FFCP PHASE2:Hg19::chr11:105480740..105480750,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:2893 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:4574 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2893 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=4574 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q86XE8 | ||
|association_with_transcript=-5bp_to_ENST00000393125_5end | |association_with_transcript=-5bp_to_ENST00000393125_5end | ||
|cluster_id=chr11:105480740..105480750,+ | |cluster_id=chr11:105480740..105480750,+ | ||
Latest revision as of 21:12, 24 September 2015
| Short description: | p9@GRIA4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_9_at_GRIA4_5end |
| Coexpression cluster: | C787_cerebellum_pons_locus_brain_medulla_paracentral_temporal |
| Association with transcript: | -5bp_to_ENST00000393125_5end |
| EntrezGene: | GRIA4 |
| HGNC: | 4574 |
| UniProt: | Q86XE8 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p9@GRIA4 |
|---|
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3.5
4.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 2.80e-45 | 56 |
| neural rod | 2.80e-45 | 56 |
| future spinal cord | 2.80e-45 | 56 |
| neural keel | 2.80e-45 | 56 |
| central nervous system | 2.86e-45 | 81 |
| regional part of nervous system | 8.33e-43 | 53 |
| regional part of brain | 8.33e-43 | 53 |
| nervous system | 1.77e-40 | 89 |
| brain | 1.99e-40 | 68 |
| future brain | 1.99e-40 | 68 |
Showing 1 to 10 of 60 entries
| Ontology term | p-value | n |
|---|---|---|
| chondrosarcoma | 2.60e-09 | 1 |
| extraosseous chondrosarcoma | 2.60e-09 | 1 |
| myxoid chondrosarcoma | 2.60e-09 | 1 |
| extraskeletal myxoid chondrosarcoma | 2.60e-09 | 1 |
Showing 1 to 4 of 4 entries
