FF:461-43C1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005309 | ||
| | |accession_numbers=CAGE;DRX009085;DRR009959;DRZ001384;DRZ002767;DRZ012734;DRZ014117 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002106,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000299,FF:0011360 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr19:45225149..45225186,+!p1@Tlx1!2.06!113.93!Tlx1;;chr10:22539932..22539956,-!p1@Tcf21!1.95!225.99!Tcf21;;chr5:42155788..42155800,-!p1@Nkx3-2!1.88!74.71!Nkx3-2;;chr17:26978409..26978442,-!p1@Nkx2-5!1.78!59.65!Nkx2-5;;chr17:26978521..26978536,-!p2@Nkx2-5!1.72!52.01!Nkx2-5;;chr2:164228702..164228719,+!p1@Rbpjl!1.67!45.61!Rbpjl;;chr2:104966766..104966786,+!p1@Wt1!1.51!49.12!Wt1;;chr19:43686789..43686811,+!p1@Nkx2-3!1.44!26.42!Nkx2-3;;chr8:87425854..87425891,+!p1@Klf1!1.43!25.80!Klf1;;chr19:45225276..45225304,+!p2@Tlx1!1.34!20.64!Tlx1;;chr2:19367259..19367278,+!p1@Ptf1a!1.27!17.54!Ptf1a;;chr2:104966874..104966907,+!p2@Wt1!1.23!16.10!Wt1;;chr7:17647736..17647772,-!p1@Hif3a!1.20!51.80!Hif3a;;chr15:103085660..103085681,-!p1@Nfe2!1.17!20.64!Nfe2;;chr1:140739014..140739032,-!p1@Lhx9!1.15!16.51!Lhx9;;chr2:104966933..104966966,+!p3@Wt1!1.15!13.21!Wt1;;chr2:28477452..28477483,-!p1@Gfi1b!1.14!15.69!Gfi1b;;chr11:11584970..11585030,+!p2@Ikzf1!1.09!16.30!Ikzf1;;chrX:7544943..7545001,-!p1@Gata1!1.05!10.11!Gata1;;chr2:38567715..38567730,-!p2@Nr5a1!1.04!9.91!Nr5a1;;chr5:144951153..144951203,+!p1@Bhlha15!1.03!14.24!Bhlha15;;chr6:88143711..88143717,+!p2@Gata2!1.00!14.65!Gata2;;chr13:48758276..48758291,+!p1@Barx1!0.98!8.46!Barx1;;chr8:59799772..59799789,+!p1@Hand2!0.97!24.35!Hand2;;chr2:104966662..104966673,+!p4@Wt1!0.95!7.84!Wt1;;chr10:12810631..12810649,+!p1@Plagl1!0.89!186.16!Plagl1;;chr10:88145766..88145770,-!p1@Spic!0.89!9.08!Spic;;chr13:48758358..48758415,+!p2@Barx1!0.87!6.40!Barx1;;chr8:123608252..123608268,+!p1@Foxf1a!0.86!9.49!Foxf1a;;chr8:90483433..90483457,-!p2@Zfp423!0.86!8.67!Zfp423;;chr2:90936901..90936945,+!p1@Sfpi1!0.85!34.26!Sfpi1;;chr8:87225329..87225396,+!p1@Lyl1!0.85!24.35!Lyl1;;chr15:103085802..103085817,-!p4@Nfe2!0.85!7.64!Nfe2;;chr11:11586218..11586285,+!p1@Ikzf1!0.84!19.81!Ikzf1;;chr17:26978449..26978458,-!p3@Nkx2-5!0.83!5.78!Nkx2-5;;chr5:42155732..42155733,-!p3@Nkx3-2!0.80!5.37!Nkx3-2;;chr12:36219645..36219730,-!p1@Ahr!0.79!55.11!Ahr;;chr4:114732112..114732158,+!p1@Tal1!0.79!11.97!Tal1;;chr14:22807107..22807119,-!p2@Zfp503!0.78!23.73!Zfp503;;chr9:96159147..96159204,+!p2@Tfdp2!0.78!9.91!Tfdp2;;chr4:63064364..63064384,-!p1@Akna!0.77!15.48!Akna;;chr2:90936947..90936977,+!p2@Sfpi1!0.77!10.11!Sfpi1;;chr7:77505617..77505632,-!p1@Nr2f2!0.76!245.39!Nr2f2;;chr2:167363692..167363710,+!p1@Snai1!0.74!60.88!Snai1;;chr7:77511403..77511450,-!p3@Nr2f2!0.74!10.11!Nr2f2;;chr2:90922554..90922575,+!p4@Sfpi1!0.74!8.67!Sfpi1;;chr14:22807216..22807231,-!p3@Zfp503!0.74!8.05!Zfp503;;chr17:26978464..26978469,-!p4@Nkx2-5!0.74!4.54!Nkx2-5;;chr14:22807083..22807104,-!p1@Zfp503!0.73!85.86!Zfp503;;chr16:92826249..92826325,-!p1@Runx1!0.71!10.94!Runx1;;chr15:103082088..103082136,-!p2@Nfe2!0.71!4.13!Nfe2;;chr11:18918917..18918944,-!p1@Meis1!0.70!59.03!Meis1;;chr6:29476690..29476724,+!p1@Irf5!0.70!20.64!Irf5;;chr8:87225670..87225697,+!p2@Lyl1!0.70!13.00!Lyl1;;chr11:18918820..18918831,-!p4@Meis1!0.70!8.26!Meis1;;chr11:96153767..96153822,+!p1@Hoxb6!0.70!6.60!Hoxb6;;chr12:3891810..3891829,+!p2@Dnmt3a!0.70!6.60!Dnmt3a;;chr6:88148650..88148669,+!p1@Gata2!0.69!36.94!Gata2;;chr7:77511234..77511302,-!p2@Nr2f2!0.68!28.69!Nr2f2;;chrX:45245679..45245702,-!p1@Smarca1!0.68!19.19!Smarca1;;chr4:87452200..87452229,-!p2@Mllt3!0.67!8.67!Mllt3;;chr11:18918434..18918489,-!p3@Meis1!0.67!6.19!Meis1;;chr5:42155277..42155281,-!p2@Nkx3-2!0.67!3.71!Nkx3-2;;chr7:17642177..17642223,-!p3@Hif3a!0.67!3.71!Hif3a;;chr7:17642053..17642066,-!p2@Hif3a!0.66!5.37!Hif3a;;chr19:59533221..59533271,+!p1@Emx2!0.66!4.54!Emx2;;chr9:51021788..51021802,+!p1@Pou2af1!0.66!4.33!Pou2af1;;chr15:103085690..103085710,-!p3@Nfe2!0.66!3.92!Nfe2;;chr19