UBERON:0002091: Difference between revisions
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|is_obsolete= | |is_obsolete= | ||
|located_in= | |located_in= | ||
|name= | |name=appendicular skeleton | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0011249 | |part_of=UBERON:0011249 | ||
Latest revision as of 17:25, 12 September 2014
| Name: | appendicular skeleton | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Subdivision of skeleton which which consists of all the skeletal elements in in the pectoral and pelvic appendage complexes[cjm]." [UBERON:cjm, UBERONREF:0000003, Wikipedia:Appendicular_skeleton] | ||
| Xrefs: |
| ||
| Synonyms: |
"appendicular skeleton" EXACT [] "paired fin skeleton" NARROW SENSU [] "skeleton appendiculare" RELATED LATIN [Wikipedia:Appendicular_skeleton] | ||
| Comments: | Note that ontologies differ in whether they treat the term appendicular skeleton as being the entire set of bones in the limbs, or whether the fore and hind limbs/fins are treated as seperate appendicular skeletons. Here we follow FMA, and treat the appendicular skeleton as the sum total of skeletal elements in the organism (this is evidenced by the fact that in FMA, skeleton of left/right upper/lower limb is part_of a appendicular skeleton, and subtypes of 'subdivision of appendicular skeleton'). We have separate classes such as 'skeleton of limb', and 'skeleton of hindlimb' for the 4 parts of the appendicular skeleton. In future the ZFA/TAO classes may be moved. | ||
| Alt_id: | UBERON:FMA_71222-MA_0000290-MIAA_0000278-ZFA_0000027 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010912(subdivision of skeleton) |
|---|---|
| part_of: | UBERON:0011249(appendicular skeletal system) |
Children
| part of: | UBERON:0002495 (long bone),UBERON:0010712 (limb skeleton subdivision),UBERON:0010740 (bone of appendage girdle complex),UBERON:0010742 (bone of pelvic complex),UBERON:0010881 (limb cartilage element),UBERON:0010882 (limb bone pre-cartilage condensation),UBERON:0011582 (paired limb/fin skeleton),UBERON:0012476 (skeleton of pelvic complex) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002091 (appendicular skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.4e-49 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_f73cfbfa1b07087029ff46352c9c1358 | p26@Myo18a |
| 3.4e-49 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_f73cfbfa1b07087029ff46352c9c1358 | p26@Myo18a |
| 4.96e-49 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_057d6e873bf0f424175d14980d98876e | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_057d6e873bf0f424175d14980d98876e | p@chr8:75097542..75097549, + |
| 4.96e-49 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_057d6e873bf0f424175d14980d98876e | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_057d6e873bf0f424175d14980d98876e | p@chr2:32482372..32482381, + |
| 4.96e-49 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_057d6e873bf0f424175d14980d98876e | p@chr9:21934585..21934591, - |
| 4.96e-49 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_057d6e873bf0f424175d14980d98876e | p@chr8:75097542..75097549, + |
| 3.15e-44 | FFCP PHASE2:Mm9::chr6:51525810..51525817,+#_d6f15d81fbbd2718729961da22504a9d | p@chr6:51525810..51525817, + |
| 3.15e-44 | FFCP PHASE1:Mm9::chr6:51525810..51525817,+#_d6f15d81fbbd2718729961da22504a9d | p@chr6:51525810..51525817, + |
| 9.78e-40 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_0ca45fb336d18077e3a1ec148f47d577 | p@chr19:4876870..4876880, - |
