FF:11574-120E8: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005710 | |DRA_sample_Accession=CAGE@SAMD00005710 | ||
|accession_numbers=CAGE;DRX008376;DRR009248;DRZ000673;DRZ002058 | |accession_numbers=CAGE;DRX008376;DRR009248;DRZ000673;DRZ002058;DRZ012023;DRZ013408 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255 | ||
Line 42: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Neurons%252c%2520donor2.CNhs12726.11574-120E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11574-120E8 | |id=FF:11574-120E8 | ||
|is_a=EFO:0002091;;FF:0000348 | |is_a=EFO:0002091;;FF:0000348 | ||
Line 47: | Line 52: | ||
|library_id=CNhs12726 | |library_id=CNhs12726 | ||
|library_id_phase_based=2:CNhs12726 | |library_id_phase_based=2:CNhs12726 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11574 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11574 | |||
|name=Neurons, donor2 | |name=Neurons, donor2 | ||
|namespace= | |namespace= | ||
Line 54: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |refex=http://refex.dbcls.jp/genelist.php?lang | ||
|repeat_enrich_byfamily=0,0.0672629396841865,0,0,0,0.0672629396841865,0,-0.160318030086386,0,0.0247733832356338,-0.171036865353623,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,-0.0860600706642411,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,-0.054802379546722,0,0,0,0,0,0,0,0,0.0385309030175301,0,0,0.0672629396841865,0.302135515429148,0.0672629396841865,0.0261620777452299,0.0672629396841865,-0.0969923612426051,0,0,0.0281482210476318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0822666837888903,0.0672629396841865,0.0627459241303645,0,0,-0.00698972836767597,0.356917159352473,0.0336314698420933,0.125491848260729,0.0336314698420933,0.176828584828355,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0.125491848260729,0,0,0,0,0,0.0256721683338097,0.0672629396841865,0,0,-0.0280720876140741,0.0059014600158498,0,0,0,0,0,0 | |repeat_enrich_byfamily=0,0.0672629396841865,0,0,0,0.0672629396841865,0,-0.160318030086386,0,0.0247733832356338,-0.171036865353623,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,-0.0860600706642411,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,-0.054802379546722,0,0,0,0,0,0,0,0,0.0385309030175301,0,0,0.0672629396841865,0.302135515429148,0.0672629396841865,0.0261620777452299,0.0672629396841865,-0.0969923612426051,0,0,0.0281482210476318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0822666837888903,0.0672629396841865,0.0627459241303645,0,0,-0.00698972836767597,0.356917159352473,0.0336314698420933,0.125491848260729,0.0336314698420933,0.176828584828355,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0.125491848260729,0,0,0,0,0,0.0256721683338097,0.0672629396841865,0,0,-0.0280720876140741,0.0059014600158498,0,0,0,0,0,0 | ||
|repeat_enrich_byname=0,0.125491848260729,0,0,-0.0980353512377064,0.0672629396841865,0.176828584828355,0.0672629396841865,0.0672629396841865,0,0,0.125491848260729,0.0672629396841865,0.125491848260729,0,0,0.0170676936642342,0.0627459241303645,0.562680752908088,-0.143515142523472,0,0,0.147402770906496,0,0,0,0,0.0672629396841865,0.125491848260729,0.0672629396841865,0.125491848260729,0.905022803697561,0.174015648476583,0,0.12641603323904,0.0336314698420933,0,0.144317381324335,0,0.142449589554007,-0.0827388404517682,0,0.0767991682241805,-0.0683442610773682,0,0,0,0.0672629396841865,0.0129503728551489,0,-0.0536165441095541,-0.0827201683234173,1.02318770681213,0.269365066791572,0.0115504429030045,0,0,0.262212843094269,0.678010335664017,-0.181860530023046,0,0,-0.0881483819097805,0.49155230790531,0,0,0.565161