FFCP PHASE1:Hg19::chr11:63438836..63438930,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:63438836..63438930,- to FFCP PHASE1:Hg19::chr11:63438836..63438930,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25923 | |EntrezGene=25923 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24526 | |HGNC=24526 | ||
|TSSclassifier=strong | |||
|UniProt=Q6DD88 | |UniProt=Q6DD88 | ||
|association_with_transcript=152bp_to_NM_015459,uc001nxk.1_5end | |||
|cluster_id=chr11:63438836..63438930,- | |||
|description=CAGE_peak_1_at_ATL3_5end | |||
|id=chr11:63438836..63438930,- | |||
|ontology_enrichment_celltype=CL:0000055!2.23e-20!180;CL:0000057!7.98e-18!75;CL:0002371!5.01e-14!591;CL:0000222!1.29e-13!119;CL:0000144!1.42e-11!625;CL:0000048!1.47e-11!430;CL:0000723!4.71e-11!436;CL:0000548!8.56e-11!679;CL:0000004!8.56e-11!679;CL:0000255!8.56e-11!679;CL:0000012!3.49e-10!682;CL:0000680!9.27e-10!57;CL:0000056!9.27e-10!57;CL:0000355!9.27e-10!57;CL:0002620!2.13e-09!23;CL:0000034!5.30e-09!444;CL:0000187!1.10e-08!54;CL:0000136!1.59e-08!15;CL:0000192!3.15e-08!42;CL:0000514!3.15e-08!42;CL:0000359!5.10e-08!32;CL:0002334!5.68e-07!12;CL:0000183!8.77e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.09e-09;23!CL:0000136;1.25e-07;13!CL:0000359;1.66e-07;32!CL:0000057;2.56e-07;73!CL:0000134;2.90e-07;55!CL:0002334;5.58e-07;12!CL:0002320;7.79e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.58e-18,76;CL:0000222,4.68e-14,121;CL:0000048,1.73e-11,427;CL:0000723,5.54e-11,433;CL:0000680,3.89e-10,58;CL:0000056,3.89e-10,58;CL:0000355,3.89e-10,58;CL:0002620,2.13e-09,23;CL:0000187,4.73e-09,55;CL:0000034,6.15e-09,441;CL:0000192,1.30e-08,43;CL:0000514,1.30e-08,43;CL:0000136,1.59e-08,15;CL:0000359,5.10e-08,32;CL:0002334,5.68e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.44e-13!448;UBERON:0004120!2.44e-13!448;UBERON:0006603!2.44e-13!448;UBERON:0000914!1.09e-12!83;UBERON:0002329!1.09e-12!83;UBERON:0003077!1.09e-12!83;UBERON:0003059!1.09e-12!83;UBERON:0007282!1.09e-12!83;UBERON:0009618!1.09e-12!83;UBERON:0007285!1.09e-12!83;UBERON:0000055!1.35e-12!69;UBERON:0004872!1.83e-12!84;UBERON:0003102!6.93e-12!95;UBERON:0002049!1.01e-11!79;UBERON:0007798!1.01e-11!79;UBERON:0001981!1.46e-11!60;UBERON:0007500!1.46e-11!60;UBERON:0004537!1.46e-11!60;UBERON:0006965!1.46e-11!60;UBERON:0004535!1.80e-10!110;UBERON:0001637!2.97e-10!42;UBERON:0003509!2.97e-10!42;UBERON:0004572!2.97e-10!42;UBERON:0000486!5.04e-10!82;UBERON:0004290!7.37e-10!70;UBERON:0001009!8.10e-10!113;UBERON:0004573!2.77e-09!33;UBERON:0004571!2.77e-09!33;UBERON:0002385!1.17e-08!63;UBERON:0001015!1.17e-08!63;UBERON:0000383!1.17e-08!63;UBERON:0001134!2.39e-08!61;UBERON:0002036!2.39e-08!61;UBERON:0003082!2.39e-08!61;UBERON:0002199!6.46e-08!45;UBERON:0002416!6.46e-08!45;UBERON:0002204!9.25e-08!167;UBERON:0005256!1.03e-07!143;UBERON:0002097!3.44e-07!40;UBERON:0002100!5.44e-07!216;UBERON:0000490!6.14e-07!138;UBERON:0000468!7.92e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.27e-08;33!UBERON:0004571;1.27e-08;33!UBERON:0001637;1.68e-07;42!UBERON:0003509;1.68e-07;42!UBERON:0004572;1.68e-07;42!UBERON:0007500;6.85e-07;56!UBERON:0001981;6.85e-07;56!UBERON:0004537;6.85e-07;56!UBERON:0002384;8.68e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,8.61e-16,315;UBERON:0004120,8.61e-16,315;UBERON:0006603,8.61e-16,315;UBERON:0003102,2.98e-13,99;UBERON:0000055,1.48e-12,68;UBERON:0004872,2.07e-12,83;UBERON:0002049,1.13e-11,78;UBERON:0007798,1.13e-11,78;UBERON:0007500,1.58e-11,59;UBERON:0001981,1.58e-11,59;UBERON:0004537,1.58e-11,59;UBERON:0006965,1.58e-11,59;UBERON:0004535,2.10e-10,109;UBERON:0000486,2.27e-10,83;UBERON:0001637,2.97e-10,42;UBERON:0003509,2.97e-10,42;UBERON:0004572,2.97e-10,42;UBERON:0002329,3.22e-10,71;UBERON:0003059,3.22e-10,71;UBERON:0007282,3.22e-10,71;UBERON:0004290,3.22e-10,71;UBERON:0009618,3.22e-10,71;UBERON:0007524,7.86e-10,73;UBERON:0001009,9.46e-10,112;UBERON:0003077,1.08e-09,72;UBERON:0007285,1.08e-09,72;UBERON:0004573,2.77e-09,33;UBERON:0004571,2.77e-09,33;UBERON:0002385,5.20e-09,64;UBERON:0001015,5.20e-09,64;UBERON:0000383,5.20e-09,64;UBERON:0001134,1.07e-08,62;UBERON:0002036,1.07e-08,62;UBERON:0003082,1.07e-08,62;UBERON:0002204,1.70e-08,167;UBERON:0000490,1.82e-08,148;UBERON:0002199,2.08e-08,46;UBERON:0002416,2.08e-08,46;UBERON:0007503,2.37e-08,78;UBERON:0002097,1.11e-07,41;UBERON:0005256,2.48e-07,122 | |||
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| ||
|short_description=p1@ATL3 | |||
}} | }} |
Latest revision as of 23:54, 18 September 2015
Short description: | p1@ATL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ATL3_5end |
Coexpression cluster: | NA |
Association with transcript: | 152bp_to_NM_015459, uc001nxk.1_5end |
EntrezGene: | ATL3 |
HGNC: | 24526 |
UniProt: | Q6DD88 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.58e-18 | 76 |
mesodermal cell | 4.68e-14 | 121 |
multi fate stem cell | 1.73e-11 | 427 |
somatic stem cell | 5.54e-11 | 433 |
muscle precursor cell | 3.89e-10 | 58 |
myoblast | 3.89e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.89e-10 | 58 |
skin fibroblast | 2.13e-09 | 23 |
muscle cell | 4.73e-09 | 55 |
stem cell | 6.15e-09 | 441 |
smooth muscle cell | 1.30e-08 | 43 |
smooth muscle myoblast | 1.30e-08 | 43 |
fat cell | 1.59e-08 | 15 |
vascular associated smooth muscle cell | 5.10e-08 | 32 |
preadipocyte | 5.68e-07 | 12 |