:10315179..10315241,-!p1@Gm98!0.65!42.10!Gm98;;chr10:119913278..119913298,-!p2@Hmga2!0.65!8.67!Hmga2;;chr7:89137163..89137200,-!p1@Bnc1!0.65!4.33!Bnc1;;chr7:122989632..122989668,-!p2@Sox6!0.65!3.51!Sox6;;chrX:98449898..98449913,+!p2@Foxo4!0.63!11.97!Foxo4;;chr10:119913546..119913583,-!p3@Hmga2!0.63!7.64!Hmga2;;chr5:77543897..77543911,-!p2@Hopx!0.63!6.81!Hopx;;chr2:104966465..104966479,+!p6@Wt1!0.63!3.30!Wt1;;chr16:14705925..14705951,+!p1@Snai2!0.62!26.62!Snai2;;chr18:55150011..55150059,-!p3@Zfp608!0.62!11.76!Zfp608;;chr7:87170879..87170914,+!p2@Zfp710!0.62!8.26!Zfp710;;chr2:30700788..30700824,+!p2@Prrx2!0.62!5.16!Prrx2;;chr7:52471143..52471186,+!p1@Tead2!0.61!39.01!Tead2;;chr2:169458519..169458555,+!p2@Tshz2!0.61!14.45!Tshz2;;chr18:76219118..76219155,+!p1@Zbtb7c!0.61!5.99!Zbtb7c;;chr4:154010228..154010244,-!p4@Prdm16!0.61!4.54!Prdm16;;chr7:77511622..77511657,-!p5@Nr2f2!0.61!4.13!Nr2f2;;chr2:104966436..104966455,+!p7@Wt1!0.61!3.10!Wt1;;chr4:97444012..97444045,+!p4@Nfia!0.60!26.83!Nfia;;chr19:37509324..37509337,+!p1@Hhex!0.60!25.18!Hhex;;chr6:52154414..52154462,-!p1@Hoxa5!0.60!4.33!Hoxa5;;chr7:17642018..17642045,-!p4@Hif3a!0.60!3.51!Hif3a;;chr10:30562571..30562597,-!p1@Hey2!0.59!7.84!Hey2;;chr8:87225702..87225726,+!p3@Lyl1!0.59!6.60!Lyl1;;chr11:18918406..18918431,-!p6@Meis1!0.59!4.13!Meis1;;chr10:61595830..61595846,+!p1@Neurog3!0.59!2.89!Neurog3;;chr19:43686882..43686906,+!p2@Nkx2-3!0.59!2.89!Nkx2-3;;chr2:105003277..105003280,+!p5@Wt1!0.59!2.89!Wt1;;chr9:32503590..32503680,+!p1@Ets1!0.58!127.55!Ets1;;chr11:16908650..16908690,-!p1@Plek!0.58!20.85!Plek;;chr4:3865501..3865548,-!p1@Plag1!0.58!17.34!Plag1;;chr2:90936978..90937023,+!p3@Sfpi1!0.58!5.99!Sfpi1;;chr13:55932591..55932622,-!p1@Pitx1!0.58!3.51!Pitx1;;chr5:138187341..138187406,+!p3@Tsc22d4!0.57!35.91!Tsc22d4;;chr7:6649134..6649167,-!p1@Zim1!0.57!17.75!Zim1;;chr4:6917606..6917681,-!p1@Tox!0.57!13.62!Tox;;chr8:90483459..90483475,-!p1@Zfp423!0.57!8.67!Zfp423;;chr17:28487603..28487626,-!p2@Tead3!0.57!6.60!Tead3;;chr14:22806778..22806795,-!p5@Zfp503!0.57!3.10!Zfp503;;chr2:163332558..163332596,+!p2@Hnf4a!0.57!2.68!Hnf4a;;chr9:74709695..74709722,+!p1@Onecut1!0.57!2.68!Onecut1;;chr14:64562503..64562524,+!p1@Sox7!0.56!18.78!Sox7;;chr6:52163319..52163342,-!p1@Hoxa3!0.56!4.13!Hoxa3;;chr4:135728181..135728203,+!p2@E2f2!0.56!3.71!E2f2;;chr7:77511311..77511352,-!p4@Nr2f2!0.55!5.99!Nr2f2;;chr7:19608891..19608895,-!p1@Foxa3!0.55!3.51!Foxa3;;chr9:96159225..96159249,+!p5@Tfdp2!0.55!2.89!Tfdp2;;chr2:44968512..44968530,-!p1@Zeb2!0.54!68.73!Zeb2;;chr10:119913310..119913366,-!p1@Hmga2!0.54!24.35!Hmga2;;chr8:123260252..123260264,+!p1@Irf8!0.54!21.67!Irf8;;chr4:97444537..97444555,+!p8@Nfia!0.54!7.22!Nfia;;chr4:135129538..135129558,-!p1@Grhl3!0.54!4.13!Grhl3;;chr7:37483231..37483263,+!p2@Tshz3!0.54!4.13!Tshz3;;chr15:102865088..102865107,+!p1@Hoxc4!0.54!3.51!Hoxc4;;chr15:102844431..102844445,+!p1@Hoxc5!0.54!2.48!Hoxc5;;chr4:44723559..44723593,-!p1@Pax5!0.54!2.48!Pax5;;chr7:122989594..122989626,-!p1@Sox6!0.54!2.48!Sox6;;chr2:169458192..169458247,+!p1@Tshz2!0.53!26.83!Tshz2;;chr2:162880327..162880385,+!p2@Mybl2!0.53!20.02!Mybl2;;chr4:62626594..62626651,+!p1@Zfp618!0.53!11.14!Zfp618;;chr6:15135456..15135520,+!p3@Foxp2!0.53!5.99!Foxp2;;chr2:92886587..92886622,-!p3@Prdm11!0.53!3.92!Prdm11;;chr11:96143666..96143725,+!p1@Hoxb8!0.53!2.89!Hoxb8;;chr11:18918959..18918976,-!p2@Meis1!0.52!40.45!Meis1;;chr6:72739185..72739232,-!p1@Tcf7l1!0.52!30.96!Tcf7l1;;chr19:28754692..28754757,-!p1@Glis3!0.51!11.56!Glis3;;chrX:45245644..45245666,-!p2@Smarca1!0.51!8.87!Smarca1;;chr10:119914001..119914078,-!p4@Hmga2!0.51!3.30!Hmga2;;chr11:52096066..52096081,-!p2@Tcf7!0.51!2.89!Tcf7;;chr2:147871627..147871641,-!p1@Foxa2!0.51!2.27!Foxa2;;chr2:152223441..152223465,-!p2@Sox12!0.50!11.35!Sox12;;chr2:91864300..91864379,-!p2@Creb3l1!0.50!7.64!Creb3l1;;chr3:135271185..135271254,-!p4@Nfkb1!0.50!4.54!Nfkb1;;chr11:70043257..70043263,-!p1@Bcl6b!0.50!4.33!Bcl6b;;chr13:48356475..48356492,+!p1@Id4!0.49!60.47!Id4;;chr19:26822880..26822964,+!p2@Smarca2!0.49!23.32!Smarca2;;chr1:4483679..4483695,-!p1@Sox17!0.49!12.59!Sox17;;chr15:102865131..102865151,+!p2@Hoxc4!0.49!2.48!Hoxc4;;chr2:44968775..44968795,-!p4@Zeb2!0.48!12.38!Zeb2;;chr4:154010918..154010931,-!p1@Prdm16!0.48!7.43!Prdm16;;chr14:52935788..52935817,-!p2@Sall2!0.48!5.37!Sall2;;chr2:181406327..181406350,-!p1@Sox18!0.47!82.76!Sox18;;chr12:87027598..87027652,+!p1@Batf!0.47!5.57!Batf;;chr10:20880731..20880775,-!p2@Myb!0.47!4.95!Myb;;chr14:56443806..56443848,+!p1@Nfatc4!0.47!4.75!Nfatc4;;chr2:169458799..169458832,+!p5@Tshz2!0.47!3.71!Tshz2;;chr2:90922519..90922544,+!p6@Sfpi1!0.47!2.27!Sfpi1;;chr13:99954640..99954681,+!p1@Zfp366!0.46!8.87!Zfp366;;chr1:186556410..186556424,-!p1@Hlx!0.46!7.64!Hlx;;chr11:98821937..98821987,+!p4@Rara!0.46!5.16!Rara;;chr18:75979866..75979890,+!p3@Zbtb7c!0.46!4.75!Zbtb7c;;chr11:11585678..11585745,+!p5@Ikzf1!0.46!3.10!Ikzf1;;chr6:30908793..30908815,-!p1@Klf14!0.46!1.86!Klf14;;chr10:92773591..92773623,-!p1@Elk3!0.45!57.17!Elk3;;chr12:9581262..9581282,+!p1@Osr1!0.45!30.13!Osr1;;chr2:152223469..152223512,-!p1@Sox12!0.45!12.80!Sox12;;chr2:92886297..92886329,-!p1@Prdm11!0.45!11.35!Prdm11;;chr6:99216488..99216534,-!p2@Foxp1!0.45!6.60!Foxp1;;chr1:120950098..120950132,-!p2@Gli2!0.45!5.16!Gli2;;chr2:153475178..153475196,+!p1@Dnmt3b!0.45!4.75!Dnmt3b;;chr2:27532479..27532509,+!p3@Rxra!0.45!4.54!Rxra;;chr12:3891753..3891801,+!p4@Dnmt3a!0.45!3.51!Dnmt3a;;chr6:16848347..16848391,-!p1@Tfec!0.45!2.68!Tfec;;chr2:91864661..91864686,-!p1@Creb3l1!0.44!54.69!Creb3l1;;chrX:45807329..45807370,-!p1@Elf4!0.44!17.13!Elf4;;chr12:28027561..28027591,-!p1@Sox11!0.44!15.89!Sox11;;chr11:98821749..98821799,+!p2@Rara!0.44!15.07!Rara;;chr15:102301130..102301147,+!p3@Pcbp2!0.44!7.02!Pcbp2;;chr7:37483021..37483078,+!p1@Tshz3!0.44!7.02!Tshz3;;chr2:169458352..169458397,+!p3@Tshz2!0.44!5.57!Tshz2;;chr10:126778916..126778974,-!p1@Gli1!0.44!4.95!Gli1;;chr6:52154386..52154407,-!p2@Hoxa5!0.44!2.48!Hoxa5;;chr1:14746065..14746079,-!p1@Msc!0.44!2.27!Msc;;chr8:118231678..118231692,-!p2@Maf!0.43!21.46!Maf;;chr18:69681439..69681456,+!p7@Tcf4!0.43!5.57!Tcf4;;chr4:87452180..87452196,-!p3@Mllt3!0.43!4.13!Mllt3;;chr11:120491440..120491474,-!p3@Mafg!0.43!2.89!Mafg;;chr17:37139472..37139514,+!p1@Zfp57!0.42!15.69!Zfp57;;chr10:79389784..79389833,+!p1@Arid3a!0.42!12.18!Arid3a;;chr17:35031460..35031518,+!p1@Zbtb12!0.42!1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:76755821..76755835,-!p2@Zfp647!0.16!0.83!Zfp647;;chr17:48015645..48015689,-!p9@Foxp4!0.16!0.83!Foxp4;;chr4:99322820..99322845,+!p1@Foxd3!0.16!0.83!Foxd3;;chr2:91490176..91490193,-!p2@Zfp408!0.16!0.83!Zfp408;;chr5:104183579..104183600,+!p9@Aff1!0.16!0.62!Aff1;;chr2:152223762..152223777,-!p8@Sox12!0.16!0.62!Sox12;;chr11:94981424..94981439,+!p1@Dlx3!0.16!0.62!Dlx3;;chr4:135699731..135699747,+!p1@Id3!0.15!144.47!Id3;;chr17:84587279..84587294,-!p1@Zfp36l2!0.15!134.77!Zfp36l2;;chr15:61817095..61817111,+!p1@Myc!0.15!75.12!Myc;;chr1:15795720..15795756,+!p1@Terf1!0.15!36.53!Terf1;;chr1:170362273..170362317,-!p1@Pbx1!0.15!36.53!Pbx1;;chr10:80889867..80889924,-!p1@Nfic!0.15!35.70!Nfic;;chr3:133207232..133207277,-!p1@Tet2!0.15!35.09!Tet2;;chr7:26035739..26035757,-!p1@Erf!0.15!30.96!Erf;;chr10:80813134..80813211,-!p1@Hmg20b!0.15!23.32!Hmg20b;;chr12:16817746..16817784,+!p1@E2f6!0.15!21.46!E2f6;;chr4:97444297..97444323,+!p2@Nfia!0.15!19.19!Nfia;;chr3:152058955..152059023,+!p1@Gm8261,p1@Zzz3!0.15!15.27!Zzz3;;chr17:23004085..23004108,-!p1@Zfp945!0.15!11.76!Zfp945;;chr7:105851601..105851647,+!p2@Prkrir!0.15!11.14!Prkrir;;chr8:112229478..112229536,+!p1@Zfp821!0.15!10.53!Zfp821;;chr19:26679615..26679646,+!p3@Smarca2!0.15!8.05!Smarca2;;chr7:25039763..25039831,+!p1@Zfp108!0.15!5.37!Zfp108;;chr14:65977459..65977489,+!p3@Zfp395!0.15!3.71!Zfp395;;chr11:102178937..102178956,-!p5@Ubtf!0.15!3.10!Ubtf;;chr9:63605691..63605705,-!p3@Smad3!0.15!2.48!Smad3;;chr16:8672256..8672279,-!p1@Carhsp1,p1@Gm9791!0.15!2.06!Carhsp1;;chr17:27693865..27693877,+!p8@Hmga1-rs1,p9@Hmga