354976476,0,-0.133624814747222,-0.0373605507708085,0,-0.033196512534443,0,0,0,0,0.279857967834071,0,0,0,0.0672629396841865,0,0,0.110997805789315,-0.20149674841824,0,0,0,0,0.088316852303105,0,0.0328605986690738,-0.373286155956567,0.0673505687366425,0.230863760734962,0.308332387563294,0.0598700684197066,0.661789591429115,-0.0372558016722263,-0.0427009999702499,0.530588718053075,0.748471713077684,-0.0644898712891185,0,0.213022530468111,0.649890871521255,0.0989840373192641,-0.208037561654358,0.126985602838352,0.180083369526048,0.0178300702385412,0.125491848260729,0,-0.0102459867951166,0.0713745961324124,0.0672629396841865,-0.140745504333449,-0.0363869056907525,0.413911800870042,0.32273187979474,0.356093656387208,0.300635572549865,0.348027167430803,0.830345580548002,0.181085280751538,0,0.351951876290823,0.130163970781461,0,0.0799948767093572,0.127575507096897,-0.261486420918785,-0.113711714431298,0.0795710519728878,0.0181369969364,-0.0683442610773682,0.836268699987826,0.573786181308872,0.184561203474241,0.0672629396841865,0.165798805611897,-0.125049422085391,0,0,0,0.132008127012824,0.125491848260729,0.160702402674152,-0.0373776842827857,-0.0560269767271899,0.0477632108781174,0.104204272343292,0,-0.035073237258318,0.038654880828311,0.293764963303317,-0.134907821926619,0.247572345817179,0.372145991800126,0.0483084530606862,-0.018507598681087,-0.394526353518965,-0.039498848078274,0.64657137902076,2.19416903352099,-0.164593403384002,0.00661149974383402,-0.137088365994686,-0.72167692510604,0.480178959435917,-0.0208638927911012,0.126820519432538,0.549945659678296,-0.0409763979733918,0.0125992804570656,0.217820621814009,0.0165869150775958,-0.331957438457421,0,-0.0414494460531443,0,-0.076473474611314,-0.0383192927258594,0.352612001739558,-0.324019092689509,0,0.440050209464625,-0.360780744948685,0,-0.0269515027827287,0.0973033306165326,0.264246568949799,0.488154650313493,-0.173270280324046,0.113391363771375,0.0121707598653472,0.0301911594534321,0.24668681327044,0.502114458747381,0.399266295091813,0.422041727307058,-0.168213098080202,0.0672629396841865,0.103001013565043,0.0293188194347364,0.124577730016842,0.00952077482579473,0.125491848260729,0,-0.343564822563577,0.136343802925832,0,0.830235436817236,-0.0287465985701689,0.538618410502248,0.368141696610523,0.190090502443524,0.330209384452637,0,0.478594656587593,-0.110264826280989,0,0.12140824340881,0,0,0.312574708819847,0,0.0672629396841865,0.292604919547306,1.8664913970749,0,0,0.00830642869883039,0.302135515429148,0,0,0,0.049157119822476,-0.229507232275095,0.0725168626088413,0.0672629396841865,-0.233392346960949,0,0,0,0.0672629396841865,0.0672629396841865,0,0.0501867293123515,0,0.0662464572455688,0.0388961764985681,0.179118099752728,0.0627459241303645,0,0,0,0.183542892538338,-0.077744713833995,0.427350192825289,-0.00637085823690292,0,0.0336314698420933,0,0,-0.0188780501050248,0,0,0,0,0.119098127774691,-0.0802264889334115,0,0,0,-0.27695440160179,0,0.00129241787692703,0,0,0.01910445900229,0,0,-0.0104621352891008,0,0.0325883156336793,0.484296650844888,0.119042377219603,-0.205153239881244,-0.257781949617191,-0.010127468199866,0,0.0672629396841865,0.284299366388584,0,0.0336314698420933,-0.432227104179585,0,0,0.281210739483031,0,0,0,0,0.125491848260729,0,1.21917589779692,0,0,0,0,0,0.0672629396841865,0,0,0,0,0.0672629396841865,0.164319666066078,-0.0922240566585104,0,0,0,0.264246568949799,0,0,0,-0.0241060230789031,0.224223577945209,0,0,0,0,0,0,0,0,-0.248692549216603,0,0,0.603717217453663,0,0.0672629396841865,-0.0969923612426051,0,0,0,0,-0.342073730707245,0,0,0.0247733832356338,0,0,0,0,0,0,