | 5.00e-13 | 59 |
ectodermal cell | 1.14e-10 | 72 |
Ontology term | p-value | n |
---|---|---|
retina | 5.79e-25 | 6 |
photoreceptor array | 5.79e-25 | 6 |
posterior segment of eyeball | 5.79e-25 | 6 |
pigmented layer of retina | 1.25e-22 | 3 |
presumptive retinal pigmented epithelium | 1.25e-22 | 3 |
layer of retina | 3.06e-17 | 4 |
camera-type eye | 6.11e-08 | 20 |
simple eye | 6.11e-08 | 20 |
immature eye | 6.11e-08 | 20 |
ocular region | 6.11e-08 | 20 |
eyeball of camera-type eye | 6.11e-08 | 20 |
optic cup | 6.11e-08 | 20 |
optic vesicle | 6.11e-08 | 20 |
eye primordium | 6.11e-08 | 20 |
eye | 1.37e-07 | 21 |
visual system | 1.37e-07 | 21 |
face | 2.88e-07 | 22 |
pigment epithelium of eye | 7.37e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
melanoma | 7.10e-34 | 2 |