FFCP PHASE1:Hg19::chr10:14613932..14613943,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:14613932..14613943,- to FFCP PHASE1:Hg19::chr10:14613932..14613943,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=83641 | |EntrezGene=83641 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23726 | |HGNC=23726 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=54bp_to_ENST00000464952_5end | |||
|cluster_id=chr10:14613932..14613943,- | |||
|coexpression_cluster_id=C2996 | |||
|description=CAGE_peak_9_at_FAM107B_5end | |||
|id=chr10:14613932..14613943,- | |||
|ontology_enrichment_celltype=CL:0000791!4.24e-28!18;CL:0000789!4.24e-28!18;CL:0002420!4.24e-28!18;CL:0002419!4.24e-28!18;CL:0000790!4.24e-28!18;CL:0000625!1.13e-19!11;CL:0000084!1.19e-18!25;CL:0000827!1.19e-18!25;CL:0000624!4.84e-12!6;CL:0000838!1.29e-10!52;CL:0000542!2.67e-10!53;CL:0000051!2.67e-10!53;CL:0000738!2.85e-07!140;CL:0002087!5.50e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.65e-50;18!CL:0000789;7.65e-50;18!CL:0002419;7.65e-50;18!CL:0000084;1.35e-34;25!CL:0000625;3.66e-34;11!CL:0000624;1.98e-20;6!CL:0000898;8.09e-11;3!CL:0000623;9.70e-11;3!CL:0000542;1.88e-10;53!CL:0000815;1.51e-07;2!CL:0000792;1.51e-07;2!CL:0002677;1.51e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.08e-50,18;CL:0000789,7.08e-50,18;CL:0002420,7.08e-50,18;CL:0002419,7.08e-50,18;CL:0000790,7.08e-50,18;CL:0000084,1.28e-34,25;CL:0000827,1.28e-34,25;CL:0000625,3.31e-34,11;CL:0000838,1.44e-20,52;CL:0000624,2.02e-20,6;CL:0000542,4.44e-20,53;CL:0000051,4.44e-20,53;CL:0000898,7.73e-11,3;CL:0000623,1.04e-10,3;CL:0000825,1.04e-10,3;CL:0002087,4.18e-09,115;CL:0000815,1.46e-07,2;CL:0000792,1.46e-07,2;CL:0002677,1.46e-07,2;CL:0000738,6.75e-07,136;CL:0002031,8.50e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;7.65e-50;18!CL:0000051;1.88e-10;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.97e-39!57;UBERON:0005068!5.97e-39!57;UBERON:0006241!5.97e-39!57;UBERON:0007135!5.97e-39!57;UBERON:0007023!4.74e-37!115;UBERON:0002616!4.07e-31!59;UBERON:0002780!3.76e-29!41;UBERON:0001890!3.76e-29!41;UBERON:0006240!3.76e-29!41;UBERON:0001893!4.52e-29!34;UBERON:0002020!5.52e-29!34;UBERON:0003528!5.52e-29!34;UBERON:0003080!3.01e-28!42;UBERON:0002791!8.91e-28!33;UBERON:0001869!3.54e-26!32;UBERON:0000955!4.62e-26!69;UBERON:0006238!4.62e-26!69;UBERON:0001017!2.48e-24!82;UBERON:0000073!5.09e-23!94;UBERON:0001016!5.09e-23!94;UBERON:0005743!1.21e-22!86;UBERON:0003075!1.18e-21!86;UBERON:0007284!1.18e-21!86;UBERON:0002619!2.08e-20!22;UBERON:0002346!3.68e-20!90;UBERON:0001950!6.30e-18!20;UBERON:0000956!2.01e-17!25;UBERON:0000203!2.01e-17!25;UBERON:0003056!9.91e-17!61;UBERON:0002308!5.63e-14!9;UBERON:0000125!5.63e-14!9;UBERON:0000153!1.10e-13!129;UBERON:0007811!1.10e-13!129;UBERON:0002420!1.86e-13!9;UBERON:0007245!1.86e-13!9;UBERON:0010009!1.86e-13!9;UBERON:0010011!1.86e-13!9;UBERON:0000454!1.86e-13!9;UBERON:0000178!1.67e-12!15;UBERON:0000179!1.67e-12!15;UBERON:0000463!1.67e-12!15;UBERON:0000033!2.80e-12!123;UBERON:0003076!1.24e-11!15;UBERON:0003057!1.24e-11!15;UBERON:0009663!4.35e-11!7;UBERON:0002298!2.63e-10!8;UBERON:0004732!1.87e-09!13;UBERON:0000200!5.46e-09!6;UBERON:0004121!8.26e-09!169;UBERON:0001871!1.63e-08!7;UBERON:0000924!2.37e-08!173;UBERON:0006601!2.37e-08!173;UBERON:0004733!5.76e-08!12;UBERON:0002028!5.76e-08!12;UBERON:0007277!5.76e-08!12;UBERON:0000349!5.84e-08!5;UBERON:0000369!8.46e-07!4;UBERON:0002435!8.46e-07!4;UBERON:0000204!8.46e-07!4;UBERON:0010082!8.46e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.37e-18;15!UBERON:0000179;1.37e-18;15!UBERON:0000463;1.37e-18;15!UBERON:0002780;2.90e-09;41!UBERON:0001890;2.90e-09;41!UBERON:0002298;5.57e-09;6!UBERON:0000125;2.42e-08;9!UBERON:0002308;2.42e-08;9!UBERON:0005162;4.26e-08;2!UBERON:0000122;4.26e-08;2!UBERON:0003528;9.06e-08;34!UBERON:0002020