0,0.00331403728074326,0,0.0672629396841865,0,0,0,0.00217276222528105,0.000389417690033644,0,0,0,0,0,0,0,0.124432996885722,0,0,0,0,-0.113884373708977,0,0,0,-0.0375334451049699,0,-0.160318030086386,0.0672629396841865,0,0,0.0336314698420933,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00461236446698815,-0.518244401179406,0,0.27867101441882,-0.0488705458315006,0,0,0.346572514597399,0,0,0,0,0,0,0.0800262711947925,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0.0778866480636806,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.12850476708855,0,0,0,0,0,0.0581539336322439,-0.15585355618181,0.328534582507705,0.175024000256798,0.0672629396841865,0,0.0672629396841865,0.295983171357735,0.302135515429148,0,0.0141410162263771,0.0672629396841865,0.155956003027738,0,0,0,0,0.13166084768938,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,-0.0860600706642411,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0.0132557340187408,0.0627459241303645,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,0,0.125491848260729,0,0.125491848260729,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0336314698420933,0,0,0,0.0672629396841865,0,-0.0127555285844519,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00616257185858199,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0171136925458406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.425012194254984,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.0264523209007058,0,0,0,0,0,0,0,0,0,0,0.0336314698420933,0,0,-0.186347668604319,0,0,-0.133329251166287,0,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,0.00594276053406013,0,0,0,0,0,0,0,0,0,0,0.0770618060350601,0,0,0,0,0,0,0,0,0.427350192825289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884142924141775,-0.034453282935527,0.0059014600158498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0627459241303645,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.266309783693221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102426362102224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125491848260729,0,0,0.0336314698420933,0,0,0,0,0,0,0,0,0,0,0,0.336982545221503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884142924141775,0,0,0,0,0,0,0.132123284474899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884142924141775,0,0,0.0672629396841865,0,0,0,0,0,0.0945957327445557,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0159186030165671,0,0,0,0,0,0,0,0,0,0,0.125491848260729,0,0,0,0,0,0,0,0.0627459241303645,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,0.0696274901065035,0,0,0,0,0,0,0,0.214286548224502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,0.00989168632453135,0,0.0336314698420933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00191488379371002,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0.176828584828355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0281482210476318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0627459241303645,0,0,0,0.012807941608778,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.228195711315155,0,0.502114458747381,-0.0422874684771159,0,-0.0228810575655845,0,0,0,0,0,0,0.0679199455210239,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0409611084514364,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.212809155638779,0,-0.0699995009808373,-0.0600921433005114,0,0.0672629396841865,-0.149990443312331,0,0,0,0,0,0.0892536738594996,-0.0414041523411343,0.0672629396841865,0,0,0,0,0,0.478102968264055,0,0,0,0,0,0,0,0,0,0,0,0.0104039935215874,0.0326598798345787,0.125491848260729,0.0204300407413887,0,0,-0.292283317110289,0,0,0,0.0295324408871419 | |repeat_enrich_byname=0,0.125491848260729,0,0,-0.0980353512377064,0.0672629396841865,0.176828584828355,0.0672629396841865,0.0672629396841865,0,0,0.125491848260729,0.0672629396841865,0.125491848260729,0,0,0.0170676936642342,0.0627459241303645,0.562680752908088,-0.143515142523472,0,0,0.147402770906496,0,0,0,0,0.0672629396841865,0.125491848260729,0.0672629396841865,0.125491848260729,0.905022803697561,0.174015648476583,0,0.12641603323904,0.0336314698420933,0,0.144317381324335,0,0.142449589554007,-0.0827388404517682,0,0.0767991682241805,-0.0683442610773682,0,0,0,0.0672629396841865,0.0129503728551489,0,-0.0536165441095541,-0.0827201683234173,1.02318770681213,0.269365066791572,0.0115504429030045,0,0,0.262212843094269,0.678010335664017,-0.181860530023046,0,0,-0.0881483819097805,0.49155230790531,0,0,0.565161354976476,0,-0.133624814747222,-0.0373605507708085,0,-0.033196512534443,0,0,0,0,0.279857967834071,0,0,0,0.0672629396841865,0,0,0.110997805789315,-0.20149674841824,0,0,0,0,0.088316852303105,0,0.0328605986690738,-0.373286155956567,0.0673505687366425,0.230863760734962,0.308332387563294,0.0598700684197066,0.661789591429115,-0.0372558016722263,-0.0427009999702499,0.530588718053075,0.748471713077684,-0.0644898712891185,0,0.213022530468111,0.649890871521255,0.0989840373192641,-0.208037561654358,0.126985602838352,0.180083369526048,0.0178300702385412,0.125491848260729,0,-0.0102459867951166,0.0713745961324124,0.0672629396841865,-0.140745504333449,-0.0363869056907525,0.413911800870042,0.32273187979474,0.356093656387208,0.300635572549865,0.348027167430803,0.830345580548002,0.181085280751538,0,0.351951876290823,0.130163970781461,0,0.0799948767093572,0.127575507096897,-0.261486420918785,-0.113711714431298,0.0795710519728878,0.0181369969364,-0.0683442610773682,0.836268699987826,0.573786181308872,0.184561203474241,0.0672629396841865,0.165798805611897,-0.125049422085391,0,0,0,0.132008127012824,0.125491848260729,0.160702402674152,-0.0373776842827857,-0.0560269767271899,0.0477632108781174,0.104204272343292,0,-0.035073237258318,0.038654880828311,0.293764963303317,-0.134907821926619,0.247572345817179,0.372145991800126,0.0483084530606862,-0.018507598681087,-0.394526353518965,-0.039498848078274,0.64657137902076,2.19416903352099,-0.164593403384002,0.00661149974383402,-0.137088365994686,-0.72167692510604,0.480178959435917,-0.0208638927911012,0.126820519432538,0.549945659678296,-0.0409763979733918,0.0125992804570656,0.217820621814009,0.0165869150775958,-0.331957438457421,0,-0.0414494460531443,0,-0.076473474611314,-0.0383192927258594,0.352612001739558,-0.324019092689509,0,0.440050209464625,-0.360780744948685,0,-0.0269515027827287,0.0973033306165326,0.264246568949799,0.488154650313493,-0.173270280324046,0.113391363771375,0.0121707598653472,0.0301911594534321,0.24668681327044,0.502114458747381,0.399266295091813,0.422041727307058,-0.168213098080202,0.0672629396841865,0.103001013565043,0.0293188194347364,0.124577730016842,0.00952077482579473,0.125491848260729,0,-0.343564822563577,0.136343802925832,0,0.830235436817236,-0.0287465985701689,0.538618410502248,0.368141696610523,0.190090502443524,0.330209384452637,0,0.478594656587593,-0.110264826280989,0,0.12140824340881,0,0,0.312574708819847,0,0.0672629396841865,0.292604919547306,1.8664913970749,0,0,0.00830642869883039,0.302135515429148,0,0,0,0.049157119822476,-0.229507232275095,0.0725168626088413,0.0672629396841865,-0.233392346960949,0,0,0,0.0672629396841865,0.0672629396841865,0,0.0501867293123515,0,0.0662464572455688,0.0388961764985681,0.179118099752728,0.0627459241303