| 9.78e-40 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_0ca45fb336d18077e3a1ec148f47d577 | p@chr19:4876870..4876880, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_ae059f7786c8378b717a3109bdd3ab12 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_ae059f7786c8378b717a3109bdd3ab12 | p@chr1:174140324..174140335, - |
| 1.15e-39 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr11:67063327..67063335, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr16:24096441..24096449, + |
| 1.15e-39 | FFCP PHASE1:Mm9::chr6:4490674..4490679,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr6:4490674..4490679,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr6:4490674..4490679, + |
| 1.15e-39 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_ae059f7786c8378b717a3109bdd3ab12 | p@chr16:24096441..24096449, + |
| 1.55e-39 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_4fe09402e7c4752dab6e6fd0ff3c7770 | p@chr1:174143249..174143260, - |
| 1.55e-39 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_4fe09402e7c4752dab6e6fd0ff3c7770 | p@chr1:174143249..174143260, - |
| 3.03e-39 | FFCP PHASE1:Mm9::chr6:51525869..51525891,+#_7629cf08ab541e3f9e10f4d0b157262d | p@chr6:51525869..51525891, + |
| 3.03e-39 | FFCP PHASE2:Mm9::chr6:51525869..51525891,+#_7629cf08ab541e3f9e10f4d0b157262d | p@chr6:51525869..51525891, + |
| 9.31e-39 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_659ef86004fd892a929c06d23ab08b53 | p3@Asb16 |
| 9.31e-39 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_659ef86004fd892a929c06d23ab08b53 | p3@Asb16 |
| 2.41e-35 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_cf26d96b7e6c6111b14c111a52f55f0a | p@chr7:133604286..133604297, - |
| 2.41e-35 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_cf26d96b7e6c6111b14c111a52f55f0a | p@chr7:133604286..133604297, - |
| 2.95e-35 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_d1135ed66d6887cd2be3d041b84e8169 | p5@Pla2g5 |
| 2.95e-35 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_d1135ed66d6887cd2be3d041b84e8169 | p5@Pla2g5 |
| 9.53e-34 | FFCP PHASE2:Mm9::chr8:74049600..74049612,-#_6cd9cc18d3666d06c0d30e476ea3fcb9 | p2@uc009mdq.1 |
| 9.53e-34 | FFCP PHASE1:Mm9::chr8:74049600..74049612,-#_6cd9cc18d3666d06c0d30e476ea3fcb9 | p2@uc009mdq.1 |
| 1.23e-33 | FFCP PHASE1:Mm9::chr2:164773241..164773248,+#_86fffeb612273beb8734d88f7ba9a137 | p3@Mmp9 |
| 1.23e-33 | FFCP PHASE2:Mm9::chr2:164773241..164773248,+#_86fffeb612273beb8734d88f7ba9a137 | p3@Mmp9 |
| 1.58e-33 | FFCP PHASE1:Mm9::chr7:3567707..3567718,-#_54c990d7becef63491bcce7edeb1e1fc | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr7:3567707..3567718,-#_54c990d7becef63491bcce7edeb1e1fc | p2@Oscar |
| 1.58e-33 | FFCP PHASE2:Mm9::chr1:166815111..166815121,-#_54c990d7becef63491bcce7edeb1e1fc | p@chr1:166815111..166815121, - |
| 1.58e-33 | FFCP PHASE1:Mm9::chr1:166815111..166815121,-#_54c990d7becef63491bcce7edeb1e1fc | p@chr1:166815111..166815121, - |
| 2.04e-33 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_bebc21d5ba152c249146b1b6dc9fe6bf | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_bebc21d5ba152c249146b1b6dc9fe6bf | p@chr11:75409652..75409664, + |
| 2.04e-33 | FFCP PHASE1:Mm9::chr9:70799951..70799962,-#_bebc21d5ba152c249146b1b6dc9fe6bf | p4@Lipc |
| 2.04e-33 | FFCP PHASE2:Mm9::chr9:70799951..70799962,-#_bebc21d5ba152c249146b1b6dc9fe6bf | p4@Lipc |
| 3.38e-33 | FFCP PHASE1:Mm9::chr15:102196702..102196713,-#_b7cc4b51f3f3b9251ce3c2416d7d1477 | p6@Sp7 |
| 3.38e-33 | FFCP PHASE2:Mm9::chr15:102196702..102196713,-#_b7cc4b51f3f3b9251ce3c2416d7d1477 | p6@Sp7 |
