FFCP PHASE1:Hg19::chr10:5535798..5535807,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr10:5535798..5535807,- | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_at_chr10:5535798..5535807,- | |||
|id=chr10:5535798..5535807,- | |||
|ontology_enrichment_celltype=CL:0002541!1.61e-16!3;CL:0000039!6.79e-16!7;CL:0000586!6.79e-16!7;CL:0002563!4.78e-13!4;CL:0002253!2.43e-07!2;CL:0002097!4.69e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002563;2.71e-40;4!CL:0002253;5.69e-21;2!CL:0002231;1.83e-14;3!CL:0002076;9.90e-10;42!CL:0002251;5.93e-09;20!CL:0000039;5.08e-07;7!CL:0000586;5.08e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.22e-40,4;CL:0002253,4.66e-21,2;CL:0002231,1.83e-14,3;CL:0002076,2.66e-09,42;CL:0002251,5.70e-09,20;CL:0000039,5.08e-07,7;CL:0000586,5.08e-07,7;CL:0000223,6.14e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:5093!4.93e-27!4;DOID:1612!4.93e-27!4;DOID:1799!4.23e-13!1;DOID:10165!4.23e-13!1;DOID:1798!4.23e-13!1;DOID:170!1.08e-08!6;DOID:0050687!1.89e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:5093;3.42e-11;4!DOID:1612;3.42e-11;4!DOID:299;2.50e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.79e-11,4;DOID:1612,3.79e-11,4;DOID:299,2.50e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0000476!1.61e-16!3;UBERON:0000920!1.61e-16!3;UBERON:0003124!1.37e-15!7;UBERON:0001242!4.78e-13!4;UBERON:0001262!4.78e-13!4;UBERON:0004786!4.78e-13!4;UBERON:0004808!4.78e-13!4;UBERON:0001277!4.78e-13!4;UBERON:0000310!3.38e-11!10;UBERON:0003350!1.27e-10!5;UBERON:0001443!3.14e-10!11;UBERON:0005631!4.48e-08!14;UBERON:0000158!4.48e-08!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;2.71e-40;4!UBERON:0001262;2.71e-40;4!UBERON:0004786;2.71e-40;4!UBERON:0004808;2.71e-40;4!UBERON:0001277;2.71e-40;4!UBERON:0000485;1.44e-23;7!UBERON:0003929;1.44e-23;7!UBERON:0003350;8.98e-21;8!UBERON:0001052;3.42e-11;4!UBERON:0000160;7.75e-10;17!UBERON:0004907;3.22e-09;5!UBERON:0000344;5.93e-09;20!UBERON:0005409;6.52e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,2.22e-40,4;UBERON:0001262,2.22e-40,4;UBERON:0004786,2.22e-40,4;UBERON:0004808,2.22e-40,4;UBERON:0001277,2.22e-40,4;UBERON:0003350,8.12e-21,8;UBERON:0000485,1.24e-18,9;UBERON:0001052,3.10e-11,4;UBERON:0000160,7.42e-10,17;UBERON:0001046,2.36e-09,19;UBERON:0004907,2.97e-09,5;UBERON:0000344,5.70e-09,20;UBERON:0003929,2.12e-07,54;UBERON:0005409,4.02e-07,25 | |||
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|short_description=p@chr10:5535798..5535807,- | |||
}} | }} |
Latest revision as of 14:12, 23 July 2015
Short description: | p@chr10:5535798..5535807, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:5535798..5535807, - |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.22e-40 | 4 |
epithelial cell of large intestine | 4.66e-21 | 2 |
epithelial cell of prostate | 1.83e-14 | 3 |
endo-epithelial cell | 2.66e-09 | 42 |
epithelial cell of alimentary canal | 5.70e-09 | 20 |
germ line cell | 5.08e-07 | 7 |
germ cell | 5.08e-07 | 7 |
endodermal cell | 6.14e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 2.22e-40 | 4 |
wall of intestine | 2.22e-40 | 4 |
gastrointestinal system mucosa | 2.22e-40 | 4 |
gastrointestinal system epithelium | 2.22e-40 | 4 |
intestinal epithelium | 2.22e-40 | 4 |
epithelium of mucosa | 8.12e-21 | 8 |
simple columnar epithelium | 1.24e-18 | 9 |
rectum | 3.10e-11 | 4 |
intestine | 7.42e-10 | 17 |
hindgut | 2.36e-09 | 19 |
lower digestive tract | 2.97e-09 | 5 |
mucosa | 5.70e-09 | 20 |
gut epithelium | 2.12e-07 | 54 |
gastrointestinal system | 4.02e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.79e-11 | 4 |
breast cancer | 3.79e-11 | 4 |
adenocarcinoma | 2.50e-07 | 25 |