645,0,0,0,0.183542892538338,-0.077744713833995,0.427350192825289,-0.00637085823690292,0,0.0336314698420933,0,0,-0.0188780501050248,0,0,0,0,0.119098127774691,-0.0802264889334115,0,0,0,-0.27695440160179,0,0.00129241787692703,0,0,0.01910445900229,0,0,-0.0104621352891008,0,0.0325883156336793,0.484296650844888,0.119042377219603,-0.205153239881244,-0.257781949617191,-0.010127468199866,0,0.0672629396841865,0.284299366388584,0,0.0336314698420933,-0.432227104179585,0,0,0.281210739483031,0,0,0,0,0.125491848260729,0,1.21917589779692,0,0,0,0,0,0.0672629396841865,0,0,0,0,0.0672629396841865,0.164319666066078,-0.0922240566585104,0,0,0,0.264246568949799,0,0,0,-0.0241060230789031,0.224223577945209,0,0,0,0,0,0,0,0,-0.248692549216603,0,0,0.603717217453663,0,0.0672629396841865,-0.0969923612426051,0,0,0,0,-0.342073730707245,0,0,0.0247733832356338,0,0,0,0,0,0,0,0.00331403728074326,0,0.0672629396841865,0,0,0,0.00217276222528105,0.000389417690033644,0,0,0,0,0,0,0,0.124432996885722,0,0,0,0,-0.113884373708977,0,0,0,-0.0375334451049699,0,-0.160318030086386,0.0672629396841865,0,0,0.0336314698420933,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00461236446698815,-0.518244401179406,0,0.27867101441882,-0.0488705458315006,0,0,0.346572514597399,0,0,0,0,0,0,0.0800262711947925,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0.0778866480636806,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.12850476708855,0,0,0,0,0,0.0581539336322439,-0.15585355618181,0.328534582507705,0.175024000256798,0.0672629396841865,0,0.0672629396841865,0.295983171357735,0.302135515429148,0,0.0141410162263771,0.0672629396841865,0.155956003027738,0,0,0,0,0.13166084768938,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,-0.0860600706642411,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0.0132557340187408,0.0627459241303645,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,0,0.125491848260729,0,0.125491848260729,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0336314698420933,0,0,0,0.0672629396841865,0,-0.0127555285844519,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00616257185858199,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0171136925458406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.425012194254984,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.0264523209007058,0,0,0,0,0,0,0,0,0,0,0.0336314698420933,0,0,-0.186347668604319,0,0,-0.133329251166287,0,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,0.00594276053406013,0,0,0,0,0,0,0,0,0,0,0.0770618060350601,0,0,0,0,0,0,0,0,0.427350192825289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884142924141775,-0.034453282935527,0.0059014600158498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0627459241303645,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.266309783693221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102426362102224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125491848260729,0,0,0.0336314698420933,0,0,0,0,0,0,0,0,0,0,0,0.336982545221503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884142924141775,0,0,0,0,0,0,0.132123284474899,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884142924141775,0,0,0.0672629396841865,0,0,0,0,0,0.0945957327445557,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0159186030165671,0,0,0,0,0,0,0,0,0,0,0.125491848260729,0,0,0,0,0,0,0,0.0627459241303645,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,0.0696274901065035,0,0,0,0,0,0,0,0.214286548224502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0.0336314698420933,0,0,0,0,0,0.00989168632453135,0,0.0336314698420933