| 7.17e-33 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_f2308f28212c8ec23b39b9019c965e18 | p@chr8:126415826..126415839, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr18:76271498..76271508,+#_f2308f28212c8ec23b39b9019c965e18 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE2:Mm9::chr18:76271498..76271508,+#_f2308f28212c8ec23b39b9019c965e18 | p@chr18:76271498..76271508, + |
| 7.17e-33 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_f2308f28212c8ec23b39b9019c965e18 | p@chr8:126415826..126415839, + |
| 2.67e-30 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_39a26da5625fec8cf90ec8cb7997af04 | p@chr2:32482387..32482399, + |
| 2.67e-30 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_39a26da5625fec8cf90ec8cb7997af04 | p@chr2:32482387..32482399, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_eda6d043f3ce88e1a7541cd462edd257 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_eda6d043f3ce88e1a7541cd462edd257 | p@chr12:70396969..70396979, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr15:58649683..58649688,-#_eda6d043f3ce88e1a7541cd462edd257 | p@chr15:58649683..58649688, - |
| 1.1e-29 | FFCP PHASE1:Mm9::chr15:58649683..58649688,-#_eda6d043f3ce88e1a7541cd462edd257 | p@chr15:58649683..58649688, - |
| 1.46e-29 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_53f3d788df95943d76c5e6c52937a2ac | p@chr7:133590998..133591009, - |
| 1.46e-29 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_53f3d788df95943d76c5e6c52937a2ac | p@chr7:133590998..133591009, - |
| 1.73e-29 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_bfccd1413aec515f183203b8c7b25d18 | p2@Myoz3 |
| 1.73e-29 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_bfccd1413aec515f183203b8c7b25d18 | p2@Myoz3 |
| 2.42e-29 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_a4ed214ea959149798e121629882a5f0 | p2@Myh4 |
| 2.42e-29 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_a4ed214ea959149798e121629882a5f0 | p2@Myh4 |
| 7.46e-29 | FFCP PHASE2:Mm9::chr1:57155729..57155740,-#_cbc4f45b969673af746b5d00bc9ae83b | p@chr1:57155729..57155740, - |
| 7.46e-29 | FFCP PHASE1:Mm9::chr1:57155729..57155740,-#_cbc4f45b969673af746b5d00bc9ae83b | p@chr1:57155729..57155740, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_a1185a82824efb222c3721c7d94150dc | p@chr11:67056544..67056589, - |
| 9.26e-29 | FFCP PHASE2:Mm9::chr4:43597258..43597265,-#_a1185a82824efb222c3721c7d94150dc | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr4:43597258..43597265,-#_a1185a82824efb222c3721c7d94150dc | p1@Msmp |
| 9.26e-29 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_a1185a82824efb222c3721c7d94150dc | p@chr11:67056544..67056589, - |
| 1.15e-28 | FFCP PHASE2:Mm9::chrY:2858251..2858257,+#_06c623ca0adb59a922e2f0cf0914c0e5 | p@chrY:2858251..2858257, + |
| 1.15e-28 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_06c623ca0adb59a922e2f0cf0914c0e5 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_06c623ca0adb59a922e2f0cf0914c0e5 | p@chr6:90552017..90552024, + |
| 1.15e-28 | FFCP PHASE1:Mm9::chrY:2858251..2858257,+#_06c623ca0adb59a922e2f0cf0914c0e5 | p@chrY:2858251..2858257, + |
| 1.43e-28 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_a8b20210e7659527d11f2a17f470946d | p@chr6:34436258..34436292, + |
| 1.43e-28 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_a8b20210e7659527d11f2a17f470946d | p@chr6:34436258..34436292, + |
| 2.2e-28 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_bf756eb690964931f03443700bac092f | p@chr11:67069796..67069817, - |
| 2.2e-28 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_bf756eb690964931f03443700bac092f | p@chr11:67069796..67069817, - |