1!0.15!1.24!Hmga1;;chr7:56136974..56136989,-!p4@E2f8!0.15!1.24!E2f8;;chr8:87324311..87324316,-!p8@Nfix!0.15!1.24!Nfix;;chr4:133310214..133310231,-!p11@Arid1a!0.15!1.24!Arid1a;;chr12:85559762..85559778,-!p5@C130039O16Rik!0.15!1.24!C130039O16Rik;;chr2:153067138..153067147,-!p3@Plagl2!0.15!1.24!Plagl2;;chr2:156666727..156666753,+!p2@Tgif2!0.15!1.03!Tgif2;;chr4:63071779..63071791,-!p3@Akna!0.15!1.03!Akna;;chr4:135840623..135840632,+!p5@Zfp46!0.15!0.83!Zfp46;;chr5:107003725..107003746,-!p5@Zfp644!0.15!0.83!Zfp644;;chr13:83663546..83663560,+!p4@Mef2c!0.15!0.83!Mef2c;;chr13:44936126..44936164,+!p6@Jarid2!0.15!0.62!Jarid2;;chr15:50721942..50721987,-!p13@Trps1!0.15!0.62!Trps1;;chr18:53623836..53623839,+!p1@Prdm6!0.15!0.62!Prdm6;;chr6:6832076..6832092,-!p1@Dlx5!0.15!0.62!Dlx5;;chr6:29476684..29476685,+!p6@Irf5!0.15!0.41!Irf5;;chr5:108155037..108155060,-!p2@Gfi1!0.15!0.41!Gfi1;;chr5:67490284..67490302,-!p1@Phox2b!0.15!0.41!Phox2b;;chr5:67490474..67490494,-!p2@Phox2b!0.15!0.41!Phox2b;;chr6:28347999..28348023,-!p3@Zfp800!0.15!0.41!Zfp800;;chr6:16848443..16848459,-!p3@Tfec!0.15!0.41!Tfec;;chr5:115421065..115421088,-!p1@Hnf1a!0.15!0.41!Hnf1a;;chr7:122989676..122989687,-!p8@Sox6!0.15!0.41!Sox6;;chr6:15135215..15135244,+!p11@Foxp2!0.15!0.41!Foxp2;;chr13:56804798..56804806,+!p7@Smad5!0.15!0.41!Smad5;;chr14:63890545..63890560,-!p5@Gata4!0.15!0.41!Gata4;;chr13:55937467..55937516,-!p3@Pitx1!0.15!0.41!Pitx1;;chr14:63864337..63864381,-!p6@Gata4!0.15!0.41!Gata4;;chr13:48757894..48757908,+!p5@Barx1!0.15!0.41!Barx1;;chr13:83643159..83643226,+!p3@Mef2c!0.15!0.41!Mef2c;;chr15:103085858..103085863,-!p11@Nfe2!0.15!0.41!Nfe2;;chr12:77278238..77278252,-!p1@Esr2!0.15!0.41!Esr2;;chr13:78339241..78339273,-!p9@Nr2f1!0.15!0.41!Nr2f1;;chr13:83712735..83712761,+!p9@Mef2c!0.15!0.41!Mef2c;;chr14:32978944..32978953,+!p8@Gm6768,p8@Ncoa4!0.15!0.41!Ncoa4;;chr15:103085821..103085828,-!p6@Nfe2!0.15!0.41!Nfe2;;chr14:55330957..55330971,-!p2@Cebpe!0.15!0.41!Cebpe;;chr14:55331167..55331204,-!p3@Cebpe!0.15!0.41!Cebpe;;chr15:103083245..103083260,-!p7@Nfe2!0.15!0.41!Nfe2;;chr12:28027256..28027282,-!p2@Sox11!0.15!0.41!Sox11;;chr8:81551868..81551877,+!p13@Zfp827!0.15!0.41!Zfp827;;chr9:63869510..63869530,-!p10@Smad6!0.15!0.41!Smad6;;chr9:74714303..74714318,+!p2@Onecut1!0.15!0.41!Onecut1;;chr7:77511928..77511937,-!p12@Nr2f2!0.15!0.41!Nr2f2;;chr11:96184567..96184569,+!p8@Hoxb3!0.15!0.41!Hoxb3;;chr10:75384163..75384185,-!p3@Smarcb1!0.15!0.41!Smarcb1;;chr11:96143843..96143868,+!p3@Hoxb8!0.15!0.41!Hoxb8;;chr11:96143728..96143745,+!p4@Hoxb8!0.15!0.41!Hoxb8;;chr11:23977965..23977974,+!p11@Bcl11a!0.15!0.41!Bcl11a;;chr11:102180656..102180663,-!p24@Ubtf!0.15!0.41!Ubtf;;chr11:96160119..96160135,+!p7@Hoxb6!0.15!0.41!Hoxb6;;chr11:96160360..96160397,+!p3@Hoxb6!0.15!0.41!Hoxb6;;chr11:96160403..96160416,+!p4@Hoxb6!0.15!0.41!Hoxb6;;chr11:23978291..23978323,+!p7@Bcl11a!0.15!0.41!Bcl11a;;chr11:96180069..96180089,+!p3@Hoxb4!0.15!0.41!Hoxb4;;chr11:69468531..69468557,+!p1@Sox15!0.15!0.41!Sox15;;chr11:96143962..96144035,+!p2@Hoxb8!0.15!0.41!Hoxb8;;chr11:95170996..95171026,-!p3@Myst2!0.15!0.41!Myst2;;chr11:120491830..120491851,-!p10@Mafg!0.15!0.41!Mafg;;chr11:52095821..52095836,-!p3@Tcf7!0.15!0.41!Tcf7;;chr11:11590205..11590216,+!p9@Ikzf1!0.15!0.41!Ikzf1;;chr10:30375647..30375658,-!p7@Ncoa7!0.15!0.41!Ncoa7;;chr10:119913766..119913779,-!p10@Hmga2!0.15!0.41!Hmga2;;chr11:100721640..100721658,+!p2@Stat5a!0.15!0.41!Stat5a;;chr10:119913954..119913972,-!p8@Hmga2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| |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0004872,UBERON:0010316,FF:0000294 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|id=FF:461-43C1 | |||
|is_a=EFO:0002091;;FF:0011360 | |||
|is_obsolete= | |||
|library_id=CNhs11035 | |||