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00191488379371002,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0.176828584828355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0281482210476318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0627459241303645,0,0,0,0.012807941608778,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.228195711315155,0,0.502114458747381,-0.0422874684771159,0,-0.0228810575655845,0,0,0,0,0,0,0.0679199455210239,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0409611084514364,0,0,0,0,0,0,0.0672629396841865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.212809155638779,0,-0.0699995009808373,-0.0600921433005114,0,0.0672629396841865,-0.149990443312331,0,0,0,0,0,0.0892536738594996,-0.0414041523411343,0.0672629396841865,0,0,0,0,0,0.478102968264055,0,0,0,0,0,0,0,0,0,0,0,0.0104039935215874,0.0326598798345787,0.125491848260729,0.0204300407413887,0,0,-0.292283317110289,0,0,0,0.0295324408871419 | ||
Line 92: | Line 101: | ||
|top_motifs=SOX2:4.05348213867;NKX2-3_NKX2-5:3.39467223967;ADNP_IRX_SIX_ZHX:3.02984321104;T:3.01588172858;POU5F1:2.7423049541;PRRX1,2:2.66331302662;MZF1:2.51104411848;CDC5L:2.47834979718;JUN:2.34142461972;OCT4_SOX2{dimer}:2.32695619756;LEF1_TCF7_TCF7L1,2:2.29482557292;PAX8:2.28521349474;SOX{8,9,10}:2.2744151131;NANOG:2.1514813503;LHX3,4:2.1277349074;SOX17:2.10965035662;FOXM1:1.9769605092;STAT1,3:1.97046762218;TFDP1:1.94532882285;RFX1:1.92092197089;ZFP161:1.86299376352;NHLH1,2:1.86089782143;GFI1:1.85598016355;MED-1{core}:1.83806611076;CUX2:1.72290028678;MTE{core}:1.692212784;NKX6-1,2:1.60561213055;PATZ1:1.55810396099;ARID5B:1.47908639093;NRF1:1.4327579677;ONECUT1,2:1.40368234051;PRDM1:1.36292301559;ZNF143:1.35471397276;GTF2I:1.32753070572;MAZ:1.31988585564;ZIC1..3:1.31932218804;ATF2:1.24386388946;HOX{A4,D4}:1.24123732118;EGR1..3:1.23027783954;PAX5:1.21985999219;ZBTB6:1.21521388116;BREu{core}:1.21322116073;IKZF2:1.19951349092;PAX4:1.17507874221;ZNF384:1.17506370516;FOXD3:1.16755426124;RREB1:1.16138128545;PBX1:1.13548686548;REST:1.13416723052;YY1:1.13337152486;AHR_ARNT_ARNT2:1.1305123237;POU6F1:1.10715908542;DBP:1.10198023136;POU1F1:1.08492486829;POU3F1..4:1.07952131185;FOXP3:1.07383535652;NR1H4:1.06512477996;PAX1,9:1.04782415382;GATA4:1.04372355849;TFAP2B:1.03446225276;NFY{A,B,C}:0.998223187068;SMAD1..7,9:0.985196341634;RBPJ:0.979747228062;SOX5:0.955057990426;LMO2:0.925063995831;TGIF1:0.868231676177;PAX6:0.856388937165;GTF2A1,2:0.824842366754;GCM1,2:0.820270930199;VSX1,2:0.814611889237;KLF4:0.808830298222;GFI1B:0.800688507252;TEF:0.770079497801;MYFfamily:0.765890786834;ZNF423:0.746551913155;CRX:0.711773096121;TLX2:0.700124293114;ELK1,4_GABP{A,B1}:0.696406761609;CDX1,2,4:0.678720083879;HAND1,2:0.671197242229;HOXA9_MEIS1:0.636555553432;ATF4:0.616183265043;HBP1_HMGB_SSRP1_UBTF:0.613845408263;CREB1:0.609796577329;E2F1..5:0.606239539224;HIC1:0.591260806279;RFX2..5_RFXANK_RFXAP:0.588935783263;GZF1:0.551234275072;FOXL1:0.53643547888;POU2F1..3:0.486663640757;XCPE1{core}:0.466194838065;PPARG:0.456236895648;EVI1:0.444494154366;FOXP1:0.408679264615;RORA:0.352240007657;MYB:0.286069679496;NR6A1:0.278779592505;MAFB:0.228428179013;EP300:0.224751341592;FOXQ1:0.219933007327;PAX3,7:0.210432158756;MTF1:0.210368745501;TBP:0.20422448385;HSF1,2:0.198294324321;PDX1:0.164802316398;TLX1..3_NFIC{dimer}:0.155132210012;NKX3-2:0.15165917608;SP1:0.117270107261;EN1,2:0.113657975594;ATF5_CREB3:0.0875669490751;NR3C1:0.0617298818026;UFEwm:0.00296685047141;BPTF:-0.0294141892126;NKX3-1:-0.0480479293429;NFIX:-0.0508311451356;MEF2{A,B,C,D}:-0.0558844055171;MYBL2:-0.0600572807616;NFE2L2:-0.0744993