| 2.72e-28 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_10f6f8597d81994ef24c0b40c8a44c45 | p@chr8:107702369..107702386, + |
| 2.72e-28 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_10f6f8597d81994ef24c0b40c8a44c45 | p@chr8:107702369..107702386, + |
| 3.45e-28 | FFCP PHASE1:Mm9::chr18:78254135..78254146,-#_03ad116cf48353acde1b6685f97902f9 | p1@Siglec15 |
| 3.45e-28 | FFCP PHASE2:Mm9::chr18:78254135..78254146,-#_03ad116cf48353acde1b6685f97902f9 | p1@Siglec15 |
| 6.5e-28 | FFCP PHASE2:Mm9::chr7:133591490..133591500,-#_f894085b132c68e962b8e7fab821dade | p6@Atp2a1 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr7:133591490..133591500,-#_f894085b132c68e962b8e7fab821dade | p6@Atp2a1 |
| 8.9e-28 | FFCP PHASE2:Mm9::chr7:133591156..133591165,-#_58179346c1496340c6c595b3b145d014 | p7@Atp2a1 |
| 8.9e-28 | FFCP PHASE1:Mm9::chr7:133591156..133591165,-#_58179346c1496340c6c595b3b145d014 | p7@Atp2a1 |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133600635..133600663,+#_68a8637199c2930dd0c20bcd586dc7d0 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133600635..133600663,+#_68a8637199c2930dd0c20bcd586dc7d0 | p@chr7:133600635..133600663, + |
| 1.42e-27 | FFCP PHASE2:Mm9::chr7:133592162..133592188,-#_68a8637199c2930dd0c20bcd586dc7d0 | p@chr7:133592162..133592188, - |
| 1.42e-27 | FFCP PHASE1:Mm9::chr7:133592162..133592188,-#_68a8637199c2930dd0c20bcd586dc7d0 | p@chr7:133592162..133592188, - |
| 6.75e-27 | FFCP PHASE1:Mm9::chr11:94837662..94837673,-#_0dbcfc56036d52356f9833d0e7c3ea67 | p4@Sgca |
| 6.75e-27 | FFCP PHASE2:Mm9::chr11:94837662..94837673,-#_0dbcfc56036d52356f9833d0e7c3ea67 | p4@Sgca |
| 1.66e-26 | FFCP PHASE1:Mm9::chr5:104754379..104754387,+#_30295d72a0115907f5cb907c89f3246f | p1@Mepe |
| 1.66e-26 | FFCP PHASE2:Mm9::chr5:104754379..104754387,+#_30295d72a0115907f5cb907c89f3246f | p1@Mepe |
| 3.47e-26 | FFCP PHASE1:Mm9::chr12:81581216..81581231,+#_8c674277ffc3b6f7c42b5e8a2d990911 | p@chr12:81581216..81581231, + |
| 3.47e-26 | FFCP PHASE2:Mm9::chr16:32400888..32400899,+#_8c674277ffc3b6f7c42b5e8a2d990911 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE1:Mm9::chr16:32400888..32400899,+#_8c674277ffc3b6f7c42b5e8a2d990911 | p2@Tm4sf19 |
| 3.47e-26 | FFCP PHASE2:Mm9::chr12:81581216..81581231,+#_8c674277ffc3b6f7c42b5e8a2d990911 | p@chr12:81581216..81581231, + |
| 1.12e-25 | FFCP PHASE2:Mm9::chr17:34176173..34176200,+#_e378baa4e3fcca90270796a496b61ca0 | p5@Col11a2 |
| 1.12e-25 | FFCP PHASE1:Mm9::chr15:97806574..97806585,-#_e378baa4e3fcca90270796a496b61ca0 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE2:Mm9::chr15:97806574..97806585,-#_e378baa4e3fcca90270796a496b61ca0 | p@chr15:97806574..97806585, - |
| 1.12e-25 | FFCP PHASE1:Mm9::chr17:34176173..34176200,+#_e378baa4e3fcca90270796a496b61ca0 | p5@Col11a2 |
| 1.36e-25 | FFCP PHASE1:Mm9::chr18:78254174..78254185,-#_af420af95f0366303a3d8cb36dd19a1e | p2@Siglec15 |
| 1.36e-25 | FFCP PHASE2:Mm9::chr18:78254174..78254185,-#_af420af95f0366303a3d8cb36dd19a1e | p2@Siglec15 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal subdivision consisting of the paired fin or limb skeletal appendages.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Skeletal system that consists of the paired fins (pectoral or pelvic fins).[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The pectoral and pelvic girdles, which articulate with the axial skeleton, together with their associated limbs, the forelimbs and hind limbs, form the appendicular skeleton.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