|library_id_phase_based=2:CNhs11035 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;461 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;461 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E16.CNhs11035.461-43C1.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E16.CNhs11035.461-43C1.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E16.CNhs11035.461-43C1.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E16.CNhs11035.461-43C1.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/spleen%252c%2520embryo%2520E16.CNhs11035.461-43C1.mm9.nobarcode.rdna.fa.gz | |||
|name=spleen, embryo E16 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11035,LSID732,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|repeat_enrich_byfamily=-0.0770522958052115,0,0.00415059153831483,0,0.0814866010703366,0,-0.104489472029866,0,0,0,0,0.265583169211483,0,0,0,0,0,0,0.0694997800189989,0,0.0407433005351683,0,0,0,0,0.0814866010703366,0,0,0,0,0,0,0.216333869267416,0,0,0,0,0,0.0492770736925489,0.0198342723536606,-0.0111505022410543,0.0616182490728342,0.153556643396508,0,0,0,0,0,0,0,0,0,0,0.150072612586664,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,0.0874444790104409,0.301688404489783,-0.158091042771083,0.0133180839142448,0,0.0034780003183852,0,0,0.0814866010703366,0,0.00625445618007105,-0.0917099688385443,-0.334521749838996,0.0712410177467562,0,0,0,0,0.0407433005351683,0,-0.145605663129316,-0.0899661735817814,-0.22905970169623,0,0,0,0,0 | |||
|rna_box=43 | |||
|rna_catalog_number= | |||
|rna_concentration= | |||
|rna_extraction_protocol= | |||
|rna_lot_number= | |||
|rna_od260/230= | |||
|rna_od260/280= | |||
|rna_position=C1 | |||
|rna_rin= | |||
|rna_sample_type= | |||
|rna_tube_id=43C1 | |||
|rna_weight_ug= | |||
|sample_age= | |||
|sample_category=developmental | |||
|sample_cell_catalog= | |||
|sample_cell_line= | |||
|sample_cell_lot= | |||
|sample_cell_type=CELL MIXTURE - tissue sample | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage=16 days embryo | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition= | |||
|sample_id=461 | |||
|sample_note= | |||
|sample_sex=mixture | |||
|sample_species=Mouse (Mus musculus) | |||
|sample_strain=C57BL/6J | |||
|sample_tissue=spleen | |||
|top_motifs=ZNF423:1.61977263131;ZNF148:1.45334584835;GATA6:1.2647947378;E2F1..5:1.17953388112;SPIB:1.13247446431;GFI1:1.12838099316;RXR{A,B,G}:1.05742719432;SPZ1:0.987963245039;RXRA_VDR{dimer}:0.965135666276;IKZF2:0.938215598012;XCPE1{core}:0.905340536425;IKZF1:0.895328907702;ZNF238:0.881660493574;GLI1..3:0.851992725174;RBPJ:0.808458045694;ETS1,2:0.789987941238;SPI1:0.779612993316;NR3C1:0.719422643239;TLX1..3_NFIC{dimer}:0.71752839282;TAL1_TCF{3,4,12}:0.705303763059;EP300:0.703217312081;EN1,2:0.683225032509;ELF1,2,4:0.671912188051;GATA4:0.662354587053;HMGA1,2:0.652069558161;SOX{8,9,10}:0.628962261307;MYBL2:0.599126965403;FOXP1:0.585795616763;NKX2-2,8:0.568828223488;ZIC1..3:0.561605272064;RREB1:0.532960430148;TFAP4:0.531384040533;TOPORS:0.522128749019;GTF2I:0.491069459671;MAZ:0.489048597378;MZF1:0.425291034188;PRDM1:0.38759580788;TEAD1:0.376452032753;ZNF384:0.373542711055;NFY{A,B,C}:0.363440557848;FOXD3:0.362749819698;RUNX1..3:0.362187949081;PATZ1:0.358866476269;HAND1,2:0.357599587777;GZF1:0.355784748328;HIF1A:0.355302501881;PAX6:0.350440336493;SP1:0.343836237562;CDX1,2,4:0.334343146857;FOXM1:0.330361149739;TFDP1:0.307169450531;NKX3-1:0.301752158883;SOX17:0.24268074671;ZNF143:0.23637687688;TBP:0.21809304603;NANOG{mouse}:0.216371916607;POU5F1:0.207009181304;FOX{I1,J2}:0.200602336572;SOX5:0.192203707798;PAX1,9:0.190457937371;SRF:0.18661983055;TFAP2{A,C}:0.181567459373;CEBPA,B_DDIT3:0.172443821724;STAT5{A,B}:0.150431826535;ALX4:0.147708283741;ARID5B:0.136503142092;TFAP2B:0.128845659488;ALX1:0.127758040704;NFE2L2:0.122425573559;EBF1:0.121036714128;BREu{core}:0.117952250408;DMAP1_NCOR{1,2}_SMARC:0.110741068535;MYB:0.105363830571;NFATC1..3:0.0986937481688;MTF1:0.0711270971051;SOX2:0.0695036337797;GTF2A1,2:0.0684628550049;TFCP2:0.0578770412859;FOXL1:0.056147214103;DBP:0.0458917186496;KLF4:0.0273629729031;PBX1:0.0225624742044;PAX5:0.0219754196897;HES1:0.00713409816753;NFKB1_REL_RELA:0.00535327866687;T:0.00364297024422;ZBTB16:-0.0174459479397;