779409;SPZ1:-0.0822401846915;SREBF1,2:-0.13702356205;NANOG{mouse}:-0.144360247086;NFIL3:-0.146673496932;DMAP1_NCOR{1,2}_SMARC:-0.148462535789;HMGA1,2:-0.165612749507;ALX1:-0.173131970638;AR:-0.186144472172;HNF1A:-0.191060049884;XBP1:-0.191689906409;TOPORS:-0.243784358851;FOXN1:-0.267384157206;ESRRA:-0.277964720303;STAT2,4,6:-0.281682625708;ZBTB16:-0.299515429021;GATA6:-0.307929977778;EBF1:-0.314458765761;SRF:-0.317093430141;NFE2L1:-0.318209634296;SPIB:-0.319512788318;NKX2-2,8:-0.327393443666;PAX2:-0.329520389846;bHLH_family:-0.337877459423;FOS_FOS{B,L1}_JUN{B,D}:-0.347782828156;STAT5{A,B}:-0.369610044075;RUNX1..3:-0.36975678427;HNF4A_NR2F1,2:-0.391078457975;AIRE:-0.426758346488;MYOD1:-0.431970706639;FOSL2:-0.441964934717;BACH2:-0.459722704993;IRF7:-0.484265233438;ZEB1:-0.491433985011;FOX{D1,D2}:-0.493594732871;HOX{A5,B5}:-0.494248576523;FOXA2:-0.500175844707;SPI1:-0.50306342661;TP53:-0.508159370688;SNAI1..3:-0.513281556537;FOX{F1,F2,J1}:-0.52117676291;NFE2:-0.537103033369;ATF6:-0.55720658706;TAL1_TCF{3,4,12}:-0.576418459892;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.580802958845;CEBPA,B_DDIT3:-0.61431969721;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.641989020825;IKZF1:-0.660629548467;TEAD1:-0.688061692785;NFKB1_REL_RELA:-0.688369117863;TFAP4:-0.690725068957;TBX4,5:-0.716797645766;PITX1..3:-0.719760614475;TFCP2:-0.738826961728;ALX4:-0.743797108651;ZNF238:-0.757007526043;IRF1,2:-0.776958461648;HLF:-0.794771745526;NKX2-1,4:-0.831003014801;NFATC1..3:-0.842047964211;ETS1,2:-0.876375815606;ESR1:-0.892526826625;FOX{I1,J2}:-0.899843095178;HMX1:-0.953480798596;ZNF148:-0.960641897036;GLI1..3:-0.982699609256;NR5A1,2:-1.01339417062;FOXO1,3,4:-1.01502424641;ELF1,2,4:-1.01665573519;HES1:-1.07137290814;TFAP2{A,C}:-1.42911511653;RXRA_VDR{dimer}:-1.45911386277;HOX{A6,A7,B6,B7}:-1.49292680829;HIF1A:-1.57759173285;RXR{A,B,G}:-1.64486797741 | |top_motifs=SOX2:4.05348213867;NKX2-3_NKX2-5:3.39467223967;ADNP_IRX_SIX_ZHX:3.02984321104;T:3.01588172858;POU5F1:2.7423049541;PRRX1,2:2.66331302662;MZF1:2.51104411848;CDC5L:2.47834979718;JUN:2.34142461972;OCT4_SOX2{dimer}:2.32695619756;LEF1_TCF7_TCF7L1,2:2.29482557292;PAX8:2.28521349474;SOX{8,9,10}:2.2744151131;NANOG:2.1514813503;LHX3,4:2.1277349074;SOX17:2.10965035662;FOXM1:1.9769605092;STAT1,3:1.97046762218;TFDP1:1.94532882285;RFX1:1.92092197089;ZFP161:1.86299376352;NHLH1,2:1.86089782143;GFI1:1.85598016355;MED-1{core}:1.83806611076;CUX2:1.72290028678;MTE{core}:1.692212784;NKX6-1,2:1.60561213055;PATZ1:1.55810396099;ARID5B:1.47908639093;NRF1:1.4327579677;ONECUT1,2:1.40368234051;PRDM1:1.36292301559;ZNF143:1.35471397276;GTF2I:1.32753070572;MAZ:1.31988585564;ZIC1..3:1.31932218804;ATF2:1.24386388946;HOX{A4,D4}:1.24123732118;EGR1..3:1.23027783954;PAX5:1.21985999219;ZBTB6:1.21521388116;BREu{core}:1.21322116073;IKZF2:1.19951349092;PAX4:1.17507874221;ZNF384:1.17506370516;FOXD3:1.16755426124;RREB1:1.16138128545;PBX1:1.13548686548;REST:1.13416723052;YY1:1.13337152486;AHR_ARNT_ARNT2:1.1305123237;POU6F1:1.10715908542;DBP:1.10198023136;POU1F1:1.08492486829;POU3F1..4:1.07952131185;FOXP3:1.07383535652;NR1H4:1.06512477996;PAX1,9:1.04782415382;GATA4:1.04372355849;TFAP2B:1.03446225276;NFY{A,B,C}:0.998223187068;SMAD1..7,9:0.985196341634;RBPJ:0.979747228062;SOX5:0.955057990426;LMO2:0.925063995831;TGIF1:0.868231676177;PAX6:0.856388937165;GTF2A1,2:0.824842366754;GCM1,2:0.820270930199;VSX1,2:0.814611889237;KLF4:0.808830298222;GFI1B:0.800688507252;TEF:0.770079497801;MYFfamily:0.765890786834;ZNF423:0.746551913155;CRX:0.711773096121;TLX2:0.700124293114;ELK1,4_GABP{A,B1}:0.696406761609;CDX1,2,4:0.678720083