FFCP PHASE2:Hg19::chr12:6485300..6485325,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:6337 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:10599 |TSSclas...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=6337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=10599 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
Latest revision as of 20:55, 19 September 2015
| Short description: | p5@SCNN1A |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_SCNN1A_5end |
| Coexpression cluster: | C2229_Amniotic_Placental_lung_thyroid_kidney_Small_testicular |
| Association with transcript: | -106bp_to_ENST00000536411_5end |
| EntrezGene: | SCNN1A |
| HGNC: | 10599 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@SCNN1A |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 3.80e-19 | 253 |
| kidney tubule cell | 2.17e-15 | 10 |
| nephron tubule epithelial cell | 2.17e-15 | 10 |
| epithelial cell of nephron | 2.03e-12 | 15 |
| endo-epithelial cell | 2.86e-12 | 42 |
| respiratory epithelial cell | 9.34e-11 | 13 |
| kidney cell | 1.00e-10 | 17 |
| kidney epithelial cell | 1.00e-10 | 17 |
| endodermal cell | 6.34e-10 | 58 |
| kidney cortical cell | 8.72e-10 | 12 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| urinary system structure | 9.39e-20 | 47 |
| renal system | 3.28e-19 | 48 |
| male reproductive organ | 2.79e-16 | 11 |
| kidney | 6.70e-16 | 26 |
| kidney mesenchyme | 6.70e-16 | 26 |
| upper urinary tract | 6.70e-16 | 26 |
| kidney rudiment | 6.70e-16 | 26 |
| kidney field | 6.70e-16 | 26 |
| nephron tubule epithelium | 2.17e-15 | 10 |
| cavitated compound organ | 1.51e-14 | 31 |
Showing 1 to 10 of 58 entries