;9.06e-08;34!UBERON:0001893;1.36e-07;34!UBERON:0002390;1.63e-07;32!UBERON:0009663;4.10e-07;7!UBERON:0000073;4.78e-07;53!UBERON:0002616;4.78e-07;53!UBERON:0001897;6.52e-07;2!UBERON:0010225;6.52e-07;2!UBERON:0002791;7.88e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.69e-19,15;UBERON:0000179,8.69e-19,15;UBERON:0000463,8.69e-19,15;UBERON:0001049,8.63e-15,56;UBERON:0005068,8.63e-15,56;UBERON:0006241,8.63e-15,56;UBERON:0007135,8.63e-15,56;UBERON:0007023,3.47e-14,114;UBERON:0000073,5.90e-14,53;UBERON:0002616,5.90e-14,53;UBERON:0000955,4.52e-11,68;UBERON:0006238,4.52e-11,68;UBERON:0002780,7.15e-11,41;UBERON:0001890,7.15e-11,41;UBERON:0003080,7.15e-11,41;UBERON:0006240,7.15e-11,41;UBERON:0003075,5.28e-10,82;UBERON:0007284,5.28e-10,82;UBERON:0001017,7.39e-10,81;UBERON:0001016,1.30e-09,89;UBERON:0002346,2.48e-09,86;UBERON:0002298,5.70e-09,6;UBERON:0000125,2.66e-08,9;UBERON:0002308,2.66e-08,9;UBERON:0001893,2.92e-08,34;UBERON:0003528,3.18e-08,34;UBERON:0002020,3.18e-08,34;UBERON:0005162,4.56e-08,2;UBERON:0000122,4.56e-08,2;UBERON:0003056,1.28e-07,61;UBERON:0002791,3.30e-07,32;UBERON:0009663,4.82e-07,7;UBERON:0010371,5.75e-07,104;UBERON:0001897,6.95e-07,2;UBERON:0010225,6.95e-07,2 | |||
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| ||
|short_description=p9@FAM107B | |||
}} | }} |
Latest revision as of 07:36, 17 September 2015
Short description: | p9@FAM107B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_FAM107B_5end |
Coexpression cluster: | C2996_optic_CD4_corpus_thalamus_globus_spinal_diencephalon |
Association with transcript: | 54bp_to_ENST00000464952_5end |
EntrezGene: | FAM107B |
HGNC: | 23726 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 7.08e-50 | 18 |
alpha-beta T cell | 7.08e-50 | 18 |
immature T cell | 7.08e-50 | 18 |
mature T cell | 7.08e-50 | 18 |
immature alpha-beta T cell | 7.08e-50 | 18 |
T cell | 1.28e-34 | 25 |
pro-T cell | 1.28e-34 | 25 |
CD8-positive, alpha-beta T cell | 3.31e-34 | 11 |
lymphoid lineage restricted progenitor cell | 1.44e-20 | 52 |
CD4-positive, alpha-beta T cell | 2.02e-20 | 6 |
lymphocyte | 4.44e-20 | 53 |
common lymphoid progenitor | 4.44e-20 | 53 |
naive T cell | 7.73e-11 | 3 |
natural killer cell | 1.04e-10 | 3 |
pro-NK cell | 1.04e-10 | 3 |
nongranular leukocyte | 4.18e-09 | 115 |
regulatory T cell | 1.46e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.46e-07 | 2 |
naive regulatory T cell | 1.46e-07 | 2 |
leukocyte | 6.75e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 8.50e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
blood | 8.69e-19 | 15 |
haemolymphatic fluid | 8.69e-19 | 15 |
organism substance | 8.69e-19 | 15 |
neural tube | 8.63e-15 | 56 |
neural rod | 8.63e-15 | 56 |
future spinal cord | 8.63e-15 | 56 |
neural keel | 8.63e-15 | 56 |
adult organism | 3.47e-14 | 114 |
regional part of nervous system | 5.90e-14 | 53 |
regional part of brain | 5.90e-14 | 53 |
brain | 4.52e-11 | 68 |
future brain | 4.52e-11 | 68 |
regional part of forebrain | 7.15e-11 | 41 |
forebrain | 7.15e-11 | 41 |
anterior neural tube | 7.15e-11 | 41 |
future forebrain | 7.15e-11 | 41 |
neural plate | 5.28e-10 | 82 |
presumptive neural plate | 5.28e-10 | 82 |
central nervous system | 7.39e-10 | 81 |
nervous system | 1.30e-09 | 89 |
neurectoderm | 2.48e-09 | 86 |
brainstem | 5.70e-09 | 6 |
neural nucleus | 2.66e-08 | 9 |
nucleus of brain | 2.66e-08 | 9 |
telencephalon | 2.92e-08 | 34 |
brain grey matter | 3.18e-08 | 34 |
gray matter | 3.18e-08 | 34 |
multi cell component structure | 4.56e-08 | 2 |
neuron projection bundle | 4.56e-08 | 2 |
pre-chordal neural plate | 1.28e-07 | 61 |
regional part of telencephalon | 3.30e-07 | 32 |
telencephalic nucleus | 4.82e-07 | 7 |
ecto-epithelium | 5.75e-07 | 104 |
dorsal plus ventral thalamus | 6.95e-07 | 2 |
thalamic complex | 6.95e-07 | 2 |