879;HAND1,2:0.671197242229;HOXA9_MEIS1:0.636555553432;ATF4:0.616183265043;HBP1_HMGB_SSRP1_UBTF:0.613845408263;CREB1:0.609796577329;E2F1..5:0.606239539224;HIC1:0.591260806279;RFX2..5_RFXANK_RFXAP:0.588935783263;GZF1:0.551234275072;FOXL1:0.53643547888;POU2F1..3:0.486663640757;XCPE1{core}:0.466194838065;PPARG:0.456236895648;EVI1:0.444494154366;FOXP1:0.408679264615;RORA:0.352240007657;MYB:0.286069679496;NR6A1:0.278779592505;MAFB:0.228428179013;EP300:0.224751341592;FOXQ1:0.219933007327;PAX3,7:0.210432158756;MTF1:0.210368745501;TBP:0.20422448385;HSF1,2:0.198294324321;PDX1:0.164802316398;TLX1..3_NFIC{dimer}:0.155132210012;NKX3-2:0.15165917608;SP1:0.117270107261;EN1,2:0.113657975594;ATF5_CREB3:0.0875669490751;NR3C1:0.0617298818026;UFEwm:0.00296685047141;BPTF:-0.0294141892126;NKX3-1:-0.0480479293429;NFIX:-0.0508311451356;MEF2{A,B,C,D}:-0.0558844055171;MYBL2:-0.0600572807616;NFE2L2:-0.0744993779409;SPZ1:-0.0822401846915;SREBF1,2:-0.13702356205;NANOG{mouse}:-0.144360247086;NFIL3:-0.146673496932;DMAP1_NCOR{1,2}_SMARC:-0.148462535789;HMGA1,2:-0.165612749507;ALX1:-0.173131970638;AR:-0.186144472172;HNF1A:-0.191060049884;XBP1:-0.191689906409;TOPORS:-0.243784358851;FOXN1:-0.267384157206;ESRRA:-0.277964720303;STAT2,4,6:-0.281682625708;ZBTB16:-0.299515429021;GATA6:-0.307929977778;EBF1:-0.314458765761;SRF:-0.317093430141;NFE2L1:-0.318209634296;SPIB:-0.319512788318;NKX2-2,8:-0.327393443666;PAX2:-0.329520389846;bHLH_family:-0.337877459423;FOS_FOS{B,L1}_JUN{B,D}:-0.347782828156;STAT5{A,B}:-0.369610044075;RUNX1..3:-0.36975678427;HNF4A_NR2F1,2:-0.391078457975;AIRE:-0.426758346488;MYOD1:-0.431970706639;FOSL2:-0.441964934717;BACH2:-0.459722704993;IRF7:-0.484265233438;ZEB1:-0.491433985011;FOX{D1,D2}:-0.493594732871;HOX{A5,B5}:-0.494248576523;FOXA2:-0.500175844707;SPI1:-0.50306342661;TP53:-0.508159370688;SNAI1..3:-0.513281556537;FOX{F1,F2,J1}:-0.52117676291;NFE2:-0.537103033369;ATF6:-0.55720658706;TAL1_TCF{3,4,12}:-0.576418459892;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.580802958845;CEBPA,B_DDIT3:-0.61431969721;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.641989020825;IKZF1:-0.660629548467;TEAD1:-0.688061692785;NFKB1_REL_RELA:-0.688369117863;TFAP4:-0.690725068957;TBX4,5:-0.716797645766;PITX1..3:-0.719760614475;TFCP2:-0.738826961728;ALX4:-0.743797108651;ZNF238:-0.757007526043;IRF1,2:-0.776958461648;HLF:-0.794771745526;NKX2-1,4:-0.831003014801;NFATC1..3:-0.842047964211;ETS1,2:-0.876375815606;ESR1:-0.892526826625;FOX{I1,J2}:-0.899843095178;HMX1:-0.953480798596;ZNF148:-0.960641897036;GLI1..3:-0.982699609256;NR5A1,2:-1.01339417062;FOXO1,3,4:-1.01502424641;ELF1,2,4:-1.01665573519;HES1:-1.07137290814;TFAP2{A,C}:-1.42911511653;RXRA_VDR{dimer}:-1.45911386277;HOX{A6,A7,B6,B7}:-1.49292680829;HIF1A:-1.57759173285;RXR{A,B,G}:-1.64486797741 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11574-120E8;search_select_hide=table117:FF:11574-120E8 | |||
}} | }} |
Latest revision as of 18:10, 4 June 2020
Name: | Neurons, donor2 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs12726 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
ExpandAdditional information |
---|
ExpandCAGE Accession numbers |
---|
ExpandDownload raw sequence, BAM & CTSS |
---|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12726
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12726
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12726
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000348 human neuron samples
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000348 (human neuron samples)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)