POU2F1..3:-0.0242715034248;ESR1:-0.029877916966;PITX1..3:-0.0370771004939;IRF7:-0.0379868625312;GCM1,2:-0.0388737675019;IRF1,2:-0.0502069765544;MTE{core}:-0.0518200946489;EGR1..3:-0.0581943607016;OCT4_SOX2{dimer}:-0.0591839292963;ELK1,4_GABP{A,B1}:-0.0732831215157;TBX4,5:-0.074724850364;PAX4:-0.077062754309;NRF1:-0.0798808972675;ADNP_IRX_SIX_ZHX:-0.118273113937;HSF1,2:-0.122579766653;YY1:-0.130978649919;NKX2-3_NKX2-5:-0.143823888093;FOX{F1,F2,J1}:-0.146066660659;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.162471681426;MYFfamily:-0.168462119377;NFIX:-0.18063670721;GFI1B:-0.194292946879;CUX2:-0.198440180485;MED-1{core}:-0.212336425693;HMX1:-0.217483325919;HNF1A:-0.219760894937;FOXA2:-0.221521262493;HOX{A5,B5}:-0.240581339196;NKX6-1,2:-0.241082210652;STAT1,3:-0.253532455591;AHR_ARNT_ARNT2:-0.25929029409;HIC1:-0.264544819196;NKX2-1,4:-0.266548186768;VSX1,2:-0.27473663165;PDX1:-0.27711147795;PAX2:-0.277544837385;HLF:-0.281347728895;PPARG:-0.284514747138;ZFP161:-0.304234606326;PRRX1,2:-0.323128710391;EVI1:-0.324370352973;MYOD1:-0.324583834641;TLX2:-0.329982053013;NFE2:-0.333379262018;NANOG:-0.334847764255;NKX3-2:-0.343514633125;SMAD1..7,9:-0.349071155376;bHLH_family:-0.350625281996;NR6A1:-0.375606336587;BACH2:-0.3775876369;HNF4A_NR2F1,2:-0.399292584327;CDC5L:-0.400994753989;UFEwm:-0.411913299064;POU6F1:-0.414342687507;MEF2{A,B,C,D}:-0.42561763572;SNAI1..3:-0.430972138401;STAT2,4,6:-0.434312912115;HOXA9_MEIS1:-0.451600295534;REST:-0.458458536655;FOX{D1,D2}:-0.460918878865;FOS_FOS{B,L1}_JUN{B,D}:-0.462544019504;NR1H4:-0.469101438904;CRX:-0.472004602437;RFX1:-0.488996537732;ATF6:-0.493952887782;LEF1_TCF7_TCF7L1,2:-0.501206890893;NHLH1,2:-0.50318952327;FOXO1,3,4:-0.505696408737;HBP1_HMGB_SSRP1_UBTF:-0.507355469056;FOXN1:-0.509794276761;LMO2:-0.512913982354;ATF2:-0.522713453714;POU1F1:-0.541292743338;ONECUT1,2:-0.541813929298;ZBTB6:-0.551531129806;PAX8:-0.606087497992;TP53:-0.613642897907;TGIF1:-0.617972246852;AIRE:-0.617999051124;FOXP3:-0.669712448293;FOXQ1:-0.673193212147;NR5A1,2:-0.679651174818;TEF:-0.710319467308;ATF5_CREB3:-0.71330352336;ZEB1:-0.716933713623;CREB1:-0.72326793094;BPTF:-0.728803187078;HOX{A4,D4}:-0.729055985608;RORA:-0.758168924798;ATF4:-0.77258830737;MAFB:-0.773816855703;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.783542456015;LHX3,4:-0.78708148648;FOSL2:-0.793740621767;RFX2..5_RFXANK_RFXAP:-0.88622642509;SREBF1,2:-0.888664798766;JUN:-0.894904840904;AR:-0.945893205885;ESRRA:-0.996745909274;NFE2L1:-1.04799316047;NFIL3:-1.0800655231;POU3F1..4:-1.10551025904 | |top_motifs=ZNF423:1.61977263131;ZNF148:1.45334584835;GATA6:1.2647947378;E2F1..5:1.17953388112;SPIB:1.13247446431;GFI1:1.12838099316;RXR{A,B,G}:1.05742719432;SPZ1:0.987963245039;RXRA_VDR{dimer}:0.965135666276;IKZF2:0.938215598012;XCPE1{core}:0.905340536425;IKZF1:0.895328907702;ZNF238:0.881660493574;GLI1..3:0.851992725174;RBPJ:0.808458045694;ETS1,2:0.789987941238;SPI1:0.779612993316;NR3C1:0.719422643239;TLX1..3_NFIC{dimer}:0.71752839282;TAL1_TCF{3,4,12}:0.705303763059;EP300:0.703217312081;EN1,2:0.683225032509;ELF1,2,4:0.671912188051;GATA4:0.662354587053;HMGA1,2:0.652069558161;SOX{8,9,10}:0.628962261307;MYBL2:0.599126965403;FOXP1:0.585795616763;NKX2-2,8:0.568828223488;ZIC1..3:0.561605272064;RREB1:0.532960430148;TFAP4:0.531384040533;TOPORS:0.522128749019;GTF2I:0.491069459671;MAZ:0.489048597378;MZF1:0.425291034188;PRDM1:0.38759580788;TEAD1:0.376452032753;ZNF384:0.373542711055;NFY{A,B,C}:0.363440557848;FOXD3:0.362749819698;RUNX1..3:0.362187949081;PATZ1:0.358866476269;HAND1,2:0.357599587777;GZF1:0.355784748328;HIF1A:0.355302501881;PAX6:0.350440336493;SP1:0.343836237562;CDX1,2,4:0.334343146857;FOXM1:0.330361149739;TFDP1:0.307169450531;NKX3-1:0.301752158883;SOX17:0.24268074671;ZNF143:0.23637687688;TBP:0.21809304603;NANOG{mouse}:0.216371916607;POU5F1:0.207009181304;FOX{I1,J2}:0.200602336572;SOX5:0.192203707798;PAX1,9:0.190457937371;SRF:0.18661983055;TFAP2{A,C}:0.181567459373;CEBPA,B_DDIT3:0.172443821724;STAT5{A,B}:0.150431826535;ALX4:0.147708283741;ARID5B:0.136503142092;TFAP2B:0.128845659488;ALX1:0.127758040704;NFE2L2:0.122425573559;EBF1:0.121036714128;BREu{core}:0.117952250408;DMAP1_NCOR{1,2}_SMARC:0.110741068535;MYB:0.105363830571;NFATC1..3:0.0986937481688;MTF1:0.0711270971051;SOX2:0.0695036337797;GTF2A1,2:0.0684628550049;TFCP2:0.0578770412859;FOXL1:0.056147214103;DBP:0.0458917186496;KLF4:0.0273629729031;PBX1:0.0225624742044;PAX5:0.0219754196897;HES1:0.00713409816753;NFKB1_REL_RELA:0.00535327866687;T:0.00364297024422;ZBTB16:-0.0174459479397;POU2F1..3:-0.0242715034248;ESR1:-0.029877916966;PITX1..3:-0.0370771004939;IRF7:-0.0379868625312;GCM1,2:-0.0388737675019;IRF1,2:-0.0502069765544;MTE{core}:-0.0518200946489;EGR1..3:-0.0581943607016;OCT4_SOX2{dimer}:-0.0591839292963;ELK1,4_GABP{A,B1}:-0.0732831215157;TBX4,5:-0.074724850364;PAX4:-0.077062754309;NRF1:-0.0798808972675;ADNP_IRX_SIX_ZHX:-0.118273113937;HSF1,2:-0.122579766653;YY1:-0.130978649919;NKX2-3_NKX2-5:-0.143823888093;FOX{F1,F2,J1}:-0.146066660659;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.162471681426;MYFfamily:-0.168462119377;NFIX:-0.18063670721;GFI1B:-0.194292946879;CUX2:-0.198440180485;MED-1{core}:-0.212336425693;HMX1:-0.217483325919;HNF1A:-0.219760894937;FOXA2:-0.221521262493;HOX{A5,B5}:-0.240581339196;NKX6-1,2:-0.241082210652;STAT1,3:-0.253532455591;AHR_ARNT_ARNT2:-0.25929029409;HIC1:-0.264544819196;NKX2-1,4:-0.266548186768;VSX1,2:-0.27473663165;PDX1:-0.27711147795;PAX2:-0.277544837385;HLF:-0.281347728895;PPARG:-0.284514747138;ZFP161:-0.304234606326;PRRX1,2:-0.323128710391;EVI1:-0.324370352973;MYOD1:-0.324583834641;TLX2:-0.329982053013;NFE2:-0.333379262018;NANOG:-0.334847764255;NKX3-2:-0.343514633125;SMAD1..7,9:-0.349071155376;bHLH_family:-0.350625281996;NR6A1:-0.375606336587;BACH2:-0.3775876369;HNF4A_NR2F1,2:-0.399292584327;CDC5L:-0.400994753989;UFEwm:-0.411913299064;POU6F1:-0.414342687507;MEF2{A,B,C,D}:-0.42561763572;SNAI1..3:-0.430972138401;STAT2,4,6:-0.434312912115;HOXA9_MEIS1:-0.451600295534;REST:-0.458458536655;FOX{D1,D2}:-0.460918878865;FOS_FOS{B,L1}_JUN{B,D}:-0.462544019504;NR1H4:-0.469101438904;CRX:-0.472004602437;RFX1:-0.488996537732;ATF6:-0.493952887782;LEF1_TCF7_TCF7L1,2:-0.501206890893;NHLH1,2:-0.50318952327;FOXO1,3,4:-0.505696408737;HBP1_HMGB_SSRP1_UBTF:-0.507355469056;FOXN1:-0.509794276761;LMO2:-0.512913982354;ATF2:-0.522713453714;POU1F1:-0.541292743338;ONECUT1,2:-0.541813929298;ZBTB6:-0.551531129806;PAX8:-0.606087497992;TP53:-0.613642897907;TGIF1:-0.617972246852;AIRE:-0.617999051124;FOXP3:-0.669712448293;FOXQ1:-0.673193212147;NR5A1,2:-0.679651174818;TEF:-0.710319467308;ATF5_CREB3:-0.71330352336;ZEB1:-0.716933713623;CREB1:-0.72326793094;BPTF:-0.728803187078;HOX{A4,D4}:-0.729055985608;RORA:-0.758168924798;ATF4:-0.77258830737;MAFB:-0.773816855703;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.783542456015;LHX3,4:-0.78708148648;FOSL2:-0.793740621767;RFX2..5_RFXANK_RFXAP:-0.88622642509;SREBF1,2:-0.888664798766;JUN:-0.894904840904;AR:-0.945893205885;ESRRA:-0.996745909274;NFE2L1:-1.04799316047;NFIL3:-1.0800655231;POU3F1..4:-1.10551025904 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:461-43C1;search_select_hide=table117:461-43C1 | |||
}} | }} |
Latest revision as of 19:17, 4 June 2020
Name: | spleen, embryo E16 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11035 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11035
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.00363 |
1001 | -0.0631 |
1002 | 0.239 |
1003 | 0.0389 |
1004 | 0 |
1005 | 0.109 |
1006 | -0.107 |
1007 | 0.0301 |
1008 | 0 |
1009 | 0.152 |
101 | 0.049 |
1010 | 0.209 |
1011 | -0.00851 |
1012 | 0 |
1013 | -0.0113 |
1014 | 0.209 |
1015 | 0.135 |
1016 | 0.187 |
1017 | 0.0815 |
1018 | 0.0815 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | -0.142 |
1023 | 0 |
1024 | -0.00131 |
1025 | 0.247 |
1026 | 0 |
1027 | 0 |
1028 | 0 |
1029 | -0.0945 |
103 | 0.259 |
1030 | 0 |
1031 | 0.329 |
1032 | -0.0782 |
1033 | 0.015 |
1034 | 0.0301 |
1035 | 0 |
1036 | 0.123 |
1037 | 0 |
1038 | 0.0487 |
1039 | -0.125 |
104 | 0 |
1040 | 0.202 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11035
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11035
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.191 |
10 | 10 | 0.966 |
100 | 100 | 0.645 |
101 | 101 | 0.622 |
102 | 102 | 0.765 |
103 | 103 | 0.881 |
104 | 104 | 0.886 |
105 | 105 | 0.54 |
106 | 106 | 0.48 |
107 | 107 | 0.281 |
108 | 108 | 0.958 |
109 | 109 | 0.0826 |
11 | 11 | 0.751 |
110 | 110 | 0.69 |
111 | 111 | 0.206 |
112 | 112 | 0.461 |
113 | 113 | 0.971 |
114 | 114 | 0.078 |
115 | 115 | 0.322 |
116 | 116 | 0.242 |
117 | 117 | 0.854 |
118 | 118 | 0.967 |
119 | 119 | 0.382 |
12 | 12 | 0.223 |
120 | 120 | 0.432 |
121 | 121 | 0.918 |
122 | 122 | 0.864 |
123 | 123 | 0.0173 |
124 | 124 | 0.5 |
125 | 125 | 0.348 |
126 | 126 | 0.582 |
127 | 127 | 0.613 |
128 | 128 | 0.717 |
129 | 129 | 0.209 |
13 | 13 | 0.027 |
130 | 130 | 0.00615 |
131 | 131 | 0.909 |
132 | 132 | 0.399 |
133 | 133 | 0.103 |
134 | 134 | 0.187 |
135 | 135 | 0.319 |
136 | 136 | 0.0614 |
137 | 137 | 0.07 |
138 | 138 | 0.00642 |
139 | 139 | 0.0737 |
14 | 14 | 0.863 |
140 | 140 | 0.576 |
141 | 141 | 0.987 |
142 | 142 | 0.814 |
143 | 143 | 0.476 |
144 | 144 | 0.526 |
145 | 145 | 0.0526 |
146 | 146 | 0.822 |
147 | 147 | 0.289 |
148 | 148 | 0.122 |
149 | 149 | 0.434 |
15 | 15 | 0.731 |
150 | 150 | 0.0513 |
151 | 151 | 0.608 |
152 | 152 | 0.117 |
153 | 153 | 0.525 |
154 | 154 | 0.393 |
155 | 155 | 0.437 |
156 | 156 | 2.75692e-5 |
157 | 157 | 0.818 |
158 | 158 | 0.99 |
159 | 159 | 0.308 |
160 | 160 | 0.0431 |
161 | 161 | 0.0324 |
162 | 162 | 0.622 |
163 | 163 | 0.76 |
164 | 164 | 0.581 |
165 | 165 | 0.228 |
166 | 166 | 0.344 |
167 | 167 | 0.413 |
168 | 168 | 0.855 |
169 | 169 | 0.139 |
17 | 17 | 0.391 |
18 | 18 | 0.28 |
19 | 19 | 0.112 |
2 | 2 | 0.79 |
20 | 20 | 0.994 |
21 | 21 | 0.0841 |
22 | 22 | 0.242 |
23 | 23 | 0.259 |
24 | 24 | 0.00212 |
25 | 25 | 0.11 |
26 | 26 | 0.0188 |
27 | 27 | 0.962 |
28 | 28 | 0.231 |
29 | 29 | 0.928 |
3 | 3 | 0.916 |
30 | 30 | 0.638 |
31 | 31 | 0.545 |
32 | 32 | 0.307 |
33 | 33 | 0.177 |
34 | 34 | 0.381 |
35 | 35 | 0.0293 |
36 | 36 | 0.711 |
37 | 37 | 0.455 |
38 | 38 | 0.765 |
39 | 39 | 0.638 |
4 | 4 | 0.558 |
40 | 40 | 0.695 |
41 | 41 | 0.387 |
42 | 42 | 0.275 |
43 | 43 | 0.935 |
44 | 44 | 0.0657 |
45 | 45 | 0.722 |
46 | 46 | 0.692 |
47 | 47 | 0.406 |
48 | 48 | 0.608 |
49 | 49 | 0.295 |
5 | 5 | 0.507 |
50 | 50 | 0.0571 |
51 | 51 | 0.55 |
52 | 52 | 0.494 |
53 | 53 | 0.601 |
54 | 54 | 0.377 |
55 | 55 | 0.581 |
56 | 56 | 0.716 |
57 | 57 | 0.657 |
58 | 58 | 0.581 |
59 | 59 | 0.177 |
6 | 6 | 0.623 |
60 | 60 | 0.5 |
61 | 61 | 0.146 |
62 | 62 | 0.192 |
63 | 63 | 0.777 |
64 | 64 | 0.793 |
65 | 65 | 0.956 |
66 | 66 | 0.991 |
67 | 67 | 0.874 |
68 | 68 | 0.0547 |
69 | 69 | 0.944 |
7 | 7 | 0.543 |
70 | 70 | 0.00333 |
71 | 71 | 0.421 |
72 | 72 | 0.139 |
73 | 73 | 0.124 |
74 | 74 | 0.571 |
75 | 75 | 0.852 |
76 | 76 | 0.72 |
77 | 77 | 0.825 |
78 | 78 | 0.301 |
79 | 79 | 0.617 |
8 | 8 | 0.795 |
80 | 80 | 0.542 |
81 | 81 | 0.654 |
82 | 82 | 0.559 |
83 | 83 | 0.436 |
84 | 84 | 0.00312 |
85 | 85 | 0.233 |
86 | 86 | 0.921 |
87 | 87 | 0.617 |
88 | 88 | 0.767 |
89 | 89 | 0.499 |
9 | 9 | 0.244 |
90 | 90 | 0.257 |
91 | 91 | 0.761 |
92 | 92 | 0.441 |
93 | 93 | 0.91 |
94 | 94 | 0.717 |
95 | 95 | 0.12 |
96 | 96 | 0.35 |
97 | 97 | 0.909 |
98 | 98 | 0.477 |
99 | 99 | 0.186 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11035
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002106 (spleen)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0004177 (hemopoietic organ)
0005057 (immune organ)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002390 (hematopoietic system)
0002417 (abdominal segment of trunk)
0002193 (hemolymphoid system)
0000916 (abdomen)
0002405 (immune system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000299 (mouse embryonic day 16 sample)
0011360 (mouse spleen- embryo E16 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)